Wall clock time and date at job start Wed Apr 1 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47371 * 2 1 4 4 C 1.46504 * 120.00296 * 275.00380 * 3 2 1 5 5 C 1.53000 * 109.46559 * 274.99987 * 4 3 2 6 6 S 1.65601 * 120.00054 * 94.99910 * 3 2 1 7 7 O 1.42103 * 104.27852 * 333.93119 * 6 3 2 8 8 O 1.42094 * 104.28084 * 206.07097 * 6 3 2 9 9 C 1.81404 * 104.44928 * 90.00091 * 6 3 2 10 10 C 1.50698 * 109.47294 * 179.97438 * 9 6 3 11 11 O 1.21279 * 119.99669 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00191 * 179.97438 * 10 9 6 13 13 C 1.46497 * 120.00030 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.88676 * 37.42987 * 13 12 10 15 15 C 1.54913 * 111.00373 * 273.54696 * 13 12 10 16 16 N 1.47422 * 104.83247 * 204.87955 * 15 13 12 17 17 C 1.36932 * 125.64904 * 204.08989 * 16 15 13 18 18 H 1.08001 * 120.00172 * 168.15896 * 17 16 15 19 19 C 1.38810 * 119.99990 * 348.16681 * 17 16 15 20 20 N 1.31624 * 119.99867 * 326.24876 * 19 17 16 21 21 Si 1.86800 * 120.00129 * 145.98140 * 19 17 16 22 22 H 1.48506 * 109.47282 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47535 * 119.99869 * 21 19 17 24 24 H 1.48503 * 109.47098 * 239.99494 * 21 19 17 25 25 C 1.47024 * 108.70201 * 24.35686 * 16 15 13 26 26 C 1.54334 * 107.26646 * 358.58505 * 25 16 15 27 27 H 1.09004 * 110.66854 * 96.52150 * 26 25 16 28 28 C 1.52995 * 110.85086 * 219.67074 * 26 25 16 29 29 H 1.09000 * 109.47023 * 59.99548 * 1 2 3 30 30 H 1.08991 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46735 * 300.00241 * 1 2 3 32 32 H 1.09004 * 109.47000 * 240.00089 * 2 1 3 33 33 H 1.09000 * 109.47023 * 120.00451 * 2 1 3 34 34 H 1.09002 * 109.46635 * 34.99422 * 4 3 2 35 35 H 1.08997 * 109.47051 * 154.99753 * 4 3 2 36 36 H 1.08997 * 109.47630 * 60.00121 * 5 4 3 37 37 H 1.09005 * 109.46433 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47186 * 299.99097 * 5 4 3 39 39 H 1.08998 * 109.46719 * 59.99714 * 9 6 3 40 40 H 1.08997 * 109.47071 * 300.00667 * 9 6 3 41 41 H 0.97006 * 119.99702 * 0.02562 * 12 10 9 42 42 H 1.08998 * 110.36702 * 86.04149 * 15 13 12 43 43 H 1.08997 * 110.45893 * 323.76573 * 15 13 12 44 44 H 0.96994 * 119.99575 * 353.97716 * 20 19 17 45 45 H 1.09007 * 109.88319 * 118.13184 * 25 16 15 46 46 H 1.09002 * 109.88170 * 239.29426 * 25 16 15 47 47 H 1.09000 * 109.47522 * 173.69225 * 28 26 25 48 48 H 1.09001 * 109.47262 * 293.69322 * 28 26 25 49 49 H 1.09001 * 109.47218 * 53.69162 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5152 1.7839 -1.8917 6 16 2.4123 2.1202 1.4287 7 8 1.6209 1.4496 2.4000 8 8 2.2336 3.5054 1.1677 9 6 4.1698 1.7388 1.6661 10 6 4.6510 2.3654 2.9494 11 8 3.8836 3.0058 3.6364 12 7 5.9337 2.2133 3.3341 13 6 6.4012 2.8220 4.5820 14 1 5.6321 2.7685 5.3524 15 6 6.8545 4.2851 4.3503 16 7 7.8182 4.5574 5.4322 17 6 8.1329 5.7944 5.9280 18 1 8.7017 5.8812 6.8419 19 6 7.7206 6.9369 5.2560 20 7 7.6489 6.9376 3.9417 21 14 7.2605 8.4711 6.2172 22 1 7.4190 8.2107 7.6707 23 1 8.1477 9.5919 5.8151 24 1 5.8484 8.8301 5.9302 25 6 8.3902 3.2814 5.8862 26 6 7.7190 2.1604 5.0648 27 1 8.3427 1.8790 4.2162 28 6 7.4234 0.9435 5.9438 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.3618 1.8097 -1.9452 35 1 2.0923 3.1803 -1.0755 36 1 3.5813 0.7123 -2.0801 37 1 3.6191 2.3249 -2.8323 38 1 4.3118 2.0829 -1.2104 39 1 4.7442 2.1373 0.8299 40 1 4.3035 0.6582 1.7164 41 1 6.5473 1.7008 2.7848 42 1 6.0030 4.9618 4.4216 43 1 7.3372 4.3850 3.3782 44 1 7.9663 6.1716 3.4384 45 1 9.4667 3.2757 5.7145 46 1 8.1810 3.1377 6.9463 47 1 6.8514 0.2126 5.3721 48 1 8.3615 0.4952 6.2711 49 1 6.8467 1.2557 6.8144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209054671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:41 Heat of formation + Delta-G solvation = -116.216655 kcal Electronic energy + Delta-G solvation = -30038.163113 eV Core-core repulsion = 25933.887658 eV Total energy + Delta-G solvation = -4104.275456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36334 -39.50583 -38.39367 -38.14883 -37.07512 -36.02364 -34.63881 -32.83363 -32.24779 -31.82371 -29.72143 -29.33371 -27.25097 -25.47198 -24.59292 -23.28487 -22.71433 -21.88567 -21.31383 -19.83465 -19.64417 -19.07005 -18.24599 -17.98258 -17.63477 -17.15758 -16.63216 -16.44637 -15.91981 -15.74034 -15.57831 -15.25104 -14.96829 -14.78943 -14.59527 -14.54945 -14.31155 -14.15716 -13.91922 -13.72459 -13.46908 -13.28048 -13.22865 -13.08047 -12.98626 -12.74122 -12.67163 -12.61927 -12.56665 -12.32701 -12.23532 -12.14194 -11.91855 -11.84789 -11.74110 -11.65926 -11.64597 -11.48885 -10.51318 -10.36925 -10.11369 -9.10697 -8.45469 -5.34632 -1.01730 1.16576 1.50490 1.51885 1.60807 1.76341 1.86694 2.57537 2.76767 3.01804 3.07162 3.20036 3.42262 3.56387 3.73283 3.76739 3.83072 3.90091 4.07813 4.23250 4.24471 4.28719 4.40828 4.47115 4.48155 4.50895 4.57872 4.70433 4.76014 4.87764 4.88006 4.89546 4.93462 5.00204 5.05207 5.09990 5.13236 5.26545 5.32668 5.36385 5.41240 5.44122 5.62232 5.67947 6.15065 6.23383 6.80212 6.89768 7.63391 8.21140 8.89479 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002953 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.971727 B = 9478.640958 C =10436.572207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 N -0.989 5.989 4 C 0.098 3.902 5 C -0.178 4.178 6 S 2.631 3.369 7 O -0.976 6.976 8 O -0.990 6.990 9 C -0.655 4.655 10 C 0.528 3.472 11 O -0.590 6.590 12 N -0.683 5.683 13 C 0.139 3.861 14 H 0.079 0.921 15 C 0.146 3.854 16 N -0.625 5.625 17 C -0.353 4.353 18 H 0.066 0.934 19 C -0.076 4.076 20 N -0.935 5.935 21 Si 1.108 2.892 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.296 1.296 25 C 0.132 3.868 26 C -0.088 4.088 27 H 0.106 0.894 28 C -0.132 4.132 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.194 0.806 40 H 0.213 0.787 41 H 0.425 0.575 42 H 0.001 0.999 43 H 0.013 0.987 44 H 0.255 0.745 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -23.847 -14.386 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.013 4.013 3 N -0.830 5.830 4 C -0.026 4.026 5 C -0.237 4.237 6 S 2.723 3.277 7 O -0.965 6.965 8 O -0.980 6.980 9 C -0.785 4.785 10 C 0.313 3.687 11 O -0.471 6.471 12 N -0.335 5.335 13 C 0.033 3.967 14 H 0.097 0.903 15 C 0.019 3.981 16 N -0.352 5.352 17 C -0.482 4.482 18 H 0.084 0.916 19 C -0.273 4.273 20 N -0.577 5.577 21 Si 0.933 3.067 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.223 1.223 25 C 0.007 3.993 26 C -0.107 4.107 27 H 0.124 0.876 28 C -0.189 4.189 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.212 0.788 40 H 0.230 0.770 41 H 0.265 0.735 42 H 0.019 0.981 43 H 0.031 0.969 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.365 -21.315 -13.427 26.544 hybrid contribution 1.459 -1.155 -0.169 1.869 sum -6.906 -22.470 -13.596 27.156 Atomic orbital electron populations 1.22265 0.96502 1.03369 1.01677 1.21593 0.94564 0.79897 1.05256 1.57536 1.79097 1.24982 1.21337 1.21620 1.00252 0.96449 0.84302 1.22330 0.95623 1.04036 1.01678 1.04178 0.76977 0.73232 0.73273 1.93526 1.65863 1.76035 1.61116 1.93529 1.85462 1.34445 1.84579 1.31107 1.28233 1.15684 1.03434 1.20008 0.83171 0.79480 0.86020 1.90880 1.56001 1.43173 1.57088 1.45518 1.10284 1.53447 1.24219 1.22106 0.96701 0.91849 0.86055 0.90306 1.21630 0.91078 0.94291 0.91120 1.44713 1.45639 1.02637 1.42223 1.19961 1.37839 0.83948 1.06408 0.91573 1.27027 1.00280 1.03548 0.96466 1.70859 1.48719 1.31354 1.06747 0.82994 0.76367 0.72636 0.74713 1.19395 1.21001 1.22292 1.21640 0.96010 0.84507 0.97110 1.22387 0.93448 0.95190 0.99713 0.87636 1.21734 1.02856 0.95483 0.98865 0.91697 0.89425 0.94813 0.86307 0.89377 0.87543 0.90980 0.89759 0.90171 0.92808 0.78830 0.76954 0.73537 0.98052 0.96924 0.93556 0.95207 0.94761 0.90415 0.90061 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 10.24 71.98 0.74 -1.56 16 2 C 0.11 1.12 5.98 86.38 0.52 1.64 16 3 N -0.99 -15.42 2.71 -515.77 -1.40 -16.82 16 4 C 0.10 1.24 6.38 86.38 0.55 1.80 16 5 C -0.18 -1.36 10.24 71.98 0.74 -0.62 16 6 S 2.63 70.31 4.51 -56.49 -0.25 70.05 16 7 O -0.98 -32.22 16.75 -127.64 -2.14 -34.36 16 8 O -0.99 -36.73 16.53 -127.64 -2.11 -38.84 16 9 C -0.66 -11.91 6.66 71.24 0.47 -11.44 16 10 C 0.53 16.65 7.85 87.66 0.69 17.34 16 11 O -0.59 -26.25 15.61 -3.03 -0.05 -26.30 16 12 N -0.68 -18.87 5.23 -435.97 -2.28 -21.15 16 13 C 0.14 5.13 2.77 46.38 0.13 5.25 16 14 H 0.08 3.26 7.63 -2.39 -0.02 3.25 16 15 C 0.15 7.37 5.03 86.86 0.44 7.80 16 16 N -0.62 -33.13 3.33 -691.96 -2.30 -35.44 16 17 C -0.35 -21.05 9.97 84.03 0.84 -20.21 16 18 H 0.07 3.88 8.02 -2.91 -0.02 3.85 16 19 C -0.08 -4.66 4.96 84.86 0.42 -4.24 16 20 N -0.94 -60.58 12.86 21.65 0.28 -60.30 16 21 Si 1.11 55.01 30.03 68.60 2.06 57.07 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 25 C 0.13 5.30 6.85 86.73 0.59 5.90 16 26 C -0.09 -2.57 3.16 -9.60 -0.03 -2.60 16 27 H 0.11 2.52 8.00 -2.38 -0.02 2.50 16 28 C -0.13 -2.84 9.16 71.98 0.66 -2.18 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.03 0.66 7.90 -2.39 -0.02 0.64 16 32 H 0.12 0.32 8.11 -2.38 -0.02 0.30 16 33 H 0.09 0.79 7.61 -2.39 -0.02 0.77 16 34 H 0.11 0.88 8.11 -2.39 -0.02 0.86 16 35 H 0.07 1.30 6.82 -2.39 -0.02 1.29 16 36 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.05 0.43 6.96 -2.39 -0.02 0.41 16 39 H 0.19 2.18 6.96 -2.39 -0.02 2.17 16 40 H 0.21 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.43 7.34 8.52 -92.70 -0.79 6.55 16 42 H 0.00 0.06 7.81 -2.39 -0.02 0.04 16 43 H 0.01 0.68 7.02 -2.39 -0.02 0.66 16 44 H 0.25 16.56 6.43 -92.71 -0.60 15.97 16 45 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.03 1.36 7.77 -2.39 -0.02 1.34 16 47 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 Total: -1.00 -97.43 404.97 -1.12 -98.55 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.32 Total: 10.66 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.75 Total: -3.13 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -5.70 Total: -133.71 kcal Atomic # 8 Polarization: -95.20 SS G_CDS: -4.29 Total: -99.49 kcal Atomic # 14 Polarization: 55.01 SS G_CDS: 2.06 Total: 57.07 kcal Atomic # 16 Polarization: 70.31 SS G_CDS: -0.25 Total: 70.05 kcal Total: -97.43 -1.12 -98.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209054671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.664 kcal (2) G-P(sol) polarization free energy of solvation -97.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds