Wall clock time and date at job start Wed Apr 1 2020 05:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81401 * 109.46959 * 2 1 4 4 O 1.42101 * 110.54270 * 68.37494 * 3 2 1 5 5 O 1.42103 * 110.54430 * 291.62393 * 3 2 1 6 6 N 1.65598 * 104.45135 * 180.02562 * 3 2 1 7 7 C 1.46501 * 119.99613 * 270.00216 * 6 3 2 8 8 C 1.46495 * 120.00147 * 89.99645 * 6 3 2 9 9 C 1.50705 * 109.46692 * 95.00222 * 8 6 3 10 10 O 1.21278 * 120.00369 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99576 * 179.97438 * 9 8 6 12 12 C 1.46501 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.52147 * 35.08435 * 12 11 9 14 14 C 1.53070 * 109.62552 * 155.11193 * 12 11 9 15 15 C 1.53043 * 109.66102 * 181.17228 * 14 12 11 16 16 C 1.53189 * 109.31084 * 298.69924 * 15 14 12 17 17 H 1.09005 * 109.70350 * 294.77402 * 16 15 14 18 18 C 1.53000 * 109.58886 * 174.42468 * 16 15 14 19 19 N 1.46927 * 108.77565 * 54.63257 * 16 15 14 20 20 C 1.36941 * 120.62884 * 126.41912 * 19 16 15 21 21 H 1.08001 * 119.99264 * 330.13411 * 20 19 16 22 22 C 1.38806 * 120.00166 * 150.13932 * 20 19 16 23 23 N 1.31624 * 120.00191 * 344.49933 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 164.49608 * 22 20 19 25 25 H 1.48503 * 109.47195 * 89.99708 * 24 22 20 26 26 H 1.48498 * 109.47355 * 210.00264 * 24 22 20 27 27 H 1.48504 * 109.46850 * 330.00278 * 24 22 20 28 28 C 1.46925 * 118.73822 * 306.39084 * 19 16 15 29 29 H 1.08999 * 109.47352 * 299.99657 * 1 2 3 30 30 H 1.09000 * 109.47037 * 60.00428 * 1 2 3 31 31 H 1.08997 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47352 * 240.00342 * 2 1 3 33 33 H 1.09000 * 109.47037 * 119.99572 * 2 1 3 34 34 H 1.09002 * 109.47007 * 269.99687 * 7 6 3 35 35 H 1.09000 * 109.47417 * 29.99776 * 7 6 3 36 36 H 1.09000 * 109.47430 * 150.00170 * 7 6 3 37 37 H 1.08996 * 109.47345 * 335.00643 * 8 6 3 38 38 H 1.09000 * 109.47037 * 214.99831 * 8 6 3 39 39 H 0.97005 * 120.00508 * 0.02562 * 11 9 8 40 40 H 1.08993 * 109.34868 * 61.14365 * 14 12 11 41 41 H 1.09011 * 109.43966 * 301.25199 * 14 12 11 42 42 H 1.09001 * 109.49711 * 178.74319 * 15 14 12 43 43 H 1.09005 * 109.52387 * 58.66384 * 15 14 12 44 44 H 1.09012 * 109.46617 * 300.70754 * 18 16 15 45 45 H 1.08994 * 109.47116 * 60.70190 * 18 16 15 46 46 H 1.08991 * 109.47215 * 180.71347 * 18 16 15 47 47 H 0.96995 * 120.00379 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.58079 * 173.39849 * 28 19 16 49 49 H 1.08997 * 109.58764 * 293.68016 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5144 1.5011 1.2678 8 6 4.5134 1.5015 -1.2697 9 6 4.9941 2.8802 -1.6428 10 8 4.7512 3.8234 -0.9201 11 7 5.6941 3.0650 -2.7796 12 6 6.1619 4.4052 -3.1421 13 1 6.4321 4.9532 -2.2394 14 6 7.3862 4.2932 -4.0541 15 6 7.8932 5.6927 -4.4096 16 6 6.7970 6.4524 -5.1632 17 1 6.6056 5.9676 -6.1206 18 6 7.2436 7.8965 -5.3999 19 7 5.5717 6.4423 -4.3524 20 6 4.9302 7.6119 -4.0430 21 1 5.4944 8.5277 -3.9455 22 6 3.5550 7.6205 -3.8547 23 7 2.8285 6.6014 -4.2625 24 14 2.7353 9.0781 -3.0224 25 1 2.3514 10.0818 -4.0472 26 1 1.5215 8.6180 -2.3010 27 1 3.6814 9.6933 -2.0571 28 6 5.0476 5.1534 -3.8803 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.7854 2.5089 1.5825 35 1 3.8830 1.0407 2.0276 36 1 5.4182 0.9060 1.1370 37 1 3.8526 1.1237 -2.0498 38 1 5.3691 0.8346 -1.1638 39 1 5.8882 2.3107 -3.3578 40 1 7.1097 3.7645 -4.9663 41 1 8.1730 3.7418 -3.5391 42 1 8.7780 5.6096 -5.0408 43 1 8.1469 6.2311 -3.4964 44 1 7.4393 8.3779 -4.4417 45 1 8.1525 7.9017 -6.0014 46 1 6.4572 8.4386 -5.9249 47 1 1.8675 6.6075 -4.1313 48 1 4.2115 5.3253 -3.2024 49 1 4.7119 4.5615 -4.7318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132393202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:41 Heat of formation + Delta-G solvation = -77.895156 kcal Electronic energy + Delta-G solvation = -30586.175240 eV Core-core repulsion = 26483.561529 eV Total energy + Delta-G solvation = -4102.613711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -39.50536 -37.67841 -37.09234 -35.95033 -35.70255 -34.24582 -33.39866 -32.71321 -30.86999 -29.78407 -28.61632 -26.07868 -25.30427 -24.66617 -24.00423 -22.18688 -20.88517 -20.00720 -19.25573 -18.79190 -17.81184 -17.14548 -16.60829 -16.27377 -16.19858 -15.53132 -15.18703 -14.69640 -14.49587 -14.09393 -14.07471 -13.72058 -13.68398 -13.45024 -13.29075 -13.05708 -12.92066 -12.75274 -12.63270 -12.32338 -12.20821 -12.00035 -11.84454 -11.81634 -11.69216 -11.53666 -11.33458 -11.04481 -10.79829 -10.72962 -10.59557 -10.44938 -10.32067 -10.18062 -9.95017 -9.86094 -9.57750 -9.35203 -8.84229 -8.43110 -8.29789 -6.49270 -5.61878 -3.07303 0.12019 2.51338 3.07227 3.50068 3.59383 3.59972 3.61322 3.88543 3.99670 4.29031 4.50795 4.55669 4.64365 4.88665 5.04208 5.07166 5.14561 5.27888 5.34984 5.37932 5.41639 5.45002 5.58130 5.59919 5.66007 5.71926 5.75800 5.86227 6.04042 6.16095 6.27857 6.33328 6.37915 6.45578 6.51901 6.58485 6.69002 6.81978 7.03926 7.12145 7.20075 7.42983 7.87980 7.96319 8.02080 8.62399 8.73819 9.36336 10.00681 10.55972 11.46138 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.003680 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.489098 B = 7607.693763 C = 9095.476717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.637 4.637 3 S 2.603 3.397 4 O -0.947 6.947 5 O -0.930 6.930 6 N -0.985 5.985 7 C 0.097 3.903 8 C 0.107 3.893 9 C 0.491 3.509 10 O -0.518 6.518 11 N -0.721 5.721 12 C 0.117 3.883 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.024 0.976 18 C -0.136 4.136 19 N -0.583 5.583 20 C -0.258 4.258 21 H 0.069 0.931 22 C 0.009 3.991 23 N -0.896 5.896 24 Si 0.897 3.103 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.168 3.832 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.391 0.609 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.036 0.964 46 H 0.061 0.939 47 H 0.254 0.746 48 H 0.094 0.906 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -19.725 6.184 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.766 4.766 3 S 2.694 3.306 4 O -0.937 6.937 5 O -0.920 6.920 6 N -0.822 5.822 7 C -0.049 4.049 8 C -0.023 4.023 9 C 0.274 3.726 10 O -0.392 6.392 11 N -0.373 5.373 12 C 0.012 3.988 13 H 0.098 0.902 14 C -0.153 4.153 15 C -0.166 4.166 16 C 0.058 3.942 17 H 0.041 0.959 18 C -0.193 4.193 19 N -0.307 5.307 20 C -0.387 4.387 21 H 0.086 0.914 22 C -0.191 4.191 23 N -0.539 5.539 24 Si 0.727 3.273 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.204 1.204 28 C 0.041 3.959 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.224 0.776 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.112 0.888 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.895 -18.235 6.758 19.833 hybrid contribution -0.222 -0.529 0.084 0.580 sum 3.673 -18.764 6.842 20.307 Atomic orbital electron populations 1.21505 0.90508 1.04870 1.03777 1.30624 1.07313 1.27386 1.11233 1.05569 0.72931 0.77148 0.74922 1.93592 1.82908 1.71735 1.45486 1.93695 1.82515 1.71204 1.44634 1.57147 1.24619 1.89580 1.10838 1.21477 0.96981 1.03152 0.83253 1.21145 0.99027 0.96040 0.86094 1.20919 0.78724 0.91285 0.81663 1.90750 1.54723 1.42535 1.51194 1.46034 1.56642 1.11198 1.23420 1.21960 0.96079 0.81936 0.98856 0.90162 1.21672 0.96636 0.97988 0.98994 1.22043 0.98451 0.95345 1.00734 1.20478 0.87225 0.93987 0.92477 0.95862 1.21798 0.99270 0.97389 1.00891 1.44013 1.26237 1.03077 1.57336 1.19073 0.88938 0.88016 1.42705 0.91378 1.25086 0.96506 0.97352 1.00112 1.69975 1.05246 1.31218 1.47442 0.86385 0.79238 0.82211 0.79458 1.21505 1.21507 1.20436 1.21069 0.93752 0.84915 0.96188 0.90962 0.90690 0.90117 0.85144 0.85332 0.91531 0.91206 0.91170 0.87389 0.87597 0.77618 0.92333 0.93223 0.92782 0.92142 0.92852 0.94449 0.91980 0.93587 0.88768 0.96527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.92 37.16 0.37 -0.81 16 2 C -0.64 -4.92 6.90 37.16 0.26 -4.66 16 3 S 2.60 35.64 5.32 -107.50 -0.57 35.07 16 4 O -0.95 -16.03 17.09 -57.54 -0.98 -17.01 16 5 O -0.93 -17.29 16.98 -57.54 -0.98 -18.26 16 6 N -0.99 -11.89 2.61 -123.05 -0.32 -12.21 16 7 C 0.10 0.96 10.23 59.85 0.61 1.57 16 8 C 0.11 1.20 5.76 -5.19 -0.03 1.17 16 9 C 0.49 8.53 7.86 -10.98 -0.09 8.44 16 10 O -0.52 -11.90 16.09 5.56 0.09 -11.81 16 11 N -0.72 -11.58 5.08 -53.67 -0.27 -11.85 16 12 C 0.12 2.33 2.61 -67.80 -0.18 2.15 16 13 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 14 C -0.11 -1.85 5.36 -26.67 -0.14 -2.00 16 15 C -0.13 -2.18 5.37 -26.61 -0.14 -2.32 16 16 C 0.16 3.47 3.50 -67.60 -0.24 3.24 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.63 7.95 37.16 0.30 -2.34 16 19 N -0.58 -15.07 2.99 -164.78 -0.49 -15.57 16 20 C -0.26 -7.35 8.57 -15.06 -0.13 -7.48 16 21 H 0.07 1.89 6.24 -52.49 -0.33 1.56 16 22 C 0.01 0.27 4.94 -17.43 -0.09 0.18 16 23 N -0.90 -27.98 11.23 55.49 0.62 -27.36 16 24 Si 0.90 23.55 29.58 -169.99 -5.03 18.52 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 27 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.17 4.24 4.85 -3.71 -0.02 4.22 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 36 H 0.07 0.47 7.94 -51.93 -0.41 0.06 16 37 H 0.11 1.00 7.61 -51.93 -0.39 0.60 16 38 H 0.11 0.69 7.96 -51.93 -0.41 0.28 16 39 H 0.39 4.57 8.61 -40.82 -0.35 4.22 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 1.05 7.44 -51.92 -0.39 0.67 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 1.30 7.62 -51.93 -0.40 0.90 16 47 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 48 H 0.09 2.86 6.15 -51.93 -0.32 2.54 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -41.09 401.20 -9.84 -50.92 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.43 Total: 2.14 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 0.48 Total: 1.37 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.46 Total: -66.98 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.87 Total: -47.09 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.03 Total: 18.52 kcal Atomic # 16 Polarization: 35.64 SS G_CDS: -0.57 Total: 35.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -41.09 -9.84 -50.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132393202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.975 kcal (2) G-P(sol) polarization free energy of solvation -41.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds