Wall clock time and date at job start Wed Apr 1 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00274 * 2 1 4 4 C 1.53177 * 109.54440 * 300.44576 * 3 2 1 5 5 C 1.53095 * 109.16016 * 176.84747 * 4 3 2 6 6 O 1.42905 * 109.41426 * 302.38828 * 5 4 3 7 7 C 1.42903 * 114.09919 * 61.15968 * 6 5 4 8 8 C 1.53088 * 109.41534 * 298.84447 * 7 6 5 9 9 S 1.65599 * 119.99645 * 180.02562 * 2 1 3 10 10 O 1.42101 * 106.40464 * 23.54108 * 9 2 1 11 11 O 1.42105 * 106.40142 * 156.46194 * 9 2 1 12 12 N 1.65603 * 107.21701 * 270.00015 * 9 2 1 13 13 C 1.46499 * 119.99794 * 65.00482 * 12 9 2 14 14 C 1.53043 * 109.45788 * 265.02496 * 13 12 9 15 15 C 1.53191 * 109.31469 * 178.60393 * 14 13 12 16 16 N 1.46932 * 108.76550 * 54.65044 * 15 14 13 17 17 C 1.36934 * 120.62757 * 126.40363 * 16 15 14 18 18 H 1.07998 * 120.00311 * 331.83762 * 17 16 15 19 19 C 1.38811 * 119.99860 * 151.82970 * 17 16 15 20 20 N 1.31618 * 119.99977 * 343.07080 * 19 17 16 21 21 Si 1.86799 * 120.00130 * 163.07286 * 19 17 16 22 22 H 1.48503 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47443 * 120.00052 * 21 19 17 24 24 H 1.48499 * 109.47306 * 239.99946 * 21 19 17 25 25 C 1.46919 * 118.74009 * 306.38919 * 16 15 14 26 26 C 1.53041 * 109.45902 * 144.97475 * 13 12 9 27 27 H 1.09007 * 109.46816 * 89.99321 * 1 2 3 28 28 H 1.08995 * 109.47214 * 209.99561 * 1 2 3 29 29 H 1.09000 * 109.46934 * 330.00154 * 1 2 3 30 30 H 1.09003 * 109.61442 * 180.22080 * 3 2 1 31 31 H 1.08997 * 109.52271 * 296.74714 * 4 3 2 32 32 H 1.09000 * 109.52325 * 56.93931 * 4 3 2 33 33 H 1.09000 * 109.47464 * 182.40852 * 5 4 3 34 34 H 1.08995 * 109.48258 * 62.37085 * 5 4 3 35 35 H 1.08996 * 109.48044 * 178.85934 * 7 6 5 36 36 H 1.09000 * 109.48528 * 58.82794 * 7 6 5 37 37 H 1.09007 * 109.52338 * 297.69959 * 8 7 6 38 38 H 1.08998 * 109.52270 * 177.51239 * 8 7 6 39 39 H 0.96999 * 119.99618 * 245.00004 * 12 9 2 40 40 H 1.08993 * 109.46276 * 24.99774 * 13 12 9 41 41 H 1.09008 * 109.49510 * 298.56616 * 14 13 12 42 42 H 1.08997 * 109.49581 * 58.66192 * 14 13 12 43 43 H 1.09003 * 109.59648 * 294.86667 * 15 14 13 44 44 H 1.08995 * 109.70390 * 174.50683 * 15 14 13 45 45 H 0.96998 * 120.00200 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58731 * 293.81944 * 25 16 15 47 47 H 1.09000 * 109.70095 * 173.46175 * 25 16 15 48 48 H 1.08999 * 109.49463 * 301.32807 * 26 13 12 49 49 H 1.08997 * 109.50469 * 61.43177 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 1.8204 2.0782 -1.2445 5 6 2.5297 3.4341 -1.1960 6 8 2.1671 4.1171 0.0058 7 6 2.5376 3.4293 1.2024 8 6 1.8288 2.0733 1.2502 9 16 2.2930 -1.4342 -0.0006 10 8 1.4113 -2.4063 -0.5455 11 8 3.5760 -1.1566 -0.5449 12 7 2.5380 -1.8594 1.5810 13 6 1.3945 -2.1790 2.4392 14 6 0.9782 -0.9301 3.2198 15 6 -0.2392 -1.2587 4.0896 16 7 0.0817 -2.4183 4.9331 17 6 -0.0793 -2.3586 6.2916 18 1 0.0051 -1.4119 6.8044 19 6 -0.3510 -3.5150 7.0098 20 7 -0.7805 -4.5915 6.3859 21 14 -0.1072 -3.5435 8.8616 22 1 0.3788 -2.2163 9.3173 23 1 -1.3988 -3.8521 9.5263 24 1 0.8916 -4.5845 9.2134 25 6 0.5782 -3.6430 4.2912 26 6 1.7863 -3.2875 3.4188 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 3.2698 1.0721 -0.0040 31 1 2.1299 1.5371 -2.1386 32 1 0.7415 2.2320 -1.2658 33 1 2.2314 4.0312 -2.0576 34 1 3.6086 3.2808 -1.2155 35 1 2.2452 4.0231 2.0683 36 1 3.6167 3.2760 1.2143 37 1 0.7500 2.2270 1.2793 38 1 2.1441 1.5286 2.1401 39 1 3.4387 -1.8969 1.9391 40 1 0.5612 -2.5166 1.8230 41 1 1.8028 -0.6065 3.8550 42 1 0.7218 -0.1334 2.5216 43 1 -1.0910 -1.4953 3.4520 44 1 -0.4816 -0.4037 4.7207 45 1 -0.9700 -5.3997 6.8877 46 1 -0.2069 -4.0740 3.6699 47 1 0.8771 -4.3623 5.0536 48 1 2.1050 -4.1689 2.8623 49 1 2.6031 -2.9415 4.0522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116115586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:47 Heat of formation + Delta-G solvation = -104.333819 kcal Electronic energy + Delta-G solvation = -31135.258711 eV Core-core repulsion = 27031.498533 eV Total energy + Delta-G solvation = -4103.760177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.82657 -38.14157 -37.20739 -36.57282 -35.83776 -34.65370 -31.98438 -31.91556 -31.42321 -30.09701 -29.18282 -26.96023 -24.89752 -24.24091 -23.89530 -22.28594 -21.98320 -20.39538 -19.76069 -19.15163 -18.02172 -17.50970 -16.87858 -16.78975 -16.31101 -15.91170 -15.29651 -15.03000 -14.85754 -14.55128 -14.37664 -14.01027 -13.89717 -13.67211 -13.56487 -13.19875 -13.03953 -12.86784 -12.74780 -12.60214 -12.11852 -12.07717 -11.96856 -11.81167 -11.59580 -11.58319 -11.53452 -11.30902 -11.11682 -10.93070 -10.77957 -10.71213 -10.52095 -10.36941 -10.16558 -9.93187 -9.88131 -9.64985 -9.26527 -9.08255 -8.52415 -6.75328 -5.85115 -3.28103 0.57955 2.79162 3.33136 3.41560 3.43144 3.51955 3.59758 4.24948 4.38718 4.44181 4.45928 4.64073 4.67829 4.81274 4.91548 5.06536 5.10916 5.22158 5.27704 5.34089 5.36871 5.39016 5.40134 5.44880 5.51231 5.56922 5.61883 5.69030 5.72124 5.77736 5.83833 6.01093 6.09932 6.17713 6.29743 6.36941 6.43751 6.55336 6.64378 6.71514 6.85764 6.89034 7.11719 7.28441 7.58374 7.74189 8.38466 9.14532 9.77659 10.33769 11.23506 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.003230 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.959390 B = 8665.573014 C = 9755.329272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.002 6.002 3 C 0.150 3.850 4 C -0.163 4.163 5 C 0.063 3.937 6 O -0.383 6.383 7 C 0.063 3.937 8 C -0.170 4.170 9 S 2.783 3.217 10 O -0.975 6.975 11 O -0.988 6.988 12 N -1.121 6.121 13 C 0.156 3.844 14 C -0.150 4.150 15 C 0.147 3.853 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.172 3.828 26 C -0.142 4.142 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.413 0.587 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.022 0.978 47 H 0.092 0.908 48 H 0.056 0.944 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 13.599 -13.955 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.841 5.841 3 C 0.044 3.956 4 C -0.202 4.202 5 C -0.015 4.015 6 O -0.302 6.302 7 C -0.015 4.015 8 C -0.209 4.209 9 S 2.792 3.208 10 O -0.958 6.958 11 O -0.972 6.972 12 N -0.881 5.881 13 C 0.050 3.950 14 C -0.191 4.191 15 C 0.020 3.980 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.045 3.955 26 C -0.183 4.183 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.246 0.754 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.110 0.890 48 H 0.075 0.925 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.385 13.101 -14.738 20.727 hybrid contribution 0.449 -0.273 1.470 1.561 sum 6.834 12.828 -13.268 19.680 Atomic orbital electron populations 1.21503 0.78257 1.03593 1.02116 1.57893 1.15490 1.21202 1.89514 1.20873 0.96457 0.83282 0.95013 1.22553 1.02599 0.96502 0.98547 1.22574 0.98412 0.92607 0.87885 1.87944 1.81874 1.46561 1.13774 1.22590 0.98282 0.92701 0.87887 1.22677 1.02903 0.96620 0.98691 1.01928 0.72750 0.72847 0.73303 1.93622 1.67110 1.58034 1.77079 1.93582 1.40893 1.85289 1.77437 1.56079 1.15736 1.84912 1.31408 1.20884 0.86219 0.96247 0.91674 1.22643 1.01070 0.96362 0.99063 1.20868 0.92752 0.91682 0.92746 1.44079 1.74433 1.09967 1.02945 1.19202 1.42703 0.94520 0.81962 0.91616 1.25058 0.99079 0.97396 0.98018 1.70029 1.46811 1.02905 1.34782 0.86237 0.77470 0.77576 0.85541 1.20271 1.21711 1.21556 1.20793 0.90564 0.89580 0.94586 1.22501 1.01922 0.96441 0.97439 0.92474 0.90646 0.90620 0.88338 0.90385 0.90206 0.88581 0.92883 0.88380 0.92945 0.89981 0.89704 0.75401 0.90008 0.91698 0.92449 0.96360 0.92478 0.93584 0.96015 0.89029 0.92515 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 8.17 59.85 0.49 1.37 16 2 N -1.00 -10.68 2.78 -114.41 -0.32 -11.00 16 3 C 0.15 1.40 2.60 -67.75 -0.18 1.23 16 4 C -0.16 -1.33 5.46 -26.59 -0.15 -1.48 16 5 C 0.06 0.48 6.84 37.21 0.25 0.73 16 6 O -0.38 -3.62 10.77 -35.23 -0.38 -4.00 16 7 C 0.06 0.50 6.84 37.20 0.25 0.76 16 8 C -0.17 -1.43 5.07 -26.59 -0.13 -1.57 16 9 S 2.78 37.66 6.08 -107.50 -0.65 37.01 16 10 O -0.98 -16.39 16.55 -57.17 -0.95 -17.34 16 11 O -0.99 -15.05 16.70 -57.17 -0.96 -16.00 16 12 N -1.12 -14.57 5.53 -4.86 -0.03 -14.60 16 13 C 0.16 2.40 2.77 -67.89 -0.19 2.21 16 14 C -0.15 -2.24 5.68 -26.61 -0.15 -2.39 16 15 C 0.15 2.78 6.52 -3.71 -0.02 2.76 16 16 N -0.59 -13.89 2.99 -172.32 -0.52 -14.40 16 17 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 18 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.35 11.19 55.49 0.62 -24.73 16 21 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 26 C -0.14 -2.52 5.61 -26.61 -0.15 -2.67 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.81 7.35 -51.93 -0.38 0.43 16 29 H 0.08 0.61 6.38 -51.93 -0.33 0.28 16 30 H 0.10 0.97 6.92 -51.93 -0.36 0.61 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.64 7.57 -51.93 -0.39 0.25 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.70 6.56 -51.93 -0.34 0.36 16 38 H 0.08 0.73 7.56 -51.93 -0.39 0.34 16 39 H 0.41 4.72 8.84 -34.47 -0.30 4.42 16 40 H 0.08 1.33 7.06 -51.93 -0.37 0.97 16 41 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.06 0.70 5.60 -51.93 -0.29 0.41 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.34 6.07 -51.93 -0.31 2.02 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -32.29 382.47 -10.75 -43.03 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.09 Total: 2.27 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.22 Total: -2.01 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -0.24 Total: -64.73 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -2.28 Total: -37.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Atomic # 16 Polarization: 37.66 SS G_CDS: -0.65 Total: 37.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.29 -10.75 -43.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116115586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.300 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds