Wall clock time and date at job start Wed Apr 1 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00380 * 2 1 4 4 C 1.50702 * 109.47574 * 84.99694 * 3 2 1 5 5 H 1.08002 * 119.99441 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00075 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00481 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99886 * 179.73007 * 6 4 3 9 9 H 1.48494 * 109.47225 * 180.27306 * 8 6 4 10 10 H 1.48506 * 109.46866 * 300.27330 * 8 6 4 11 11 H 1.48498 * 109.47306 * 60.26614 * 8 6 4 12 12 S 1.65599 * 119.99777 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40214 * 23.54161 * 12 2 1 14 14 O 1.42100 * 106.40264 * 156.46018 * 12 2 1 15 15 N 1.65600 * 107.22019 * 269.99900 * 12 2 1 16 16 C 1.46507 * 119.99788 * 65.00323 * 15 12 2 17 17 C 1.52995 * 109.47227 * 165.00212 * 16 15 12 18 18 H 1.09008 * 110.32800 * 307.23734 * 17 16 15 19 19 C 1.54617 * 110.36871 * 184.99747 * 17 16 15 20 20 C 1.53950 * 103.85783 * 217.26983 * 19 17 16 21 21 C 1.53905 * 104.64354 * 0.17337 * 20 19 17 22 22 O 1.44478 * 110.37147 * 69.59796 * 17 16 15 23 23 C 1.52455 * 110.32777 * 241.47060 * 20 19 17 24 24 C 1.53160 * 109.32956 * 293.72930 * 23 20 19 25 25 N 1.46862 * 109.44588 * 301.84199 * 24 23 20 26 26 C 1.46853 * 111.29550 * 62.23815 * 25 24 23 27 27 C 1.52441 * 110.33027 * 118.88895 * 20 19 17 28 28 H 1.08998 * 109.47108 * 89.99517 * 1 2 3 29 29 H 1.09000 * 109.47673 * 210.00615 * 1 2 3 30 30 H 1.09003 * 109.46752 * 330.00421 * 1 2 3 31 31 H 1.09009 * 109.47230 * 325.00035 * 3 2 1 32 32 H 1.08998 * 109.47557 * 205.00526 * 3 2 1 33 33 H 0.97005 * 119.99656 * 359.72741 * 7 6 4 34 34 H 0.96990 * 120.00527 * 244.99964 * 15 12 2 35 35 H 1.09003 * 109.46411 * 284.99834 * 16 15 12 36 36 H 1.08994 * 109.47230 * 44.99094 * 16 15 12 37 37 H 1.08990 * 110.55207 * 335.86637 * 19 17 16 38 38 H 1.09003 * 110.54631 * 98.67805 * 19 17 16 39 39 H 1.08994 * 110.39644 * 142.35853 * 21 20 19 40 40 H 1.08994 * 110.39653 * 264.64915 * 21 20 19 41 41 H 1.08997 * 109.49261 * 53.68395 * 23 20 19 42 42 H 1.08992 * 109.49508 * 173.77226 * 23 20 19 43 43 H 1.08994 * 109.47866 * 181.84854 * 24 23 20 44 44 H 1.09004 * 109.47684 * 61.83039 * 24 23 20 45 45 H 1.00894 * 110.99790 * 186.40602 * 25 24 23 46 46 H 1.09005 * 109.47573 * 177.77235 * 26 25 24 47 47 H 1.09003 * 109.48359 * 57.76193 * 26 25 24 48 48 H 1.09003 * 109.49787 * 186.23403 * 27 20 19 49 49 H 1.09002 * 109.48931 * 306.28631 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9289 1.1935 2.2332 6 6 2.9999 2.9508 1.6662 7 7 3.5027 3.6473 0.6704 8 14 3.1717 3.5707 3.4200 9 1 3.9091 4.8597 3.4194 10 1 1.8230 3.7722 4.0081 11 1 3.9194 2.5730 4.2267 12 16 2.2930 -1.4342 0.0006 13 8 1.4112 -2.4068 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5381 -1.8580 1.5826 16 6 1.3945 -2.1769 2.4411 17 6 1.8874 -2.8833 3.7055 18 1 2.5136 -3.7362 3.4431 19 6 0.6887 -3.3411 4.5682 20 6 1.1665 -3.1132 6.0138 21 6 2.5886 -2.5431 5.8683 22 8 2.6163 -1.9610 4.5454 23 6 1.1998 -4.4338 6.7750 24 6 -0.2288 -4.9617 6.9370 25 7 -1.0411 -3.9644 7.6460 26 6 -1.1360 -2.7135 6.8826 27 6 0.2617 -2.1090 6.7186 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6502 2.0043 -0.5895 32 1 3.1858 1.1176 -0.4344 33 1 3.4139 3.3252 -0.2403 34 1 3.4386 -1.8953 1.9408 35 1 0.8794 -1.2566 2.7165 36 1 0.7078 -2.8307 1.9037 37 1 -0.1903 -2.7328 4.3554 38 1 0.4754 -4.3963 4.3976 39 1 2.7704 -1.7785 6.6235 40 1 3.3276 -3.3401 5.9501 41 1 1.7946 -5.1588 6.2195 42 1 1.6429 -4.2759 7.7581 43 1 -0.2108 -5.8891 7.5094 44 1 -0.6606 -5.1495 5.9540 45 1 -1.9576 -4.3292 7.8579 46 1 -1.7759 -2.0102 7.4155 47 1 -1.5608 -2.9187 5.9000 48 1 0.6739 -1.8740 7.6999 49 1 0.1969 -1.1979 6.1237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871809488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:48 Heat of formation + Delta-G solvation = -129.229371 kcal Electronic energy + Delta-G solvation = -30696.130905 eV Core-core repulsion = 26591.291176 eV Total energy + Delta-G solvation = -4104.839729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.75980 -37.71263 -36.70623 -35.66020 -35.28526 -34.87203 -33.03470 -32.61301 -31.23090 -30.37483 -27.47398 -26.72617 -25.33393 -24.81508 -23.44957 -22.43611 -22.13786 -21.52019 -19.05945 -18.67262 -17.30082 -17.17714 -17.05301 -16.66427 -16.47416 -15.82104 -15.52309 -15.27417 -15.12015 -14.48486 -14.34123 -13.89655 -13.83069 -13.70656 -13.39119 -13.33804 -13.13870 -12.63276 -12.58207 -12.44566 -12.26695 -12.25291 -11.93476 -11.73773 -11.57789 -11.55547 -11.49562 -11.32889 -11.22651 -11.07271 -10.73375 -10.57404 -10.54994 -10.53042 -10.46985 -10.09955 -9.73982 -9.39154 -9.14010 -8.78754 -8.39420 -7.93193 -6.39594 -4.13271 1.25067 3.40358 3.43504 3.46926 3.64287 3.76730 3.86759 4.12192 4.19259 4.34672 4.46478 4.52439 4.68608 4.80562 4.86588 4.97665 5.00798 5.05693 5.09121 5.20293 5.25436 5.31438 5.35109 5.41369 5.44528 5.49768 5.50605 5.54881 5.64742 5.68990 5.72302 5.85763 5.90802 5.95037 5.98008 6.03983 6.11926 6.23083 6.46141 6.66460 6.79722 7.00377 7.00988 7.19344 7.33761 7.54052 8.00245 8.43929 8.79045 9.58077 10.98135 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.003840 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.375675 B = 7290.587192 C = 8808.075468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.993 5.993 3 C 0.236 3.764 4 C -0.616 4.616 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 1.068 2.932 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.285 1.285 12 S 2.792 3.208 13 O -1.001 7.001 14 O -0.980 6.980 15 N -1.120 6.120 16 C 0.130 3.870 17 C 0.071 3.929 18 H 0.075 0.925 19 C -0.142 4.142 20 C -0.090 4.090 21 C 0.053 3.947 22 O -0.355 6.355 23 C -0.103 4.103 24 C 0.057 3.943 25 N -0.691 5.691 26 C 0.056 3.944 27 C -0.103 4.103 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.040 0.960 33 H 0.269 0.731 34 H 0.418 0.582 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.341 0.659 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -16.862 12.883 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.834 5.834 3 C 0.113 3.887 4 C -0.655 4.655 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.544 5.544 8 Si 0.896 3.104 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.212 1.212 12 S 2.799 3.201 13 O -0.985 6.985 14 O -0.964 6.964 15 N -0.880 5.880 16 C 0.003 3.997 17 C 0.011 3.989 18 H 0.093 0.907 19 C -0.181 4.181 20 C -0.091 4.091 21 C -0.024 4.024 22 O -0.274 6.274 23 C -0.141 4.141 24 C -0.072 4.072 25 N -0.322 5.322 26 C -0.073 4.073 27 C -0.141 4.141 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.159 0.841 46 H 0.093 0.907 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.923 -15.662 13.242 21.987 hybrid contribution -1.139 -1.440 -0.939 2.062 sum -9.062 -17.102 12.302 22.933 Atomic orbital electron populations 1.21242 0.80095 1.02086 1.00683 1.57436 1.14114 1.23078 1.88805 1.19267 0.91573 0.79657 0.98212 1.22360 1.40617 1.09991 0.92550 0.92329 1.25772 0.93110 0.93664 1.05738 1.70797 1.42892 1.40075 1.00624 0.83559 0.76414 0.76325 0.74107 1.20829 1.21528 1.21162 1.01534 0.72884 0.72708 0.72991 1.93537 1.67644 1.60028 1.77290 1.93585 1.40929 1.85164 1.76740 1.55823 1.14780 1.86011 1.31343 1.21253 0.88423 1.00160 0.89842 1.23206 0.92416 0.92173 0.91068 0.90736 1.23097 0.98988 1.02222 0.93746 1.21521 0.96282 0.96239 0.95056 1.23446 0.94685 0.98108 0.86156 1.89322 1.75285 1.44387 1.18394 1.21533 0.96397 0.95424 1.00711 1.21960 0.93988 0.94605 0.96650 1.60247 1.19398 1.05280 1.47311 1.21984 0.97446 0.91727 0.96112 1.21556 0.94085 0.97543 1.00875 0.93694 0.92921 0.90775 0.95533 0.94183 0.92045 0.74866 0.90753 0.89907 0.90045 0.90276 0.88912 0.92254 0.91342 0.90804 0.90860 0.94944 0.84105 0.90665 0.94871 0.90922 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.82 10.31 59.85 0.62 2.44 16 2 N -0.99 -20.85 3.23 -123.05 -0.40 -21.25 16 3 C 0.24 5.95 4.72 -5.20 -0.02 5.93 16 4 C -0.62 -16.70 9.38 -34.44 -0.32 -17.02 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 7 N -0.91 -27.26 13.65 55.43 0.76 -26.51 16 8 Si 1.07 25.08 29.90 -169.99 -5.08 20.00 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 S 2.79 56.16 6.10 -107.50 -0.66 55.51 16 13 O -1.00 -20.35 16.68 -57.17 -0.95 -21.30 16 14 O -0.98 -23.23 16.69 -57.17 -0.95 -24.18 16 15 N -1.12 -19.04 6.06 -10.61 -0.06 -19.11 16 16 C 0.13 1.84 5.85 -4.04 -0.02 1.82 16 17 C 0.07 0.85 3.36 -25.88 -0.09 0.77 16 18 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 19 C -0.14 -1.34 4.91 -25.39 -0.12 -1.47 16 20 C -0.09 -0.82 0.69 -154.11 -0.11 -0.92 16 21 C 0.05 0.57 6.73 37.63 0.25 0.82 16 22 O -0.36 -5.11 11.35 -35.23 -0.40 -5.51 16 23 C -0.10 -0.77 4.59 -26.93 -0.12 -0.90 16 24 C 0.06 0.40 6.36 -3.76 -0.02 0.37 16 25 N -0.69 -5.12 6.83 -113.66 -0.78 -5.89 16 26 C 0.06 0.45 6.36 -3.77 -0.02 0.43 16 27 C -0.10 -0.95 4.59 -26.93 -0.12 -1.07 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 30 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 31 H 0.03 0.68 7.98 -51.92 -0.41 0.27 16 32 H 0.04 1.10 6.78 -51.93 -0.35 0.75 16 33 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 34 H 0.42 6.90 8.65 -34.47 -0.30 6.60 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 37 H 0.08 0.77 6.57 -51.93 -0.34 0.43 16 38 H 0.08 0.63 6.82 -51.93 -0.35 0.28 16 39 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 40 H 0.06 0.56 7.85 -51.93 -0.41 0.15 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.03 0.23 6.94 -51.93 -0.36 -0.13 16 45 H 0.34 1.99 8.90 -39.29 -0.35 1.64 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.03 0.27 6.95 -51.93 -0.36 -0.09 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -34.42 392.34 -11.00 -45.42 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.18 Total: 5.19 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.21 Total: -8.28 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -0.48 Total: -72.76 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -2.31 Total: -50.99 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.66 Total: 55.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.42 -11.00 -45.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871809488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.809 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds