Wall clock time and date at job start Wed Apr 1 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00380 * 2 1 4 4 C 1.50702 * 109.47574 * 84.99694 * 3 2 1 5 5 H 1.08002 * 119.99441 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00075 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00481 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99886 * 179.73007 * 6 4 3 9 9 H 1.48494 * 109.47225 * 180.27306 * 8 6 4 10 10 H 1.48506 * 109.46866 * 300.27330 * 8 6 4 11 11 H 1.48498 * 109.47306 * 60.26614 * 8 6 4 12 12 S 1.65599 * 119.99777 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40214 * 23.54161 * 12 2 1 14 14 O 1.42100 * 106.40264 * 156.46018 * 12 2 1 15 15 N 1.65600 * 107.22019 * 269.99900 * 12 2 1 16 16 C 1.46507 * 119.99788 * 65.00323 * 15 12 2 17 17 C 1.52995 * 109.47227 * 165.00212 * 16 15 12 18 18 H 1.09008 * 110.32800 * 307.23734 * 17 16 15 19 19 C 1.54617 * 110.36871 * 184.99747 * 17 16 15 20 20 C 1.53950 * 103.85783 * 217.26983 * 19 17 16 21 21 C 1.53905 * 104.64354 * 0.17337 * 20 19 17 22 22 O 1.44478 * 110.37147 * 69.59796 * 17 16 15 23 23 C 1.52455 * 110.32777 * 241.47060 * 20 19 17 24 24 C 1.53160 * 109.32956 * 293.72930 * 23 20 19 25 25 N 1.46862 * 109.44588 * 301.84199 * 24 23 20 26 26 C 1.46853 * 111.29550 * 62.23815 * 25 24 23 27 27 C 1.52441 * 110.33027 * 118.88895 * 20 19 17 28 28 H 1.08998 * 109.47108 * 89.99517 * 1 2 3 29 29 H 1.09000 * 109.47673 * 210.00615 * 1 2 3 30 30 H 1.09003 * 109.46752 * 330.00421 * 1 2 3 31 31 H 1.09009 * 109.47230 * 325.00035 * 3 2 1 32 32 H 1.08998 * 109.47557 * 205.00526 * 3 2 1 33 33 H 0.97005 * 119.99656 * 359.72741 * 7 6 4 34 34 H 0.96990 * 120.00527 * 244.99964 * 15 12 2 35 35 H 1.09003 * 109.46411 * 284.99834 * 16 15 12 36 36 H 1.08994 * 109.47230 * 44.99094 * 16 15 12 37 37 H 1.08990 * 110.55207 * 335.86637 * 19 17 16 38 38 H 1.09003 * 110.54631 * 98.67805 * 19 17 16 39 39 H 1.08994 * 110.39644 * 142.35853 * 21 20 19 40 40 H 1.08994 * 110.39653 * 264.64915 * 21 20 19 41 41 H 1.08997 * 109.49261 * 53.68395 * 23 20 19 42 42 H 1.08992 * 109.49508 * 173.77226 * 23 20 19 43 43 H 1.08994 * 109.47866 * 181.84854 * 24 23 20 44 44 H 1.09004 * 109.47684 * 61.83039 * 24 23 20 45 45 H 1.00894 * 110.99790 * 186.40602 * 25 24 23 46 46 H 1.09005 * 109.47573 * 177.77235 * 26 25 24 47 47 H 1.09003 * 109.48359 * 57.76193 * 26 25 24 48 48 H 1.09003 * 109.49787 * 186.23403 * 27 20 19 49 49 H 1.09002 * 109.48931 * 306.28631 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9289 1.1935 2.2332 6 6 2.9999 2.9508 1.6662 7 7 3.5027 3.6473 0.6704 8 14 3.1717 3.5707 3.4200 9 1 3.9091 4.8597 3.4194 10 1 1.8230 3.7722 4.0081 11 1 3.9194 2.5730 4.2267 12 16 2.2930 -1.4342 0.0006 13 8 1.4112 -2.4068 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5381 -1.8580 1.5826 16 6 1.3945 -2.1769 2.4411 17 6 1.8874 -2.8833 3.7055 18 1 2.5136 -3.7362 3.4431 19 6 0.6887 -3.3411 4.5682 20 6 1.1665 -3.1132 6.0138 21 6 2.5886 -2.5431 5.8683 22 8 2.6163 -1.9610 4.5454 23 6 1.1998 -4.4338 6.7750 24 6 -0.2288 -4.9617 6.9370 25 7 -1.0411 -3.9644 7.6460 26 6 -1.1360 -2.7135 6.8826 27 6 0.2617 -2.1090 6.7186 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6502 2.0043 -0.5895 32 1 3.1858 1.1176 -0.4344 33 1 3.4139 3.3252 -0.2403 34 1 3.4386 -1.8953 1.9408 35 1 0.8794 -1.2566 2.7165 36 1 0.7078 -2.8307 1.9037 37 1 -0.1903 -2.7328 4.3554 38 1 0.4754 -4.3963 4.3976 39 1 2.7704 -1.7785 6.6235 40 1 3.3276 -3.3401 5.9501 41 1 1.7946 -5.1588 6.2195 42 1 1.6429 -4.2759 7.7581 43 1 -0.2108 -5.8891 7.5094 44 1 -0.6606 -5.1495 5.9540 45 1 -1.9576 -4.3292 7.8579 46 1 -1.7759 -2.0102 7.4155 47 1 -1.5608 -2.9187 5.9000 48 1 0.6739 -1.8740 7.6999 49 1 0.1969 -1.1979 6.1237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871809488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:47 Heat of formation + Delta-G solvation = -157.413445 kcal Electronic energy + Delta-G solvation = -30697.353058 eV Core-core repulsion = 26591.291176 eV Total energy + Delta-G solvation = -4106.061882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53739 -38.54010 -38.34851 -37.44484 -37.00002 -36.09979 -34.67031 -33.76770 -31.82919 -31.36274 -29.33995 -27.46994 -26.63786 -26.30797 -24.42380 -24.04896 -22.84152 -22.45875 -20.53420 -19.51670 -19.08140 -18.84115 -18.25938 -17.90104 -17.65465 -16.88513 -16.56559 -16.40305 -15.85300 -15.76140 -15.63150 -15.50143 -15.00209 -14.93894 -14.50024 -14.34585 -14.14493 -14.08747 -13.98821 -13.55045 -13.49978 -13.39653 -13.28631 -13.20587 -13.17062 -12.93622 -12.87449 -12.40440 -12.33889 -12.28896 -12.12275 -12.10292 -11.93922 -11.61016 -11.28809 -11.22242 -11.16735 -10.64223 -10.57772 -10.48187 -9.77348 -9.32875 -8.62932 -6.38092 -0.36246 1.53672 1.61603 1.80119 1.88735 2.52180 2.57188 2.89498 3.16907 3.28083 3.34916 3.46974 3.63747 3.76793 3.89405 3.92521 4.06580 4.10585 4.21500 4.28996 4.43834 4.44559 4.52560 4.58249 4.60918 4.65680 4.69389 4.71794 4.76567 4.79508 4.85401 4.92372 4.94262 4.96233 4.99082 5.03666 5.11462 5.22456 5.29303 5.30926 5.40160 5.64512 5.86353 5.91883 6.05529 6.11410 6.26199 6.53790 6.54022 7.41630 8.73908 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.003840 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.375675 B = 7290.587192 C = 8808.075468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.999 5.999 3 C 0.247 3.753 4 C -0.614 4.614 5 H 0.063 0.937 6 C -0.029 4.029 7 N -0.936 5.936 8 Si 1.112 2.888 9 H -0.286 1.286 10 H -0.266 1.266 11 H -0.275 1.275 12 S 2.806 3.194 13 O -1.001 7.001 14 O -1.020 7.020 15 N -1.115 6.115 16 C 0.122 3.878 17 C 0.070 3.930 18 H 0.086 0.914 19 C -0.135 4.135 20 C -0.084 4.084 21 C 0.047 3.953 22 O -0.391 6.391 23 C -0.100 4.100 24 C 0.057 3.943 25 N -0.698 5.698 26 C 0.060 3.940 27 C -0.102 4.102 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.257 0.743 34 H 0.420 0.580 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.351 0.649 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.068 0.932 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 -18.753 14.815 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.840 5.840 3 C 0.122 3.878 4 C -0.653 4.653 5 H 0.081 0.919 6 C -0.228 4.228 7 N -0.574 5.574 8 Si 0.934 3.066 9 H -0.212 1.212 10 H -0.191 1.191 11 H -0.200 1.200 12 S 2.814 3.186 13 O -0.984 6.984 14 O -1.005 7.005 15 N -0.876 5.876 16 C -0.004 4.004 17 C 0.011 3.989 18 H 0.104 0.896 19 C -0.173 4.173 20 C -0.085 4.085 21 C -0.029 4.029 22 O -0.311 6.311 23 C -0.137 4.137 24 C -0.072 4.072 25 N -0.330 5.330 26 C -0.070 4.070 27 C -0.140 4.140 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.054 0.946 45 H 0.170 0.830 46 H 0.096 0.904 47 H 0.052 0.948 48 H 0.086 0.914 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.493 -17.586 15.167 25.088 hybrid contribution -0.697 -0.920 -1.537 1.922 sum -10.191 -18.505 13.629 25.141 Atomic orbital electron populations 1.21515 0.77838 1.03467 1.02128 1.57372 1.15700 1.21657 1.89301 1.18859 0.90640 0.81221 0.97042 1.22630 1.39554 1.09675 0.93406 0.91872 1.27169 0.92659 0.94346 1.08597 1.70916 1.44935 1.41006 1.00522 0.82999 0.77598 0.75848 0.70190 1.21175 1.19099 1.20047 1.00959 0.71839 0.72346 0.73468 1.93530 1.67422 1.59602 1.77844 1.93528 1.43040 1.85674 1.78246 1.55601 1.15874 1.85514 1.30636 1.21543 0.87682 1.00495 0.90688 1.23281 0.93573 0.91759 0.90245 0.89603 1.23085 0.97726 1.03335 0.93187 1.21466 0.95007 0.96911 0.95088 1.23616 0.96237 0.98392 0.84684 1.89278 1.75888 1.45833 1.20090 1.21522 0.97158 0.94651 1.00402 1.21995 0.93332 0.94832 0.97050 1.60228 1.20231 1.05254 1.47288 1.21919 0.96508 0.92169 0.96367 1.21520 0.95093 0.97118 1.00305 0.92278 0.90029 0.90931 0.96489 0.97024 0.93394 0.74580 0.91674 0.87950 0.90069 0.88231 0.89267 0.90995 0.90254 0.91121 0.89629 0.94592 0.83000 0.90354 0.94756 0.91366 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.16 10.31 127.77 1.32 4.48 16 2 N -1.00 -41.70 3.23 -543.22 -1.75 -43.45 16 3 C 0.25 12.71 4.72 85.63 0.40 13.11 16 4 C -0.61 -33.39 9.38 25.60 0.24 -33.15 16 5 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 6 C -0.03 -1.64 5.46 84.65 0.46 -1.18 16 7 N -0.94 -57.30 13.65 21.45 0.29 -57.00 16 8 Si 1.11 50.10 29.90 68.60 2.05 52.15 16 9 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 S 2.81 111.68 6.10 -56.49 -0.34 111.34 16 13 O -1.00 -39.07 16.68 -128.00 -2.14 -41.21 16 14 O -1.02 -49.24 16.69 -128.00 -2.14 -51.38 16 15 N -1.11 -36.87 6.06 -187.49 -1.14 -38.01 16 16 C 0.12 3.23 5.85 86.38 0.51 3.73 16 17 C 0.07 1.56 3.36 31.14 0.10 1.67 16 18 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 19 C -0.14 -2.20 4.91 31.47 0.15 -2.04 16 20 C -0.08 -1.35 0.69 -51.92 -0.04 -1.38 16 21 C 0.05 0.95 6.73 72.29 0.49 1.43 16 22 O -0.39 -10.83 11.35 -148.98 -1.69 -12.52 16 23 C -0.10 -1.22 4.59 30.47 0.14 -1.08 16 24 C 0.06 0.62 6.36 86.36 0.55 1.17 16 25 N -0.70 -8.57 6.83 -513.50 -3.51 -12.08 16 26 C 0.06 0.83 6.36 86.37 0.55 1.38 16 27 C -0.10 -1.74 4.59 30.46 0.14 -1.60 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 29 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 30 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.02 0.90 7.98 -2.38 -0.02 0.88 16 32 H 0.01 0.67 6.78 -2.39 -0.02 0.66 16 33 H 0.26 15.89 7.22 -92.70 -0.67 15.22 16 34 H 0.42 13.70 8.65 -96.75 -0.84 12.86 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.10 2.30 7.75 -2.39 -0.02 2.28 16 37 H 0.08 1.34 6.57 -2.39 -0.02 1.33 16 38 H 0.10 1.23 6.82 -2.39 -0.02 1.21 16 39 H 0.09 1.80 7.85 -2.39 -0.02 1.78 16 40 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.04 0.37 6.94 -2.39 -0.02 0.36 16 45 H 0.35 3.19 8.90 -89.70 -0.80 2.39 16 46 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.03 0.47 6.95 -2.39 -0.02 0.45 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -73.78 392.34 -5.92 -79.69 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.58 Total: 25.94 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 5.02 Total: -13.47 kcal Atomic # 7 Polarization: -144.44 SS G_CDS: -6.10 Total: -150.54 kcal Atomic # 8 Polarization: -99.15 SS G_CDS: -5.96 Total: -105.11 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Atomic # 16 Polarization: 111.68 SS G_CDS: -0.34 Total: 111.34 kcal Total: -73.78 -5.92 -79.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871809488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.721 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds