Wall clock time and date at job start Wed Apr 1 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00274 * 2 1 4 4 C 1.53177 * 109.54440 * 300.44576 * 3 2 1 5 5 C 1.53095 * 109.16016 * 176.84747 * 4 3 2 6 6 O 1.42905 * 109.41426 * 302.38828 * 5 4 3 7 7 C 1.42903 * 114.09919 * 61.15968 * 6 5 4 8 8 C 1.53088 * 109.41534 * 298.84447 * 7 6 5 9 9 S 1.65599 * 119.99645 * 180.02562 * 2 1 3 10 10 O 1.42101 * 106.40464 * 23.54108 * 9 2 1 11 11 O 1.42105 * 106.40142 * 156.46194 * 9 2 1 12 12 N 1.65603 * 107.21701 * 270.00015 * 9 2 1 13 13 C 1.46499 * 119.99794 * 65.00482 * 12 9 2 14 14 C 1.53043 * 109.45788 * 265.02496 * 13 12 9 15 15 C 1.53191 * 109.31469 * 178.60393 * 14 13 12 16 16 N 1.46932 * 108.76550 * 54.65044 * 15 14 13 17 17 C 1.36934 * 120.62757 * 126.40363 * 16 15 14 18 18 H 1.07998 * 120.00311 * 331.83762 * 17 16 15 19 19 C 1.38811 * 119.99860 * 151.82970 * 17 16 15 20 20 N 1.31618 * 119.99977 * 343.07080 * 19 17 16 21 21 Si 1.86799 * 120.00130 * 163.07286 * 19 17 16 22 22 H 1.48503 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47443 * 120.00052 * 21 19 17 24 24 H 1.48499 * 109.47306 * 239.99946 * 21 19 17 25 25 C 1.46919 * 118.74009 * 306.38919 * 16 15 14 26 26 C 1.53041 * 109.45902 * 144.97475 * 13 12 9 27 27 H 1.09007 * 109.46816 * 89.99321 * 1 2 3 28 28 H 1.08995 * 109.47214 * 209.99561 * 1 2 3 29 29 H 1.09000 * 109.46934 * 330.00154 * 1 2 3 30 30 H 1.09003 * 109.61442 * 180.22080 * 3 2 1 31 31 H 1.08997 * 109.52271 * 296.74714 * 4 3 2 32 32 H 1.09000 * 109.52325 * 56.93931 * 4 3 2 33 33 H 1.09000 * 109.47464 * 182.40852 * 5 4 3 34 34 H 1.08995 * 109.48258 * 62.37085 * 5 4 3 35 35 H 1.08996 * 109.48044 * 178.85934 * 7 6 5 36 36 H 1.09000 * 109.48528 * 58.82794 * 7 6 5 37 37 H 1.09007 * 109.52338 * 297.69959 * 8 7 6 38 38 H 1.08998 * 109.52270 * 177.51239 * 8 7 6 39 39 H 0.96999 * 119.99618 * 245.00004 * 12 9 2 40 40 H 1.08993 * 109.46276 * 24.99774 * 13 12 9 41 41 H 1.09008 * 109.49510 * 298.56616 * 14 13 12 42 42 H 1.08997 * 109.49581 * 58.66192 * 14 13 12 43 43 H 1.09003 * 109.59648 * 294.86667 * 15 14 13 44 44 H 1.08995 * 109.70390 * 174.50683 * 15 14 13 45 45 H 0.96998 * 120.00200 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58731 * 293.81944 * 25 16 15 47 47 H 1.09000 * 109.70095 * 173.46175 * 25 16 15 48 48 H 1.08999 * 109.49463 * 301.32807 * 26 13 12 49 49 H 1.08997 * 109.50469 * 61.43177 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 1.8204 2.0782 -1.2445 5 6 2.5297 3.4341 -1.1960 6 8 2.1671 4.1171 0.0058 7 6 2.5376 3.4293 1.2024 8 6 1.8288 2.0733 1.2502 9 16 2.2930 -1.4342 -0.0006 10 8 1.4113 -2.4063 -0.5455 11 8 3.5760 -1.1566 -0.5449 12 7 2.5380 -1.8594 1.5810 13 6 1.3945 -2.1790 2.4392 14 6 0.9782 -0.9301 3.2198 15 6 -0.2392 -1.2587 4.0896 16 7 0.0817 -2.4183 4.9331 17 6 -0.0793 -2.3586 6.2916 18 1 0.0051 -1.4119 6.8044 19 6 -0.3510 -3.5150 7.0098 20 7 -0.7805 -4.5915 6.3859 21 14 -0.1072 -3.5435 8.8616 22 1 0.3788 -2.2163 9.3173 23 1 -1.3988 -3.8521 9.5263 24 1 0.8916 -4.5845 9.2134 25 6 0.5782 -3.6430 4.2912 26 6 1.7863 -3.2875 3.4188 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 3.2698 1.0721 -0.0040 31 1 2.1299 1.5371 -2.1386 32 1 0.7415 2.2320 -1.2658 33 1 2.2314 4.0312 -2.0576 34 1 3.6086 3.2808 -1.2155 35 1 2.2452 4.0231 2.0683 36 1 3.6167 3.2760 1.2143 37 1 0.7500 2.2270 1.2793 38 1 2.1441 1.5286 2.1401 39 1 3.4387 -1.8969 1.9391 40 1 0.5612 -2.5166 1.8230 41 1 1.8028 -0.6065 3.8550 42 1 0.7218 -0.1334 2.5216 43 1 -1.0910 -1.4953 3.4520 44 1 -0.4816 -0.4037 4.7207 45 1 -0.9700 -5.3997 6.8877 46 1 -0.2069 -4.0740 3.6699 47 1 0.8771 -4.3623 5.0536 48 1 2.1050 -4.1689 2.8623 49 1 2.6031 -2.9415 4.0522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116115586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:46 Heat of formation + Delta-G solvation = -128.064218 kcal Electronic energy + Delta-G solvation = -31136.287738 eV Core-core repulsion = 27031.498533 eV Total energy + Delta-G solvation = -4104.789204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.49111 -39.59509 -38.40190 -37.35550 -37.02228 -36.21497 -33.68006 -32.69442 -32.03882 -31.63793 -30.78560 -27.73759 -26.71255 -24.95362 -24.53560 -23.80292 -23.57809 -21.21761 -21.04481 -20.29205 -19.08454 -18.87894 -18.29858 -17.66335 -17.12808 -16.93467 -16.70287 -16.23831 -15.71418 -15.55332 -15.37277 -15.28930 -15.26221 -14.77951 -14.74381 -14.51772 -14.37343 -14.30158 -13.69901 -13.43918 -13.32061 -13.22751 -13.19206 -13.08447 -12.92010 -12.70142 -12.60917 -12.47491 -12.31082 -12.21619 -12.17263 -11.99407 -11.91800 -11.87684 -11.61506 -11.27993 -11.15743 -10.60501 -10.53813 -10.33291 -10.04727 -8.67104 -7.85741 -5.30641 -0.49849 1.47547 1.50464 1.59871 1.78008 2.46326 2.53143 3.01317 3.25383 3.30651 3.57909 3.68539 3.80400 3.82972 3.89451 4.03957 4.07393 4.13096 4.25288 4.33761 4.41800 4.47468 4.53848 4.57886 4.66282 4.71029 4.73639 4.84239 4.85667 4.86324 4.90368 4.94769 5.01298 5.11924 5.14299 5.19803 5.20492 5.28435 5.40197 5.41826 5.51172 5.54907 5.67802 5.75577 6.09861 6.30292 6.41614 7.16990 7.88399 8.39457 9.20988 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.003230 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.959390 B = 8665.573014 C = 9755.329272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.995 5.995 3 C 0.145 3.855 4 C -0.160 4.160 5 C 0.061 3.939 6 O -0.399 6.399 7 C 0.061 3.939 8 C -0.166 4.166 9 S 2.799 3.201 10 O -1.009 7.009 11 O -1.003 7.003 12 N -1.113 6.113 13 C 0.165 3.835 14 C -0.134 4.134 15 C 0.141 3.859 16 N -0.609 5.609 17 C -0.258 4.258 18 H 0.070 0.930 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.177 3.823 26 C -0.132 4.132 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.422 0.578 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.017 0.983 44 H 0.061 0.939 45 H 0.249 0.751 46 H -0.003 1.003 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 15.906 -14.435 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.836 5.836 3 C 0.039 3.961 4 C -0.200 4.200 5 C -0.016 4.016 6 O -0.318 6.318 7 C -0.017 4.017 8 C -0.205 4.205 9 S 2.808 3.192 10 O -0.992 6.992 11 O -0.987 6.987 12 N -0.874 5.874 13 C 0.058 3.942 14 C -0.174 4.174 15 C 0.015 3.985 16 N -0.333 5.333 17 C -0.388 4.388 18 H 0.087 0.913 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.220 1.220 25 C 0.051 3.949 26 C -0.173 4.173 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.257 0.743 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.035 0.965 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.243 15.435 -15.233 22.863 hybrid contribution 0.167 -0.922 1.545 1.807 sum 7.409 14.513 -13.688 21.281 Atomic orbital electron populations 1.21670 0.77403 1.04046 1.03036 1.57667 1.15900 1.20701 1.89282 1.21056 0.96151 0.82657 0.96241 1.22542 1.02921 0.96613 0.97892 1.22684 0.98723 0.92340 0.87874 1.87927 1.82139 1.47241 1.14506 1.22681 0.98701 0.92420 0.87859 1.22648 1.03082 0.96704 0.98050 1.01268 0.72076 0.72906 0.72956 1.93580 1.67877 1.59944 1.77821 1.93560 1.41865 1.85595 1.77683 1.55826 1.15605 1.85102 1.30837 1.20614 0.86681 0.95622 0.91281 1.22457 0.99218 0.96871 0.98879 1.21058 0.94525 0.90130 0.92777 1.44335 1.74955 1.11182 1.02827 1.19543 1.41190 0.94535 0.83531 0.91251 1.25771 0.99693 0.97336 1.01825 1.70180 1.48617 1.03320 1.36035 0.85265 0.76766 0.77764 0.80977 1.18920 1.22250 1.21975 1.20552 0.91602 0.88965 0.93816 1.22288 0.99661 0.97928 0.97389 0.91548 0.91715 0.88551 0.88690 0.90385 0.89852 0.87211 0.92344 0.87492 0.92248 0.89777 0.89609 0.74276 0.90749 0.91340 0.89205 0.96481 0.92039 0.94213 0.98459 0.92492 0.91589 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 8.17 127.77 1.04 2.46 16 2 N -1.00 -18.95 2.78 -515.87 -1.43 -20.39 16 3 C 0.14 2.33 2.60 45.11 0.12 2.45 16 4 C -0.16 -2.23 5.46 30.69 0.17 -2.06 16 5 C 0.06 0.78 6.84 72.01 0.49 1.27 16 6 O -0.40 -6.53 10.77 -148.98 -1.60 -8.14 16 7 C 0.06 0.81 6.84 72.01 0.49 1.30 16 8 C -0.17 -2.30 5.07 30.68 0.16 -2.15 16 9 S 2.80 71.25 6.08 -56.49 -0.34 70.91 16 10 O -1.01 -32.99 16.55 -128.00 -2.12 -35.11 16 11 O -1.00 -28.88 16.70 -128.00 -2.14 -31.02 16 12 N -1.11 -26.80 5.53 -169.28 -0.94 -27.73 16 13 C 0.16 4.83 2.77 45.02 0.12 4.96 16 14 C -0.13 -3.68 5.68 30.67 0.17 -3.51 16 15 C 0.14 5.17 6.52 86.36 0.56 5.73 16 16 N -0.61 -28.66 2.99 -699.10 -2.09 -30.75 16 17 C -0.26 -13.49 9.58 84.03 0.81 -12.69 16 18 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 19 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 20 N -0.94 -54.20 11.19 21.65 0.24 -53.96 16 21 Si 0.96 43.68 29.59 68.60 2.03 45.70 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 C 0.18 8.19 5.30 86.37 0.46 8.65 16 26 C -0.13 -4.62 5.61 30.67 0.17 -4.44 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 1.27 7.35 -2.39 -0.02 1.26 16 29 H 0.10 1.25 6.38 -2.39 -0.02 1.23 16 30 H 0.10 1.63 6.92 -2.39 -0.02 1.62 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.11 7.57 -2.39 -0.02 1.09 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 1.15 6.56 -2.38 -0.02 1.13 16 38 H 0.09 1.19 7.56 -2.39 -0.02 1.17 16 39 H 0.42 8.71 8.84 -96.75 -0.85 7.86 16 40 H 0.07 2.35 7.06 -2.39 -0.02 2.33 16 41 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.09 1.90 5.60 -2.39 -0.01 1.88 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 45 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -69.84 382.47 -3.12 -72.96 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.09 Total: 17.89 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.18 Total: -0.36 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -4.22 Total: -132.83 kcal Atomic # 8 Polarization: -68.40 SS G_CDS: -5.86 Total: -74.26 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 71.25 SS G_CDS: -0.34 Total: 70.91 kcal Total: -69.84 -3.12 -72.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116115586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.107 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds