Wall clock time and date at job start Wed Apr 1 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47401 * 2 1 4 4 C 1.46501 * 120.00424 * 270.00301 * 3 2 1 5 5 C 1.52995 * 109.46961 * 270.00008 * 4 3 2 6 6 S 1.81401 * 109.46774 * 180.02562 * 5 4 3 7 7 C 1.81403 * 101.91959 * 179.97438 * 6 5 4 8 8 O 1.42101 * 108.57926 * 294.48442 * 6 5 4 9 9 O 1.42094 * 108.58398 * 65.51042 * 6 5 4 10 10 C 1.34783 * 119.99702 * 89.99873 * 3 2 1 11 11 O 1.21585 * 119.99991 * 179.97438 * 10 3 2 12 12 N 1.34779 * 119.99707 * 0.02562 * 10 3 2 13 13 C 1.46504 * 119.99730 * 179.97438 * 12 10 3 14 14 C 1.53081 * 109.43848 * 84.79387 * 13 12 10 15 15 C 1.53190 * 109.29209 * 181.23616 * 14 13 12 16 16 N 1.46921 * 108.89311 * 305.57883 * 15 14 13 17 17 C 1.36940 * 120.63187 * 233.51481 * 16 15 14 18 18 H 1.08001 * 120.00319 * 152.61971 * 17 16 15 19 19 C 1.38813 * 119.99903 * 332.62203 * 17 16 15 20 20 N 1.31624 * 120.00070 * 159.34992 * 19 17 16 21 21 Si 1.86800 * 120.00077 * 339.35529 * 19 17 16 22 22 H 1.48494 * 109.47321 * 92.87851 * 21 19 17 23 23 H 1.48501 * 109.47194 * 212.88430 * 21 19 17 24 24 H 1.48509 * 109.46983 * 332.87654 * 21 19 17 25 25 C 1.46923 * 118.74178 * 53.54201 * 16 15 14 26 26 C 1.53035 * 109.45960 * 204.99782 * 13 12 10 27 27 H 1.09006 * 109.46990 * 299.99631 * 1 2 3 28 28 H 1.08999 * 109.47217 * 59.99310 * 1 2 3 29 29 H 1.09001 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46990 * 240.00369 * 2 1 3 31 31 H 1.08999 * 109.47217 * 120.00690 * 2 1 3 32 32 H 1.09002 * 109.46991 * 29.99883 * 4 3 2 33 33 H 1.09008 * 109.47138 * 149.99536 * 4 3 2 34 34 H 1.09002 * 109.47166 * 299.99768 * 5 4 3 35 35 H 1.08995 * 109.47468 * 59.99794 * 5 4 3 36 36 H 1.08997 * 109.47175 * 60.00076 * 7 6 5 37 37 H 1.08999 * 109.46797 * 179.97438 * 7 6 5 38 38 H 1.08993 * 109.47147 * 299.99682 * 7 6 5 39 39 H 0.96998 * 120.00063 * 359.97438 * 12 10 3 40 40 H 1.08998 * 109.46073 * 324.97324 * 13 12 10 41 41 H 1.08992 * 109.38800 * 61.36034 * 14 13 12 42 42 H 1.09002 * 109.61927 * 301.25313 * 14 13 12 43 43 H 1.08999 * 109.58729 * 185.71870 * 15 14 13 44 44 H 1.09004 * 109.58886 * 65.43758 * 15 14 13 45 45 H 0.97001 * 119.99914 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.59094 * 66.17180 * 25 16 15 47 47 H 1.09001 * 109.59077 * 186.46452 * 25 16 15 48 48 H 1.09002 * 109.49848 * 58.67960 * 26 13 12 49 49 H 1.09002 * 109.52425 * 298.59433 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7104 6 16 4.0100 2.6873 -3.2809 7 6 5.7460 2.2728 -3.6051 8 8 3.2052 2.0866 -4.2862 9 8 3.9131 4.0875 -3.0595 10 6 2.2430 2.0165 1.1673 11 8 2.6488 3.1626 1.1674 12 7 2.0188 1.3809 2.3344 13 6 2.2635 2.0712 3.6032 14 6 1.0310 2.8975 3.9796 15 6 1.3019 3.6421 5.2906 16 7 1.7158 2.6710 6.3125 17 6 1.0708 2.6100 7.5190 18 1 1.0443 1.6821 8.0709 19 6 0.4509 3.7409 8.0325 20 7 -0.4889 3.6188 8.9459 21 14 0.9504 5.4361 7.4272 22 1 0.0674 5.8407 6.3040 23 1 0.8214 6.4155 8.5360 24 1 2.3598 5.3996 6.9606 25 6 2.8352 1.7669 6.0157 26 6 2.5462 1.0403 4.6983 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0283 33 1 2.0956 3.1412 -1.1383 34 1 4.3884 2.2155 -0.9507 35 1 3.8745 0.7623 -1.8408 36 1 5.8533 1.1907 -3.6802 37 1 6.0611 2.7346 -4.5409 38 1 6.3666 2.6438 -2.7895 39 1 1.6954 0.4664 2.3344 40 1 3.1231 2.7329 3.4967 41 1 0.1759 2.2340 4.1080 42 1 0.8179 3.6176 3.1895 43 1 0.3945 4.1508 5.6162 44 1 2.0960 4.3732 5.1384 45 1 -0.9223 4.4091 9.3045 46 1 3.7554 2.3435 5.9207 47 1 2.9411 1.0398 6.8208 48 1 3.4107 0.4388 4.4173 49 1 1.6777 0.3934 4.8226 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116370325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:28 Heat of formation + Delta-G solvation = -96.613078 kcal Electronic energy + Delta-G solvation = -29644.891676 eV Core-core repulsion = 25541.466295 eV Total energy + Delta-G solvation = -4103.425381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.52509 -39.47311 -38.00380 -37.33671 -37.03168 -36.17230 -34.23919 -33.21449 -31.98175 -31.69816 -30.60509 -30.11375 -26.90071 -25.00988 -24.45098 -24.41661 -23.23994 -21.37642 -20.67254 -19.81647 -19.21490 -18.68722 -18.09185 -17.59437 -17.10927 -17.06343 -16.90383 -16.29684 -15.96774 -15.74326 -15.55383 -15.33895 -15.02133 -14.93319 -14.75582 -14.47356 -14.15810 -14.05706 -13.95966 -13.91348 -13.77197 -13.43861 -13.37778 -13.12975 -13.03436 -12.88626 -12.71208 -12.57789 -12.33617 -12.22709 -12.13057 -12.05728 -11.96561 -11.76881 -11.63558 -11.49509 -11.45421 -11.16255 -10.76072 -10.19637 -9.63738 -8.97481 -8.18222 -5.48981 -0.95686 1.28348 1.38561 1.46740 1.56216 1.86393 2.08015 2.39552 2.71594 2.92583 3.03307 3.12270 3.34035 3.63154 3.75266 3.81009 3.94980 4.03074 4.11677 4.20485 4.23619 4.29271 4.30629 4.35713 4.45145 4.46106 4.54270 4.68058 4.69168 4.81542 4.84063 4.89810 4.93671 4.95715 4.98903 5.01696 5.08359 5.15215 5.35216 5.41122 5.48405 5.55380 5.85485 5.88696 6.12418 6.89753 6.94394 7.53668 7.60735 8.02323 9.01286 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.002385 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.899462 B =11737.664809 C =12323.184653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 N -0.618 5.618 4 C 0.132 3.868 5 C -0.622 4.622 6 S 2.429 3.571 7 C -0.634 4.634 8 O -0.975 6.975 9 O -0.993 6.993 10 C 0.698 3.302 11 O -0.631 6.631 12 N -0.724 5.724 13 C 0.177 3.823 14 C -0.129 4.129 15 C 0.126 3.874 16 N -0.619 5.619 17 C -0.242 4.242 18 H 0.063 0.937 19 C -0.031 4.031 20 N -0.953 5.953 21 Si 0.936 3.064 22 H -0.284 1.284 23 H -0.309 1.309 24 H -0.264 1.264 25 C 0.143 3.857 26 C -0.123 4.123 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.173 0.827 36 H 0.160 0.840 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.409 0.591 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.025 0.975 45 H 0.261 0.739 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.099 0.901 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.145 -13.871 -28.098 33.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.025 4.025 3 N -0.354 5.354 4 C 0.007 3.993 5 C -0.752 4.752 6 S 2.615 3.385 7 C -0.787 4.787 8 O -0.972 6.972 9 O -0.990 6.990 10 C 0.399 3.601 11 O -0.512 6.512 12 N -0.380 5.380 13 C 0.072 3.928 14 C -0.170 4.170 15 C 0.000 4.000 16 N -0.344 5.344 17 C -0.372 4.372 18 H 0.081 0.919 19 C -0.226 4.226 20 N -0.600 5.600 21 Si 0.766 3.234 22 H -0.211 1.211 23 H -0.238 1.238 24 H -0.189 1.189 25 C 0.018 3.982 26 C -0.162 4.162 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.191 0.809 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.248 0.752 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.744 -12.486 -28.497 33.255 hybrid contribution 0.007 0.664 0.852 1.081 sum 11.750 -11.822 -27.645 32.281 Atomic orbital electron populations 1.22261 0.95770 1.03565 1.01859 1.21890 0.94600 0.80471 1.05523 1.47145 1.69506 1.15535 1.03241 1.21038 0.93570 0.98779 0.85916 1.30716 1.05879 1.17186 1.21435 1.07275 0.79747 0.74763 0.76715 1.30064 1.20585 1.14720 1.13329 1.93554 1.68192 1.79032 1.56471 1.93569 1.87243 1.31950 1.86230 1.16185 0.78396 0.84060 0.81453 1.90921 1.54735 1.18684 1.86873 1.45245 1.71348 1.17773 1.03599 1.20563 0.96457 0.93961 0.81865 1.22234 0.99093 0.99385 0.96281 1.21251 0.97437 0.92091 0.89177 1.44540 1.36283 1.41134 1.12411 1.18911 1.26860 0.95059 0.96321 0.91897 1.25812 0.98485 1.00738 0.97605 1.69941 1.26004 1.29959 1.34072 0.86081 0.79500 0.81906 0.75912 1.21101 1.23807 1.18895 1.21116 0.88657 0.92465 0.95927 1.22142 1.03132 0.97219 0.93705 0.94151 0.92463 0.89082 0.86711 0.89047 0.86786 0.91329 0.84558 0.80897 0.82187 0.84322 0.83610 0.75245 0.91442 0.91891 0.92964 0.93402 0.95758 0.93008 0.94832 0.91050 0.88270 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 10.24 71.98 0.74 -1.16 16 2 C 0.10 0.89 5.89 86.38 0.51 1.40 16 3 N -0.62 -10.87 2.47 -839.82 -2.08 -12.95 16 4 C 0.13 2.20 5.41 86.38 0.47 2.66 16 5 C -0.62 -5.88 6.13 71.98 0.44 -5.44 16 6 S 2.43 28.44 5.36 -56.49 -0.30 28.14 16 7 C -0.63 -1.50 10.62 113.37 1.20 -0.30 16 8 O -0.98 -17.24 18.10 -127.37 -2.31 -19.54 16 9 O -0.99 -23.29 18.10 -127.37 -2.30 -25.60 16 10 C 0.70 18.46 8.24 179.05 1.48 19.94 16 11 O -0.63 -22.98 15.58 -3.98 -0.06 -23.04 16 12 N -0.72 -16.89 4.94 -457.61 -2.26 -19.15 16 13 C 0.18 5.31 2.41 45.03 0.11 5.42 16 14 C -0.13 -4.77 5.66 30.68 0.17 -4.59 16 15 C 0.13 5.65 4.20 86.36 0.36 6.02 16 16 N -0.62 -28.78 2.77 -699.09 -1.94 -30.72 16 17 C -0.24 -13.53 10.03 84.03 0.84 -12.69 16 18 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 19 C -0.03 -1.85 5.23 84.86 0.44 -1.41 16 20 N -0.95 -60.12 13.97 21.65 0.30 -59.82 16 21 Si 0.94 48.29 24.34 68.60 1.67 49.96 16 22 H -0.28 -14.26 6.62 99.48 0.66 -13.60 16 23 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 24 H -0.26 -13.21 6.64 99.48 0.66 -12.55 16 25 C 0.14 5.12 6.52 86.37 0.56 5.68 16 26 C -0.12 -3.28 5.55 30.67 0.17 -3.11 16 27 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.37 8.07 -2.38 -0.02 0.35 16 31 H 0.09 0.61 6.36 -2.39 -0.02 0.59 16 32 H 0.11 1.32 8.07 -2.39 -0.02 1.31 16 33 H 0.07 1.61 7.42 -2.38 -0.02 1.59 16 34 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.17 0.13 8.14 -2.39 -0.02 0.12 16 36 H 0.16 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.41 6.82 6.33 -92.71 -0.59 6.23 16 40 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 2.39 4.50 -2.39 -0.01 2.37 16 44 H 0.02 1.11 7.07 -2.38 -0.02 1.09 16 45 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 2.49 7.93 -2.39 -0.02 2.47 16 48 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -91.05 397.68 -1.52 -92.57 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.26 Total: 7.74 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 7.50 Total: 12.41 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -5.97 Total: -122.63 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -4.67 Total: -68.18 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.67 Total: 49.96 kcal Atomic # 16 Polarization: 28.44 SS G_CDS: -0.30 Total: 28.14 kcal Total: -91.05 -1.52 -92.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116370325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.044 kcal (2) G-P(sol) polarization free energy of solvation -91.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds