Wall clock time and date at job start Wed Apr 1 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47401 * 2 1 4 4 C 1.46501 * 120.00424 * 270.00301 * 3 2 1 5 5 C 1.52995 * 109.46961 * 270.00008 * 4 3 2 6 6 S 1.81401 * 109.46774 * 180.02562 * 5 4 3 7 7 C 1.81403 * 101.91959 * 179.97438 * 6 5 4 8 8 O 1.42101 * 108.57926 * 294.48442 * 6 5 4 9 9 O 1.42094 * 108.58398 * 65.51042 * 6 5 4 10 10 C 1.34783 * 119.99702 * 89.99873 * 3 2 1 11 11 O 1.21585 * 119.99991 * 179.97438 * 10 3 2 12 12 N 1.34779 * 119.99707 * 0.02562 * 10 3 2 13 13 C 1.46504 * 119.99730 * 179.97438 * 12 10 3 14 14 C 1.53081 * 109.43848 * 84.79387 * 13 12 10 15 15 C 1.53190 * 109.29209 * 181.23616 * 14 13 12 16 16 N 1.46921 * 108.89311 * 305.57883 * 15 14 13 17 17 C 1.36940 * 120.63187 * 233.51481 * 16 15 14 18 18 H 1.08001 * 120.00319 * 152.61971 * 17 16 15 19 19 C 1.38813 * 119.99903 * 332.62203 * 17 16 15 20 20 N 1.31624 * 120.00070 * 159.34992 * 19 17 16 21 21 Si 1.86800 * 120.00077 * 339.35529 * 19 17 16 22 22 H 1.48494 * 109.47321 * 92.87851 * 21 19 17 23 23 H 1.48501 * 109.47194 * 212.88430 * 21 19 17 24 24 H 1.48509 * 109.46983 * 332.87654 * 21 19 17 25 25 C 1.46923 * 118.74178 * 53.54201 * 16 15 14 26 26 C 1.53035 * 109.45960 * 204.99782 * 13 12 10 27 27 H 1.09006 * 109.46990 * 299.99631 * 1 2 3 28 28 H 1.08999 * 109.47217 * 59.99310 * 1 2 3 29 29 H 1.09001 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46990 * 240.00369 * 2 1 3 31 31 H 1.08999 * 109.47217 * 120.00690 * 2 1 3 32 32 H 1.09002 * 109.46991 * 29.99883 * 4 3 2 33 33 H 1.09008 * 109.47138 * 149.99536 * 4 3 2 34 34 H 1.09002 * 109.47166 * 299.99768 * 5 4 3 35 35 H 1.08995 * 109.47468 * 59.99794 * 5 4 3 36 36 H 1.08997 * 109.47175 * 60.00076 * 7 6 5 37 37 H 1.08999 * 109.46797 * 179.97438 * 7 6 5 38 38 H 1.08993 * 109.47147 * 299.99682 * 7 6 5 39 39 H 0.96998 * 120.00063 * 359.97438 * 12 10 3 40 40 H 1.08998 * 109.46073 * 324.97324 * 13 12 10 41 41 H 1.08992 * 109.38800 * 61.36034 * 14 13 12 42 42 H 1.09002 * 109.61927 * 301.25313 * 14 13 12 43 43 H 1.08999 * 109.58729 * 185.71870 * 15 14 13 44 44 H 1.09004 * 109.58886 * 65.43758 * 15 14 13 45 45 H 0.97001 * 119.99914 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.59094 * 66.17180 * 25 16 15 47 47 H 1.09001 * 109.59077 * 186.46452 * 25 16 15 48 48 H 1.09002 * 109.49848 * 58.67960 * 26 13 12 49 49 H 1.09002 * 109.52425 * 298.59433 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7104 6 16 4.0100 2.6873 -3.2809 7 6 5.7460 2.2728 -3.6051 8 8 3.2052 2.0866 -4.2862 9 8 3.9131 4.0875 -3.0595 10 6 2.2430 2.0165 1.1673 11 8 2.6488 3.1626 1.1674 12 7 2.0188 1.3809 2.3344 13 6 2.2635 2.0712 3.6032 14 6 1.0310 2.8975 3.9796 15 6 1.3019 3.6421 5.2906 16 7 1.7158 2.6710 6.3125 17 6 1.0708 2.6100 7.5190 18 1 1.0443 1.6821 8.0709 19 6 0.4509 3.7409 8.0325 20 7 -0.4889 3.6188 8.9459 21 14 0.9504 5.4361 7.4272 22 1 0.0674 5.8407 6.3040 23 1 0.8214 6.4155 8.5360 24 1 2.3598 5.3996 6.9606 25 6 2.8352 1.7669 6.0157 26 6 2.5462 1.0403 4.6983 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0283 33 1 2.0956 3.1412 -1.1383 34 1 4.3884 2.2155 -0.9507 35 1 3.8745 0.7623 -1.8408 36 1 5.8533 1.1907 -3.6802 37 1 6.0611 2.7346 -4.5409 38 1 6.3666 2.6438 -2.7895 39 1 1.6954 0.4664 2.3344 40 1 3.1231 2.7329 3.4967 41 1 0.1759 2.2340 4.1080 42 1 0.8179 3.6176 3.1895 43 1 0.3945 4.1508 5.6162 44 1 2.0960 4.3732 5.1384 45 1 -0.9223 4.4091 9.3045 46 1 3.7554 2.3435 5.9207 47 1 2.9411 1.0398 6.8208 48 1 3.4107 0.4388 4.4173 49 1 1.6777 0.3934 4.8226 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116370325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:29 Heat of formation + Delta-G solvation = -64.811007 kcal Electronic energy + Delta-G solvation = -29643.512634 eV Core-core repulsion = 25541.466295 eV Total energy + Delta-G solvation = -4102.046339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.49751 -38.03058 -37.36954 -36.46054 -36.28598 -34.77036 -32.92176 -31.92071 -30.44388 -30.37536 -30.12798 -29.34923 -25.27414 -24.19311 -23.53688 -22.84562 -21.73805 -20.03825 -19.53283 -19.28464 -18.19445 -17.44015 -16.83496 -16.58885 -16.49113 -16.32711 -15.49727 -15.23106 -14.75901 -14.54832 -14.21115 -14.18027 -14.02384 -13.77953 -13.76110 -13.68309 -13.55533 -13.00058 -12.90041 -12.83425 -12.47022 -12.38951 -12.35882 -12.30085 -11.96167 -11.79480 -11.67897 -11.57786 -11.49311 -11.15914 -11.01461 -10.83991 -10.60806 -10.20321 -10.12239 -10.00948 -9.79528 -9.49269 -9.11757 -8.72614 -8.58216 -6.99366 -5.94804 -3.30954 -0.48433 2.28287 2.45938 3.07638 3.27323 3.36651 3.51901 3.55662 3.57239 3.79598 4.18062 4.22827 4.30993 4.50095 4.52128 4.54912 4.81700 4.86071 4.94061 4.95400 5.11499 5.15317 5.16949 5.30464 5.37165 5.40535 5.42494 5.46264 5.65256 5.82381 5.87075 6.02626 6.07968 6.11691 6.17184 6.31460 6.43109 6.54669 6.63880 6.67922 6.71412 6.81131 6.96424 7.88259 7.96070 8.32309 8.56319 8.93539 9.72249 10.09570 11.20927 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.002385 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.899462 B =11737.664809 C =12323.184653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 N -0.627 5.627 4 C 0.148 3.852 5 C -0.633 4.633 6 S 2.425 3.575 7 C -0.655 4.655 8 O -0.941 6.941 9 O -0.931 6.931 10 C 0.703 3.297 11 O -0.582 6.582 12 N -0.737 5.737 13 C 0.167 3.833 14 C -0.140 4.140 15 C 0.129 3.871 16 N -0.606 5.606 17 C -0.261 4.261 18 H 0.086 0.914 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.152 3.848 26 C -0.140 4.140 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.392 0.608 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.028 0.972 45 H 0.263 0.737 46 H 0.025 0.975 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.919 -11.011 -25.663 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.019 4.019 3 N -0.365 5.365 4 C 0.022 3.978 5 C -0.763 4.763 6 S 2.606 3.394 7 C -0.805 4.805 8 O -0.938 6.938 9 O -0.928 6.928 10 C 0.404 3.596 11 O -0.460 6.460 12 N -0.391 5.391 13 C 0.063 3.937 14 C -0.181 4.181 15 C 0.002 3.998 16 N -0.330 5.330 17 C -0.389 4.389 18 H 0.103 0.897 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.026 3.974 26 C -0.179 4.179 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.228 0.772 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.539 -9.575 -25.988 29.293 hybrid contribution 0.646 -0.092 0.170 0.674 sum 10.185 -9.666 -25.818 29.389 Atomic orbital electron populations 1.22266 0.95468 1.02603 1.03210 1.21546 0.94874 0.82404 1.03123 1.47115 1.70587 1.14390 1.04375 1.20855 0.90810 1.00351 0.85755 1.30851 1.08181 1.14726 1.22519 1.07726 0.78170 0.76282 0.77242 1.30260 1.25532 1.12366 1.12297 1.93603 1.65730 1.79037 1.55401 1.93641 1.85562 1.28123 1.85518 1.15977 0.78645 0.84545 0.80396 1.90948 1.52577 1.16390 1.86050 1.45621 1.71392 1.17282 1.04838 1.20897 0.98730 0.93931 0.80192 1.22403 0.97568 0.99478 0.98649 1.21315 0.98833 0.91870 0.87743 1.44402 1.34897 1.40195 1.13521 1.18900 1.28268 0.96244 0.95508 0.89672 1.25276 0.97848 0.97747 0.96651 1.69837 1.24159 1.29397 1.31718 0.86970 0.79672 0.85499 0.76622 1.21551 1.23154 1.19461 1.20853 0.90009 0.92913 0.93665 1.22333 1.01227 0.97861 0.96527 0.91848 0.92010 0.91214 0.90061 0.90499 0.89035 0.88010 0.84282 0.85000 0.85393 0.85175 0.85187 0.77235 0.89919 0.91787 0.92259 0.90763 0.95459 0.92763 0.95722 0.91366 0.92255 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.10 0.68 5.89 -4.04 -0.02 0.65 16 3 N -0.63 -6.22 2.47 -179.42 -0.44 -6.66 16 4 C 0.15 1.32 5.41 -4.04 -0.02 1.30 16 5 C -0.63 -3.77 6.13 37.15 0.23 -3.54 16 6 S 2.43 15.58 5.36 -107.50 -0.58 15.00 16 7 C -0.65 -1.96 10.62 101.05 1.07 -0.89 16 8 O -0.94 -8.79 18.10 -57.83 -1.05 -9.84 16 9 O -0.93 -10.49 18.10 -57.83 -1.05 -11.54 16 10 C 0.70 9.81 8.24 -86.91 -0.72 9.09 16 11 O -0.58 -10.58 15.58 5.29 0.08 -10.50 16 12 N -0.74 -9.49 4.94 -58.61 -0.29 -9.78 16 13 C 0.17 2.66 2.41 -67.87 -0.16 2.49 16 14 C -0.14 -2.63 5.66 -26.59 -0.15 -2.78 16 15 C 0.13 2.88 4.20 -3.71 -0.02 2.87 16 16 N -0.61 -14.25 2.77 -172.32 -0.48 -14.73 16 17 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 18 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 20 N -0.91 -27.85 13.97 55.49 0.78 -27.08 16 21 Si 0.88 22.82 24.34 -169.99 -4.14 18.68 16 22 H -0.29 -7.27 6.62 56.52 0.37 -6.90 16 23 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.27 -6.89 6.64 56.52 0.38 -6.51 16 25 C 0.15 2.87 6.52 -3.71 -0.02 2.84 16 26 C -0.14 -2.09 5.55 -26.61 -0.15 -2.24 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.08 0.44 6.36 -51.93 -0.33 0.11 16 32 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.10 1.13 7.42 -51.92 -0.39 0.75 16 34 H 0.14 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.13 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.39 3.96 6.33 -40.82 -0.26 3.71 16 40 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.83 4.50 -51.93 -0.23 1.60 16 44 H 0.03 0.62 7.07 -51.93 -0.37 0.26 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -39.67 397.68 -9.32 -48.99 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.33 Total: -0.76 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 0.18 Total: 2.22 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.44 Total: -58.25 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -2.01 Total: -31.88 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.14 Total: 18.68 kcal Atomic # 16 Polarization: 15.58 SS G_CDS: -0.58 Total: 15.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.67 -9.32 -48.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116370325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.824 kcal (2) G-P(sol) polarization free energy of solvation -39.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds