Wall clock time and date at job start Wed Apr 1 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99810 * 2 1 4 4 S 1.65595 * 120.00023 * 180.02562 * 2 1 3 5 5 O 1.42101 * 104.27841 * 333.92655 * 4 2 1 6 6 O 1.42101 * 104.27622 * 206.07101 * 4 2 1 7 7 C 1.81402 * 104.44871 * 90.00082 * 4 2 1 8 8 C 1.53006 * 109.46785 * 179.97438 * 7 4 2 9 9 C 1.50702 * 109.46847 * 179.97438 * 8 7 4 10 10 O 1.21282 * 119.99970 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00101 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47280 * 179.97438 * 12 11 9 14 14 C 1.53349 * 109.42091 * 295.12817 * 13 12 11 15 15 C 1.53196 * 109.15353 * 178.67328 * 14 13 12 16 16 N 1.46928 * 108.89135 * 54.57497 * 15 14 13 17 17 C 1.36936 * 120.63013 * 126.29699 * 16 15 14 18 18 H 1.07999 * 120.00022 * 331.83633 * 17 16 15 19 19 C 1.38813 * 120.00005 * 151.82709 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.09585 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.09475 * 19 17 16 22 22 H 1.48494 * 109.47083 * 60.00061 * 21 19 17 23 23 H 1.48500 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47024 * 300.00112 * 21 19 17 25 25 C 1.46924 * 118.73859 * 306.32337 * 16 15 14 26 26 C 1.53044 * 109.46279 * 174.99967 * 13 12 11 27 27 H 1.09001 * 109.47253 * 269.99685 * 1 2 3 28 28 H 1.09003 * 109.47264 * 30.00051 * 1 2 3 29 29 H 1.09002 * 109.46988 * 149.99741 * 1 2 3 30 30 H 1.08994 * 109.47425 * 239.99943 * 3 2 1 31 31 H 1.09003 * 109.47149 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.47135 * 119.99715 * 3 2 1 33 33 H 1.09000 * 109.47019 * 60.00340 * 7 4 2 34 34 H 1.08997 * 109.47031 * 299.99580 * 7 4 2 35 35 H 1.09000 * 109.46810 * 60.00523 * 8 7 4 36 36 H 1.08997 * 109.47247 * 299.99759 * 8 7 4 37 37 H 0.96999 * 119.99862 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.47191 * 59.99822 * 12 11 9 39 39 H 1.08998 * 109.47122 * 300.00127 * 12 11 9 40 40 H 1.09003 * 109.46065 * 55.02896 * 13 12 11 41 41 H 1.08998 * 109.68701 * 58.70817 * 14 13 12 42 42 H 1.09000 * 109.47234 * 298.50885 * 14 13 12 43 43 H 1.08996 * 109.58345 * 294.72319 * 15 14 13 44 44 H 1.08994 * 109.58644 * 174.43734 * 15 14 13 45 45 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58664 * 173.39523 * 25 16 15 47 47 H 1.08996 * 109.58580 * 293.67452 * 25 16 15 48 48 H 1.08992 * 109.49619 * 61.43154 * 26 13 12 49 49 H 1.08999 * 109.52313 * 301.35168 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.3970 -2.3564 0.6042 6 8 3.5395 -1.1193 0.6047 7 6 2.5193 -1.8253 -1.7575 8 6 3.2820 -3.1449 -1.8919 9 6 3.4695 -3.4702 -3.3514 10 8 3.0362 -2.7202 -4.2004 11 7 4.1186 -4.5945 -3.7133 12 6 4.3013 -4.9105 -5.1320 13 6 5.0638 -6.2301 -5.2665 14 6 6.4786 -6.0615 -4.6995 15 6 7.2253 -7.3949 -4.8069 16 7 7.1833 -7.8525 -6.2025 17 6 8.3374 -8.1705 -6.8675 18 1 9.2668 -7.6929 -6.5947 19 6 8.3126 -9.1067 -7.8921 20 7 7.2881 -9.9242 -8.0119 21 14 9.7334 -9.2062 -9.1008 22 1 10.9875 -9.5111 -8.3665 23 1 9.4659 -10.2795 -10.0917 24 1 9.8757 -7.9068 -9.8055 25 6 5.8796 -7.9620 -6.8711 26 6 5.1460 -6.6233 -6.7433 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 2.8241 1.3265 -0.8899 31 1 1.4891 2.0972 0.0005 32 1 2.8241 1.3265 0.8900 33 1 3.0866 -1.0277 -2.2371 34 1 1.5451 -1.9177 -2.2375 35 1 2.7150 -3.9427 -1.4122 36 1 4.2562 -3.0520 -1.4119 37 1 4.4647 -5.1945 -3.0343 38 1 4.8686 -4.1129 -5.6117 39 1 3.3271 -5.0028 -5.6121 40 1 4.5415 -7.0095 -4.7118 41 1 6.4215 -5.7599 -3.6536 42 1 7.0103 -5.2999 -5.2698 43 1 6.7464 -8.1345 -4.1653 44 1 8.2617 -7.2592 -4.4978 45 1 7.2706 -10.5781 -8.7280 46 1 6.0281 -8.1981 -7.9248 47 1 5.2921 -8.7496 -6.3994 48 1 5.6900 -5.8562 -7.2943 49 1 4.1397 -6.7195 -7.1512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225535050.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:16 Heat of formation + Delta-G solvation = -92.758334 kcal Electronic energy + Delta-G solvation = -28471.567549 eV Core-core repulsion = 24368.309322 eV Total energy + Delta-G solvation = -4103.258226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -39.96341 -37.89149 -37.57341 -36.71358 -36.28778 -35.08375 -33.60930 -32.83641 -30.82411 -29.77097 -28.59907 -27.34866 -25.56882 -24.91543 -23.68817 -22.25341 -21.10191 -20.55446 -19.34020 -19.15754 -18.29492 -17.39647 -16.91132 -16.77012 -16.43587 -16.04629 -15.89737 -15.01124 -14.92057 -14.80287 -14.44286 -13.98039 -13.84103 -13.65667 -13.56591 -13.42891 -13.18224 -13.10370 -13.00509 -12.74983 -12.49017 -12.38712 -12.37289 -12.16374 -12.03920 -12.00348 -11.82155 -11.37951 -11.29626 -11.00640 -10.73459 -10.54819 -10.30812 -10.25816 -10.14235 -9.91267 -9.59442 -9.57117 -9.46598 -9.10796 -8.48252 -6.68916 -5.80684 -3.23221 -0.24526 2.12539 2.43369 3.00941 3.37294 3.41460 3.43150 3.44468 3.69382 3.90774 4.18279 4.31625 4.48229 4.53335 4.79674 4.88127 4.89904 5.01850 5.05116 5.07375 5.17381 5.27815 5.30588 5.31452 5.33704 5.38961 5.43165 5.56917 5.80508 5.87226 5.94681 5.99223 6.08845 6.28347 6.33780 6.41253 6.56524 6.64522 6.72328 6.77809 6.94684 7.32540 7.38369 7.63378 7.77691 8.04574 8.43747 9.19875 9.83298 10.39921 11.27878 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032840 B = 0.001676 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.402243 B =16699.832482 C =16855.267530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.009 6.009 3 C 0.089 3.911 4 S 2.612 3.388 5 O -0.951 6.951 6 O -0.950 6.950 7 C -0.611 4.611 8 C -0.137 4.137 9 C 0.519 3.481 10 O -0.541 6.541 11 N -0.723 5.723 12 C 0.122 3.878 13 C -0.091 4.091 14 C -0.128 4.128 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.171 3.829 26 C -0.133 4.133 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.403 0.597 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.254 0.746 46 H 0.088 0.912 47 H 0.018 0.982 48 H 0.057 0.943 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 20.051 15.737 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.848 5.848 3 C -0.056 4.056 4 S 2.704 3.296 5 O -0.941 6.941 6 O -0.940 6.940 7 C -0.741 4.741 8 C -0.178 4.178 9 C 0.303 3.697 10 O -0.418 6.418 11 N -0.374 5.374 12 C -0.001 4.001 13 C -0.110 4.110 14 C -0.167 4.167 15 C 0.018 3.982 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.045 3.955 26 C -0.172 4.172 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.238 0.762 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.179 20.000 15.751 29.139 hybrid contribution 0.712 -0.186 -1.125 1.344 sum -13.467 19.813 14.626 28.068 Atomic orbital electron populations 1.21545 0.77999 1.03181 1.02552 1.57369 1.15389 1.21849 1.90188 1.21571 0.96743 0.85002 1.02318 1.05133 0.73940 0.73151 0.77362 1.93612 1.64608 1.62427 1.73433 1.93606 1.44095 1.82888 1.73435 1.30446 1.10775 1.06093 1.26744 1.21373 1.02904 0.96445 0.97119 1.20144 0.78039 0.81245 0.90293 1.90702 1.49508 1.49060 1.52564 1.46099 1.57641 1.23935 1.09717 1.21624 1.00329 0.98012 0.80119 1.21378 0.95906 0.94609 0.99060 1.22142 0.95526 1.00514 0.98545 1.20885 0.97696 0.92016 0.87567 1.44034 1.03231 1.77236 1.06984 1.19137 0.88050 1.17050 1.14054 0.91800 1.25047 0.97696 0.95556 1.01342 1.70016 1.31469 1.20267 1.33009 0.86369 0.82050 0.77201 0.81141 1.20887 1.21630 1.21043 1.20764 0.84695 0.90132 0.99869 1.22173 0.99908 1.01851 0.93307 0.92148 0.90831 0.90928 0.92128 0.90101 0.91238 0.84253 0.84295 0.87232 0.87173 0.76234 0.91504 0.91694 0.91224 0.93395 0.92163 0.96580 0.92872 0.93572 0.89412 0.96399 0.92398 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.17 59.85 0.61 1.03 16 2 N -1.01 -6.12 3.52 -129.20 -0.45 -6.58 16 3 C 0.09 0.41 10.26 59.85 0.61 1.02 16 4 S 2.61 20.66 5.38 -107.50 -0.58 20.08 16 5 O -0.95 -10.13 17.09 -57.54 -0.98 -11.11 16 6 O -0.95 -10.24 17.11 -57.54 -0.98 -11.22 16 7 C -0.61 -4.32 5.47 37.16 0.20 -4.12 16 8 C -0.14 -1.08 5.71 -27.88 -0.16 -1.24 16 9 C 0.52 5.99 7.83 -10.99 -0.09 5.90 16 10 O -0.54 -8.19 15.98 5.56 0.09 -8.10 16 11 N -0.72 -8.01 5.27 -60.30 -0.32 -8.33 16 12 C 0.12 1.64 5.07 -4.05 -0.02 1.62 16 13 C -0.09 -1.36 2.19 -90.42 -0.20 -1.56 16 14 C -0.13 -2.02 5.27 -26.45 -0.14 -2.16 16 15 C 0.14 2.89 6.51 -3.71 -0.02 2.86 16 16 N -0.59 -14.44 2.99 -172.32 -0.52 -14.96 16 17 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 18 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 21 Si 0.90 21.53 29.59 -169.99 -5.03 16.51 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 26 C -0.13 -2.39 5.36 -26.61 -0.14 -2.53 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.18 7.92 -51.93 -0.41 -0.23 16 29 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.21 7.79 -51.93 -0.40 -0.20 16 32 H 0.07 0.36 7.90 -51.93 -0.41 -0.05 16 33 H 0.14 0.92 8.10 -51.92 -0.42 0.50 16 34 H 0.14 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 3.54 7.65 -40.82 -0.31 3.22 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -36.38 403.37 -10.17 -46.55 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.50 Total: -1.33 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.41 Total: -2.28 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.67 Total: -55.17 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.88 Total: -30.43 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: 20.66 SS G_CDS: -0.58 Total: 20.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.38 -10.17 -46.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225535050.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.208 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds