Wall clock time and date at job start Wed Apr 1 2020 05:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81401 * 109.46959 * 2 1 4 4 O 1.42101 * 110.54270 * 68.37494 * 3 2 1 5 5 O 1.42103 * 110.54430 * 291.62393 * 3 2 1 6 6 N 1.65598 * 104.45135 * 180.02562 * 3 2 1 7 7 C 1.46501 * 119.99613 * 270.00216 * 6 3 2 8 8 C 1.46495 * 120.00147 * 89.99645 * 6 3 2 9 9 C 1.50705 * 109.46692 * 95.00222 * 8 6 3 10 10 O 1.21278 * 120.00369 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99576 * 179.97438 * 9 8 6 12 12 C 1.46501 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.52147 * 35.08435 * 12 11 9 14 14 C 1.53070 * 109.62552 * 155.11193 * 12 11 9 15 15 C 1.53043 * 109.66102 * 181.17228 * 14 12 11 16 16 C 1.53189 * 109.31084 * 298.69924 * 15 14 12 17 17 H 1.09005 * 109.70350 * 294.77402 * 16 15 14 18 18 C 1.53000 * 109.58886 * 174.42468 * 16 15 14 19 19 N 1.46927 * 108.77565 * 54.63257 * 16 15 14 20 20 C 1.36941 * 120.62884 * 126.41912 * 19 16 15 21 21 H 1.08001 * 119.99264 * 330.13411 * 20 19 16 22 22 C 1.38806 * 120.00166 * 150.13932 * 20 19 16 23 23 N 1.31624 * 120.00191 * 344.49933 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 164.49608 * 22 20 19 25 25 H 1.48503 * 109.47195 * 89.99708 * 24 22 20 26 26 H 1.48498 * 109.47355 * 210.00264 * 24 22 20 27 27 H 1.48504 * 109.46850 * 330.00278 * 24 22 20 28 28 C 1.46925 * 118.73822 * 306.39084 * 19 16 15 29 29 H 1.08999 * 109.47352 * 299.99657 * 1 2 3 30 30 H 1.09000 * 109.47037 * 60.00428 * 1 2 3 31 31 H 1.08997 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47352 * 240.00342 * 2 1 3 33 33 H 1.09000 * 109.47037 * 119.99572 * 2 1 3 34 34 H 1.09002 * 109.47007 * 269.99687 * 7 6 3 35 35 H 1.09000 * 109.47417 * 29.99776 * 7 6 3 36 36 H 1.09000 * 109.47430 * 150.00170 * 7 6 3 37 37 H 1.08996 * 109.47345 * 335.00643 * 8 6 3 38 38 H 1.09000 * 109.47037 * 214.99831 * 8 6 3 39 39 H 0.97005 * 120.00508 * 0.02562 * 11 9 8 40 40 H 1.08993 * 109.34868 * 61.14365 * 14 12 11 41 41 H 1.09011 * 109.43966 * 301.25199 * 14 12 11 42 42 H 1.09001 * 109.49711 * 178.74319 * 15 14 12 43 43 H 1.09005 * 109.52387 * 58.66384 * 15 14 12 44 44 H 1.09012 * 109.46617 * 300.70754 * 18 16 15 45 45 H 1.08994 * 109.47116 * 60.70190 * 18 16 15 46 46 H 1.08991 * 109.47215 * 180.71347 * 18 16 15 47 47 H 0.96995 * 120.00379 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.58079 * 173.39849 * 28 19 16 49 49 H 1.08997 * 109.58764 * 293.68016 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5144 1.5011 1.2678 8 6 4.5134 1.5015 -1.2697 9 6 4.9941 2.8802 -1.6428 10 8 4.7512 3.8234 -0.9201 11 7 5.6941 3.0650 -2.7796 12 6 6.1619 4.4052 -3.1421 13 1 6.4321 4.9532 -2.2394 14 6 7.3862 4.2932 -4.0541 15 6 7.8932 5.6927 -4.4096 16 6 6.7970 6.4524 -5.1632 17 1 6.6056 5.9676 -6.1206 18 6 7.2436 7.8965 -5.3999 19 7 5.5717 6.4423 -4.3524 20 6 4.9302 7.6119 -4.0430 21 1 5.4944 8.5277 -3.9455 22 6 3.5550 7.6205 -3.8547 23 7 2.8285 6.6014 -4.2625 24 14 2.7353 9.0781 -3.0224 25 1 2.3514 10.0818 -4.0472 26 1 1.5215 8.6180 -2.3010 27 1 3.6814 9.6933 -2.0571 28 6 5.0476 5.1534 -3.8803 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.7854 2.5089 1.5825 35 1 3.8830 1.0407 2.0276 36 1 5.4182 0.9060 1.1370 37 1 3.8526 1.1237 -2.0498 38 1 5.3691 0.8346 -1.1638 39 1 5.8882 2.3107 -3.3578 40 1 7.1097 3.7645 -4.9663 41 1 8.1730 3.7418 -3.5391 42 1 8.7780 5.6096 -5.0408 43 1 8.1469 6.2311 -3.4964 44 1 7.4393 8.3779 -4.4417 45 1 8.1525 7.9017 -6.0014 46 1 6.4572 8.4386 -5.9249 47 1 1.8675 6.6075 -4.1313 48 1 4.2115 5.3253 -3.2024 49 1 4.7119 4.5615 -4.7318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132393202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:40 Heat of formation + Delta-G solvation = -112.791689 kcal Electronic energy + Delta-G solvation = -30587.688467 eV Core-core repulsion = 26483.561529 eV Total energy + Delta-G solvation = -4104.126938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.93144 -39.29963 -38.26686 -37.09102 -36.78241 -35.87278 -34.65321 -34.06305 -32.39095 -31.75646 -29.64968 -27.70368 -26.86264 -25.97204 -24.76256 -23.99402 -22.39113 -21.50773 -20.94589 -19.86884 -18.82462 -18.37396 -18.29198 -17.61038 -17.30602 -17.17194 -16.62182 -16.01133 -15.72698 -15.68719 -15.39402 -15.12243 -15.05679 -14.93758 -14.54432 -14.18213 -14.13215 -13.97790 -13.87990 -13.49364 -13.44957 -13.32496 -13.22024 -13.07387 -12.80951 -12.71587 -12.61026 -12.56349 -12.48342 -12.42888 -12.30624 -12.15675 -11.98809 -11.67101 -11.57296 -11.40892 -11.14635 -11.08490 -10.55151 -10.04265 -9.91018 -8.62781 -7.87256 -5.33743 -0.83726 1.33664 1.40488 1.46618 1.57217 1.75629 2.32612 2.48270 2.97226 3.08496 3.29496 3.55434 3.65856 3.76001 3.88238 3.94329 4.06189 4.11568 4.26321 4.29523 4.36266 4.39959 4.45787 4.62280 4.64304 4.68622 4.71961 4.78583 4.81961 4.91042 4.91706 5.01014 5.04233 5.08003 5.08916 5.19889 5.32916 5.35822 5.46354 5.54380 5.55825 5.61631 5.68900 5.83926 6.39403 6.73727 7.14260 7.46887 7.89913 8.38179 9.16959 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.003680 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.489098 B = 7607.693763 C = 9095.476717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.586 4.586 3 S 2.576 3.424 4 O -1.001 7.001 5 O -1.001 7.001 6 N -0.987 5.987 7 C 0.090 3.910 8 C 0.110 3.890 9 C 0.475 3.525 10 O -0.588 6.588 11 N -0.709 5.709 12 C 0.131 3.869 13 H 0.044 0.956 14 C -0.104 4.104 15 C -0.118 4.118 16 C 0.152 3.848 17 H 0.022 0.978 18 C -0.129 4.129 19 N -0.604 5.604 20 C -0.251 4.251 21 H 0.075 0.925 22 C -0.055 4.055 23 N -0.931 5.931 24 Si 0.951 3.049 25 H -0.271 1.271 26 H -0.306 1.306 27 H -0.270 1.270 28 C 0.179 3.821 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.022 0.978 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.170 0.830 39 H 0.417 0.583 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.242 0.758 48 H 0.032 0.968 49 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 -23.679 5.804 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.721 4.721 3 S 2.675 3.325 4 O -0.992 6.992 5 O -0.991 6.991 6 N -0.824 5.824 7 C -0.054 4.054 8 C -0.019 4.019 9 C 0.261 3.739 10 O -0.467 6.467 11 N -0.362 5.362 12 C 0.024 3.976 13 H 0.063 0.937 14 C -0.142 4.142 15 C -0.158 4.158 16 C 0.047 3.953 17 H 0.040 0.960 18 C -0.187 4.187 19 N -0.329 5.329 20 C -0.382 4.382 21 H 0.092 0.908 22 C -0.250 4.250 23 N -0.578 5.578 24 Si 0.779 3.221 25 H -0.198 1.198 26 H -0.233 1.233 27 H -0.195 1.195 28 C 0.052 3.948 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.041 0.959 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.149 0.851 38 H 0.188 0.812 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.050 0.950 49 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 6.860 -22.154 6.345 24.044 hybrid contribution -1.109 0.624 0.186 1.286 sum 5.751 -21.530 6.531 23.222 Atomic orbital electron populations 1.21745 0.90562 1.06889 1.03236 1.30217 1.06841 1.19864 1.15128 1.05989 0.73608 0.80122 0.72749 1.93510 1.83735 1.75267 1.46661 1.93611 1.83626 1.75176 1.46696 1.56981 1.24046 1.89558 1.11771 1.21672 0.99079 1.01621 0.83030 1.21495 1.01536 0.92475 0.86370 1.22334 0.77300 0.93392 0.80880 1.90728 1.57090 1.45462 1.53416 1.45862 1.56079 1.10520 1.23719 1.21422 0.95713 0.83100 0.97341 0.93720 1.21631 0.95418 0.98140 0.98982 1.21951 0.98271 0.95099 1.00443 1.20831 0.86282 0.95913 0.92230 0.95984 1.21736 1.00308 0.95791 1.00850 1.44330 1.27534 1.02324 1.58676 1.19445 0.89029 0.89277 1.40415 0.90762 1.25820 0.97504 0.99806 1.01873 1.70152 1.04497 1.33288 1.49820 0.85514 0.77727 0.79976 0.78845 1.19751 1.23303 1.19530 1.20742 0.94121 0.85470 0.94441 0.91439 0.91817 0.86476 0.81414 0.81326 0.95897 0.89033 0.86851 0.85131 0.81228 0.74589 0.90655 0.89139 0.88363 0.93211 0.93727 0.90070 0.94462 0.94895 0.94964 0.98537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.92 71.98 0.71 -1.49 16 2 C -0.59 -6.81 6.90 71.98 0.50 -6.32 16 3 S 2.58 72.02 5.32 -56.49 -0.30 71.72 16 4 O -1.00 -36.26 17.09 -127.65 -2.18 -38.44 16 5 O -1.00 -40.00 16.98 -127.65 -2.17 -42.17 16 6 N -0.99 -22.83 2.61 -543.23 -1.42 -24.24 16 7 C 0.09 1.69 10.23 127.77 1.31 2.99 16 8 C 0.11 2.22 5.76 85.64 0.49 2.71 16 9 C 0.48 16.78 7.86 87.66 0.69 17.47 16 10 O -0.59 -29.13 16.09 -3.02 -0.05 -29.18 16 11 N -0.71 -22.37 5.08 -442.11 -2.25 -24.61 16 12 C 0.13 5.28 2.61 45.08 0.12 5.40 16 13 H 0.04 2.13 7.58 -2.38 -0.02 2.11 16 14 C -0.10 -3.04 5.36 30.63 0.16 -2.88 16 15 C -0.12 -3.75 5.37 30.67 0.16 -3.58 16 16 C 0.15 6.29 3.50 44.97 0.16 6.44 16 17 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 18 C -0.13 -4.84 7.95 71.98 0.57 -4.27 16 19 N -0.60 -32.35 2.99 -675.24 -2.02 -34.36 16 20 C -0.25 -14.94 8.57 84.03 0.72 -14.22 16 21 H 0.07 4.24 6.24 -2.91 -0.02 4.22 16 22 C -0.05 -3.44 4.94 84.86 0.42 -3.02 16 23 N -0.93 -62.45 11.23 21.65 0.24 -62.21 16 24 Si 0.95 51.12 29.58 68.60 2.03 53.14 16 25 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.31 -17.13 7.11 99.48 0.71 -16.42 16 27 H -0.27 -13.96 7.11 99.48 0.71 -13.25 16 28 C 0.18 9.59 4.85 86.36 0.42 10.01 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.17 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 1.26 7.79 -2.39 -0.02 1.24 16 36 H 0.11 1.09 7.94 -2.39 -0.02 1.07 16 37 H 0.13 2.07 7.61 -2.39 -0.02 2.05 16 38 H 0.17 1.26 7.96 -2.39 -0.02 1.24 16 39 H 0.42 8.64 8.61 -92.70 -0.80 7.84 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.04 1.72 7.44 -2.38 -0.02 1.70 16 45 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.04 1.54 7.62 -2.39 -0.02 1.53 16 47 H 0.24 16.11 8.31 -92.71 -0.77 15.34 16 48 H 0.03 2.11 6.15 -2.39 -0.01 2.10 16 49 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -105.86 401.20 -1.54 -107.40 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.14 Total: 13.72 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 6.43 Total: 9.24 kcal Atomic # 7 Polarization: -139.99 SS G_CDS: -5.44 Total: -145.43 kcal Atomic # 8 Polarization: -105.39 SS G_CDS: -4.40 Total: -109.79 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.03 Total: 53.14 kcal Atomic # 16 Polarization: 72.02 SS G_CDS: -0.30 Total: 71.72 kcal Total: -105.86 -1.54 -107.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132393202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.393 kcal (2) G-P(sol) polarization free energy of solvation -105.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds