Wall clock time and date at job start Wed Apr 1 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99815 * 2 1 4 4 C 1.53179 * 109.54529 * 300.17859 * 3 2 1 5 5 C 1.53280 * 109.06328 * 176.85332 * 4 3 2 6 6 O 1.42901 * 109.46155 * 302.44168 * 5 4 3 7 7 C 1.42903 * 114.09356 * 61.15994 * 6 5 4 8 8 C 1.53091 * 109.41633 * 298.84001 * 7 6 5 9 9 S 1.65592 * 120.00011 * 180.02562 * 2 1 3 10 10 O 1.42096 * 106.40489 * 23.53869 * 9 2 1 11 11 O 1.42102 * 106.40313 * 156.46149 * 9 2 1 12 12 N 1.65602 * 107.21580 * 269.99705 * 9 2 1 13 13 C 1.47083 * 120.88254 * 269.72099 * 12 9 2 14 14 C 1.53698 * 108.27286 * 128.75691 * 13 12 9 15 15 N 1.46899 * 109.25588 * 54.08296 * 14 13 12 16 16 C 1.46902 * 110.99527 * 172.60397 * 15 14 13 17 17 C 1.50698 * 109.47627 * 294.30171 * 16 15 14 18 18 H 1.08006 * 119.99599 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00400 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99791 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00416 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47155 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47068 * 119.99390 * 21 19 17 24 24 H 1.48496 * 109.47569 * 239.99773 * 21 19 17 25 25 C 1.46897 * 111.26948 * 296.75230 * 15 14 13 26 26 C 1.47083 * 120.87894 * 90.00556 * 12 9 2 27 27 H 1.09004 * 109.46807 * 90.00010 * 1 2 3 28 28 H 1.08993 * 109.46997 * 209.99865 * 1 2 3 29 29 H 1.08997 * 109.47201 * 330.00344 * 1 2 3 30 30 H 1.09002 * 109.54141 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.52033 * 296.84435 * 4 3 2 32 32 H 1.09002 * 109.52377 * 57.02505 * 4 3 2 33 33 H 1.09007 * 109.45633 * 182.44534 * 5 4 3 34 34 H 1.09003 * 109.46692 * 62.44798 * 5 4 3 35 35 H 1.09000 * 109.47917 * 178.85973 * 7 6 5 36 36 H 1.09000 * 109.49157 * 58.82974 * 7 6 5 37 37 H 1.09004 * 109.52607 * 297.70481 * 8 7 6 38 38 H 1.08999 * 109.57497 * 177.54830 * 8 7 6 39 39 H 1.08997 * 109.62707 * 248.52319 * 13 12 9 40 40 H 1.08990 * 109.62746 * 9.10675 * 13 12 9 41 41 H 1.08996 * 109.64894 * 294.08071 * 14 13 12 42 42 H 1.09001 * 109.41803 * 173.95003 * 14 13 12 43 43 H 1.08996 * 109.47095 * 54.30635 * 16 15 14 44 44 H 1.09006 * 109.46909 * 174.30011 * 16 15 14 45 45 H 0.97006 * 120.00143 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.49337 * 303.14413 * 25 15 14 47 47 H 1.09005 * 109.51277 * 183.08044 * 25 15 14 48 48 H 1.08997 * 109.62801 * 350.89333 * 26 12 9 49 49 H 1.08997 * 109.63167 * 111.47228 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 1.8253 2.0754 -1.2479 5 6 2.5364 3.4324 -1.1974 6 8 2.1704 4.1173 0.0022 7 6 2.5360 3.4305 1.2008 8 6 1.8253 2.0753 1.2479 9 16 2.2930 -1.4341 -0.0006 10 8 1.4114 -2.4062 -0.5455 11 8 3.5760 -1.1565 -0.5449 12 7 2.5382 -1.8592 1.5810 13 6 3.7460 -1.4270 2.3004 14 6 3.3119 -0.7751 3.6229 15 7 2.4494 -1.7067 4.3619 16 6 2.1543 -1.1961 5.7074 17 6 3.4241 -1.1520 6.5177 18 1 4.3572 -1.4710 6.0771 19 6 3.3948 -0.7045 7.8215 20 7 2.2587 -0.3156 8.3578 21 14 4.9688 -0.6492 8.8257 22 1 6.1016 -1.1359 7.9978 23 1 5.2333 0.7476 9.2550 24 1 4.8231 -1.5157 10.0228 25 6 1.2117 -1.9878 3.6223 26 6 1.5567 -2.6843 2.3017 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.2695 1.0709 0.0005 31 1 2.1369 1.5314 -2.1396 32 1 0.7467 2.2304 -1.2731 33 1 2.2419 4.0289 -2.0609 34 1 3.6153 3.2779 -1.2132 35 1 2.2413 4.0256 2.0651 36 1 3.6149 3.2758 1.2168 37 1 0.7466 2.2304 1.2731 38 1 2.1359 1.5308 2.1396 39 1 4.3791 -2.2904 2.5047 40 1 4.2928 -0.7032 1.6961 41 1 2.7622 0.1430 3.4159 42 1 4.1941 -0.5446 4.2201 43 1 1.7366 -0.1922 5.6315 44 1 1.4344 -1.8531 6.1955 45 1 2.2379 -0.0011 9.2752 46 1 0.6913 -1.0527 3.4154 47 1 0.5703 -2.6366 4.2190 48 1 0.6555 -2.7921 1.6982 49 1 1.9835 -3.6662 2.5061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867825842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:43 Heat of formation + Delta-G solvation = -131.943418 kcal Electronic energy + Delta-G solvation = -31342.808235 eV Core-core repulsion = 27237.850816 eV Total energy + Delta-G solvation = -4104.957419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.54100 -39.77466 -38.53861 -37.38780 -37.05383 -36.01704 -34.26604 -32.76062 -32.15148 -32.00587 -29.63835 -27.78802 -26.77615 -25.01722 -24.69760 -24.56002 -23.58585 -21.64802 -20.96572 -19.93153 -19.12108 -18.56810 -18.46204 -17.75364 -17.00358 -16.86977 -16.71014 -16.02675 -15.94853 -15.77008 -15.64283 -15.39827 -15.37460 -15.21069 -15.01093 -14.64035 -14.38934 -14.10472 -13.78922 -13.66248 -13.53997 -13.33498 -13.25704 -13.25049 -12.93012 -12.76611 -12.65180 -12.59547 -12.38506 -12.30247 -12.26766 -12.24921 -12.04279 -11.99935 -11.62375 -11.28937 -11.20168 -10.62652 -10.60361 -10.19772 -10.03494 -8.96280 -8.18645 -6.27730 -0.58510 1.42262 1.44402 1.56456 1.69798 2.34000 2.42038 2.93977 3.11803 3.14664 3.27280 3.49908 3.62700 3.75709 3.86652 4.00050 4.05318 4.10716 4.22721 4.25179 4.31130 4.36989 4.42173 4.44367 4.51984 4.60761 4.65466 4.72931 4.77203 4.80681 4.81687 4.88865 4.91360 4.98798 5.05645 5.07485 5.10091 5.15009 5.23984 5.29525 5.33895 5.40036 5.64496 5.67783 6.07490 6.23767 6.34734 6.64792 6.89038 7.42370 8.92321 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.003749 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.693901 B = 7467.565651 C = 8826.482612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.000 6.000 3 C 0.145 3.855 4 C -0.157 4.157 5 C 0.059 3.941 6 O -0.397 6.397 7 C 0.062 3.938 8 C -0.163 4.163 9 S 2.796 3.204 10 O -0.995 6.995 11 O -0.997 6.997 12 N -1.005 6.005 13 C 0.134 3.866 14 C 0.056 3.944 15 N -0.541 5.541 16 C 0.211 3.789 17 C -0.519 4.519 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.282 1.282 25 C 0.043 3.957 26 C 0.135 3.865 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.077 0.923 43 H -0.036 1.036 44 H 0.004 0.996 45 H 0.263 0.737 46 H 0.029 0.971 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 4.918 -19.618 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.840 5.840 3 C 0.039 3.961 4 C -0.196 4.196 5 C -0.019 4.019 6 O -0.316 6.316 7 C -0.016 4.016 8 C -0.202 4.202 9 S 2.807 3.193 10 O -0.979 6.979 11 O -0.981 6.981 12 N -0.845 5.845 13 C 0.008 3.992 14 C -0.074 4.074 15 N -0.266 5.266 16 C 0.085 3.915 17 C -0.558 4.558 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.208 1.208 25 C -0.086 4.086 26 C 0.009 3.991 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.047 0.953 42 H 0.095 0.905 43 H -0.018 1.018 44 H 0.022 0.978 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.097 0.903 48 H 0.121 0.879 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.900 4.181 -20.208 20.723 hybrid contribution -0.028 0.651 1.426 1.568 sum -1.928 4.831 -18.782 19.489 Atomic orbital electron populations 1.21619 0.77224 1.03897 1.03040 1.57844 1.16183 1.20816 1.89110 1.21026 0.96129 0.82983 0.95996 1.22559 1.02906 0.96539 0.97635 1.22769 0.98816 0.92421 0.87853 1.87926 1.82176 1.47076 1.14406 1.22621 0.98785 0.92314 0.87862 1.22585 1.02782 0.96862 0.97990 1.01474 0.72417 0.72747 0.72695 1.93562 1.67359 1.59777 1.77232 1.93552 1.41661 1.85580 1.77351 1.58107 1.30013 1.65079 1.31350 1.21635 0.85489 1.00115 0.91936 1.22397 0.98034 0.92929 0.94029 1.61874 1.15951 1.45897 1.02864 1.19342 0.95743 0.91348 0.85100 1.21494 0.95107 1.41954 0.97204 0.91715 1.25826 0.99468 0.95025 0.99014 1.70082 1.27358 1.45096 1.14923 0.85410 0.79642 0.77617 0.78398 1.18647 1.20598 1.20838 1.22437 0.91951 0.99289 0.94957 1.21542 0.91608 0.94104 0.91827 0.91260 0.91016 0.89585 0.88914 0.89896 0.89799 0.86778 0.92278 0.88044 0.92169 0.90083 0.91090 0.90367 0.88341 0.95349 0.90474 1.01823 0.97771 0.92817 0.95236 0.90298 0.87877 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 9.29 127.77 1.19 2.61 16 2 N -1.00 -20.24 3.14 -515.87 -1.62 -21.86 16 3 C 0.14 2.74 2.59 45.11 0.12 2.86 16 4 C -0.16 -2.43 5.48 30.75 0.17 -2.26 16 5 C 0.06 0.87 6.85 72.08 0.49 1.36 16 6 O -0.40 -7.74 10.77 -148.98 -1.60 -9.34 16 7 C 0.06 1.13 6.84 72.01 0.49 1.62 16 8 C -0.16 -3.10 5.45 30.68 0.17 -2.94 16 9 S 2.80 71.90 6.06 -56.49 -0.34 71.56 16 10 O -1.00 -29.37 15.99 -128.00 -2.05 -31.41 16 11 O -1.00 -29.67 15.47 -128.00 -1.98 -31.65 16 12 N -1.01 -26.47 3.38 -511.33 -1.73 -28.20 16 13 C 0.13 3.72 6.56 86.50 0.57 4.28 16 14 C 0.06 1.90 5.47 86.54 0.47 2.38 16 15 N -0.54 -21.28 4.62 -898.88 -4.15 -25.43 16 16 C 0.21 10.53 4.72 85.56 0.40 10.93 16 17 C -0.52 -27.86 8.41 25.60 0.22 -27.65 16 18 H 0.06 3.40 7.13 -2.91 -0.02 3.38 16 19 C 0.00 0.26 5.46 84.65 0.46 0.72 16 20 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 21 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 C 0.04 1.37 5.62 86.38 0.49 1.86 16 26 C 0.13 3.51 6.53 86.35 0.56 4.08 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 1.16 7.79 -2.39 -0.02 1.15 16 29 H 0.09 1.20 6.37 -2.39 -0.02 1.19 16 30 H 0.09 1.89 6.92 -2.39 -0.02 1.87 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 1.21 7.58 -2.39 -0.02 1.19 16 33 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.50 6.55 -2.38 -0.02 1.48 16 38 H 0.07 1.55 6.58 -2.39 -0.02 1.54 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.10 2.39 7.21 -2.39 -0.02 2.37 16 41 H 0.03 0.94 6.58 -2.39 -0.02 0.93 16 42 H 0.08 2.90 6.67 -2.39 -0.02 2.89 16 43 H -0.04 -1.95 8.12 -2.39 -0.02 -1.97 16 44 H 0.00 0.23 7.97 -2.38 -0.02 0.21 16 45 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 46 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 2.49 7.99 -2.38 -0.02 2.47 16 48 H 0.10 2.26 7.22 -2.39 -0.02 2.24 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -68.13 385.14 -4.43 -72.57 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.93 Total: 13.14 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.80 Total: -0.14 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -7.21 Total: -129.52 kcal Atomic # 8 Polarization: -66.77 SS G_CDS: -5.63 Total: -72.41 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 71.90 SS G_CDS: -0.34 Total: 71.56 kcal Total: -68.13 -4.43 -72.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867825842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.376 kcal (2) G-P(sol) polarization free energy of solvation -68.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds