Wall clock time and date at job start Wed Apr 1 2020 04:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47371 * 2 1 4 4 C 1.46504 * 120.00296 * 275.00380 * 3 2 1 5 5 C 1.53000 * 109.46559 * 274.99987 * 4 3 2 6 6 S 1.65601 * 120.00054 * 94.99910 * 3 2 1 7 7 O 1.42103 * 104.27852 * 333.93119 * 6 3 2 8 8 O 1.42094 * 104.28084 * 206.07097 * 6 3 2 9 9 C 1.81404 * 104.44928 * 90.00091 * 6 3 2 10 10 C 1.50698 * 109.47294 * 179.97438 * 9 6 3 11 11 O 1.21279 * 119.99669 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00191 * 179.97438 * 10 9 6 13 13 C 1.46497 * 120.00030 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.88676 * 37.42987 * 13 12 10 15 15 C 1.54913 * 111.00373 * 273.54696 * 13 12 10 16 16 N 1.47422 * 104.83247 * 204.87955 * 15 13 12 17 17 C 1.36932 * 125.64904 * 204.08989 * 16 15 13 18 18 H 1.08001 * 120.00172 * 168.15896 * 17 16 15 19 19 C 1.38810 * 119.99990 * 348.16681 * 17 16 15 20 20 N 1.31624 * 119.99867 * 326.24876 * 19 17 16 21 21 Si 1.86800 * 120.00129 * 145.98140 * 19 17 16 22 22 H 1.48506 * 109.47282 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47535 * 119.99869 * 21 19 17 24 24 H 1.48503 * 109.47098 * 239.99494 * 21 19 17 25 25 C 1.47024 * 108.70201 * 24.35686 * 16 15 13 26 26 C 1.54334 * 107.26646 * 358.58505 * 25 16 15 27 27 H 1.09004 * 110.66854 * 96.52150 * 26 25 16 28 28 C 1.52995 * 110.85086 * 219.67074 * 26 25 16 29 29 H 1.09000 * 109.47023 * 59.99548 * 1 2 3 30 30 H 1.08991 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46735 * 300.00241 * 1 2 3 32 32 H 1.09004 * 109.47000 * 240.00089 * 2 1 3 33 33 H 1.09000 * 109.47023 * 120.00451 * 2 1 3 34 34 H 1.09002 * 109.46635 * 34.99422 * 4 3 2 35 35 H 1.08997 * 109.47051 * 154.99753 * 4 3 2 36 36 H 1.08997 * 109.47630 * 60.00121 * 5 4 3 37 37 H 1.09005 * 109.46433 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47186 * 299.99097 * 5 4 3 39 39 H 1.08998 * 109.46719 * 59.99714 * 9 6 3 40 40 H 1.08997 * 109.47071 * 300.00667 * 9 6 3 41 41 H 0.97006 * 119.99702 * 0.02562 * 12 10 9 42 42 H 1.08998 * 110.36702 * 86.04149 * 15 13 12 43 43 H 1.08997 * 110.45893 * 323.76573 * 15 13 12 44 44 H 0.96994 * 119.99575 * 353.97716 * 20 19 17 45 45 H 1.09007 * 109.88319 * 118.13184 * 25 16 15 46 46 H 1.09002 * 109.88170 * 239.29426 * 25 16 15 47 47 H 1.09000 * 109.47522 * 173.69225 * 28 26 25 48 48 H 1.09001 * 109.47262 * 293.69322 * 28 26 25 49 49 H 1.09001 * 109.47218 * 53.69162 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5152 1.7839 -1.8917 6 16 2.4123 2.1202 1.4287 7 8 1.6209 1.4496 2.4000 8 8 2.2336 3.5054 1.1677 9 6 4.1698 1.7388 1.6661 10 6 4.6510 2.3654 2.9494 11 8 3.8836 3.0058 3.6364 12 7 5.9337 2.2133 3.3341 13 6 6.4012 2.8220 4.5820 14 1 5.6321 2.7685 5.3524 15 6 6.8545 4.2851 4.3503 16 7 7.8182 4.5574 5.4322 17 6 8.1329 5.7944 5.9280 18 1 8.7017 5.8812 6.8419 19 6 7.7206 6.9369 5.2560 20 7 7.6489 6.9376 3.9417 21 14 7.2605 8.4711 6.2172 22 1 7.4190 8.2107 7.6707 23 1 8.1477 9.5919 5.8151 24 1 5.8484 8.8301 5.9302 25 6 8.3902 3.2814 5.8862 26 6 7.7190 2.1604 5.0648 27 1 8.3427 1.8790 4.2162 28 6 7.4234 0.9435 5.9438 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.3618 1.8097 -1.9452 35 1 2.0923 3.1803 -1.0755 36 1 3.5813 0.7123 -2.0801 37 1 3.6191 2.3249 -2.8323 38 1 4.3118 2.0829 -1.2104 39 1 4.7442 2.1373 0.8299 40 1 4.3035 0.6582 1.7164 41 1 6.5473 1.7008 2.7848 42 1 6.0030 4.9618 4.4216 43 1 7.3372 4.3850 3.3782 44 1 7.9663 6.1716 3.4384 45 1 9.4667 3.2757 5.7145 46 1 8.1810 3.1377 6.9463 47 1 6.8514 0.2126 5.3721 48 1 8.3615 0.4952 6.2711 49 1 6.8467 1.2557 6.8144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209054671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:42 Heat of formation + Delta-G solvation = -83.798806 kcal Electronic energy + Delta-G solvation = -30036.757370 eV Core-core repulsion = 25933.887658 eV Total energy + Delta-G solvation = -4102.869712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -39.95968 -37.89293 -37.52523 -37.26783 -35.95102 -34.30735 -32.97891 -32.32156 -30.72931 -30.42186 -29.14718 -27.65514 -25.55665 -24.10555 -23.71741 -22.54271 -21.16134 -20.36235 -19.82865 -18.90609 -18.12241 -17.60280 -17.07524 -16.82948 -16.66701 -15.94280 -15.55936 -14.89624 -14.53468 -14.46507 -14.21842 -14.13067 -13.79069 -13.69382 -13.43681 -13.30764 -13.15590 -13.07153 -12.72494 -12.53638 -12.47313 -12.16339 -12.11775 -12.09004 -11.97977 -11.86066 -11.60476 -11.34656 -11.26101 -11.03700 -10.95572 -10.76761 -10.64740 -10.44209 -10.18391 -10.13616 -9.97978 -9.66247 -9.47579 -8.88662 -8.30998 -6.97208 -6.13602 -3.07664 -0.03170 2.41255 2.43211 3.00652 3.56882 3.63143 3.74386 3.74786 3.93808 4.18204 4.41244 4.55541 4.62468 4.70790 4.77335 4.80823 4.87261 4.98184 4.98885 5.04839 5.13369 5.18028 5.20169 5.29556 5.38374 5.49169 5.57977 5.60178 5.72874 5.77348 5.78823 5.84428 5.90984 5.96530 5.99286 6.14400 6.24791 6.25589 6.41726 6.55214 6.73045 6.90882 7.03654 7.40315 7.79382 8.05755 8.49472 9.00481 9.82770 10.36090 11.20790 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002953 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.971727 B = 9478.640958 C =10436.572207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 N -1.002 6.002 4 C 0.105 3.895 5 C -0.178 4.178 6 S 2.639 3.361 7 O -0.936 6.936 8 O -0.932 6.932 9 C -0.677 4.677 10 C 0.540 3.460 11 O -0.530 6.530 12 N -0.701 5.701 13 C 0.125 3.875 14 H 0.099 0.901 15 C 0.139 3.861 16 N -0.600 5.600 17 C -0.347 4.347 18 H 0.069 0.931 19 C -0.020 4.020 20 N -0.905 5.905 21 Si 1.060 2.940 22 H -0.291 1.291 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.142 3.858 26 C -0.109 4.109 27 H 0.076 0.924 28 C -0.139 4.139 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.400 0.600 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.267 0.733 45 H 0.026 0.974 46 H 0.032 0.968 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 -20.134 -12.991 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.006 4.006 3 N -0.841 5.841 4 C -0.020 4.020 5 C -0.237 4.237 6 S 2.727 3.273 7 O -0.926 6.926 8 O -0.922 6.922 9 C -0.804 4.804 10 C 0.323 3.677 11 O -0.407 6.407 12 N -0.350 5.350 13 C 0.020 3.980 14 H 0.117 0.883 15 C 0.012 3.988 16 N -0.328 5.328 17 C -0.474 4.474 18 H 0.087 0.913 19 C -0.222 4.222 20 N -0.545 5.545 21 Si 0.890 3.110 22 H -0.217 1.217 23 H -0.223 1.223 24 H -0.214 1.214 25 C 0.016 3.984 26 C -0.129 4.129 27 H 0.094 0.906 28 C -0.196 4.196 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.235 0.765 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.716 -17.546 -12.019 23.382 hybrid contribution 1.861 -2.244 -0.572 2.971 sum -7.855 -19.790 -12.592 24.736 Atomic orbital electron populations 1.22207 0.95604 1.02446 1.03049 1.21242 0.95167 0.81205 1.02954 1.57894 1.79325 1.24123 1.22719 1.21432 0.97946 0.97805 0.84814 1.22310 0.97311 1.02448 1.01655 1.04477 0.75818 0.74271 0.72705 1.93581 1.63958 1.75907 1.59163 1.93597 1.84058 1.30877 1.83683 1.31249 1.30994 1.12404 1.05739 1.19083 0.83433 0.80336 0.84838 1.90889 1.54385 1.40612 1.54792 1.45763 1.10059 1.54072 1.25155 1.22565 0.95787 0.94869 0.84810 0.88258 1.21798 0.93488 0.91543 0.91979 1.44455 1.44673 1.01669 1.41958 1.19688 1.38697 0.82220 1.06787 0.91306 1.25693 1.00031 1.00269 0.96236 1.70749 1.46342 1.31533 1.05833 0.83639 0.77192 0.75441 0.74758 1.21740 1.22252 1.21436 1.21365 0.95583 0.85267 0.96197 1.22434 0.95728 0.95783 0.98938 0.90559 1.21756 1.01346 0.96810 0.99719 0.92295 0.91470 0.91437 0.90346 0.90131 0.89746 0.88429 0.91991 0.90895 0.92649 0.82389 0.82581 0.76531 0.92186 0.95659 0.92182 0.95629 0.95051 0.92989 0.92489 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.12 0.79 5.98 -4.04 -0.02 0.76 16 3 N -1.00 -8.70 2.71 -114.37 -0.31 -9.01 16 4 C 0.11 0.76 6.38 -4.04 -0.03 0.73 16 5 C -0.18 -0.98 10.24 37.16 0.38 -0.60 16 6 S 2.64 35.16 4.51 -107.50 -0.48 34.68 16 7 O -0.94 -15.01 16.75 -57.55 -0.96 -15.97 16 8 O -0.93 -16.23 16.53 -57.55 -0.95 -17.19 16 9 C -0.68 -7.08 6.66 36.00 0.24 -6.84 16 10 C 0.54 8.73 7.85 -10.99 -0.09 8.64 16 11 O -0.53 -11.26 15.61 5.56 0.09 -11.18 16 12 N -0.70 -10.35 5.23 -51.73 -0.27 -10.62 16 13 C 0.12 2.31 2.77 -65.78 -0.18 2.13 16 14 H 0.10 2.01 7.63 -51.93 -0.40 1.61 16 15 C 0.14 3.36 5.03 -2.53 -0.01 3.35 16 16 N -0.60 -15.53 3.33 -170.06 -0.57 -16.09 16 17 C -0.35 -10.06 9.97 -15.06 -0.15 -10.21 16 18 H 0.07 1.98 8.02 -52.49 -0.42 1.56 16 19 C -0.02 -0.58 4.96 -17.43 -0.09 -0.67 16 20 N -0.91 -28.13 12.86 55.49 0.71 -27.41 16 21 Si 1.06 26.50 30.03 -169.99 -5.10 21.40 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.14 2.91 6.85 -3.06 -0.02 2.89 16 26 C -0.11 -1.74 3.16 -88.78 -0.28 -2.02 16 27 H 0.08 1.08 8.00 -51.93 -0.42 0.67 16 28 C -0.14 -1.77 9.16 37.16 0.34 -1.43 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 32 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 33 H 0.08 0.49 7.61 -51.93 -0.40 0.09 16 34 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 35 H 0.10 0.86 6.82 -51.93 -0.35 0.51 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.31 6.96 -51.93 -0.36 -0.05 16 39 H 0.16 1.20 6.96 -51.92 -0.36 0.84 16 40 H 0.16 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.40 4.28 8.52 -40.82 -0.35 3.93 16 42 H 0.06 1.70 7.81 -51.93 -0.41 1.30 16 43 H 0.03 0.64 7.02 -51.93 -0.36 0.28 16 44 H 0.27 8.28 6.43 -40.82 -0.26 8.02 16 45 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.03 0.64 7.77 -51.93 -0.40 0.23 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 404.97 15.07 6.10 6.10 Total: -1.00 -39.80 404.97 -9.61 -49.41 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.34 Total: 0.00 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 0.47 Total: -4.13 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.43 Total: -63.13 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.83 Total: -44.33 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.10 Total: 21.40 kcal Atomic # 16 Polarization: 35.16 SS G_CDS: -0.48 Total: 34.68 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.80 -9.61 -49.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209054671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.390 kcal (2) G-P(sol) polarization free energy of solvation -39.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds