Wall clock time and date at job start Wed Apr 1 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99924 * 2 1 4 4 C 1.46901 * 111.00219 * 123.95404 * 2 1 3 5 5 C 1.52988 * 109.47108 * 169.99838 * 4 2 1 6 6 C 1.50705 * 109.47262 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00446 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00381 * 179.97438 * 8 6 5 10 10 C 1.52991 * 109.47541 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47573 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.64235 * 304.73584 * 11 10 9 13 13 C 1.52708 * 109.62770 * 184.56388 * 11 10 9 14 14 N 1.46388 * 109.77072 * 182.00679 * 13 11 10 15 15 C 1.36931 * 119.69547 * 244.31119 * 14 13 11 16 16 H 1.08000 * 120.00262 * 331.36968 * 15 14 13 17 17 C 1.38813 * 119.99851 * 151.37044 * 15 14 13 18 18 N 1.31618 * 120.00318 * 340.81284 * 17 15 14 19 19 Si 1.86797 * 120.00202 * 160.54459 * 17 15 14 20 20 H 1.48506 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47410 * 119.99543 * 19 17 15 22 22 H 1.48505 * 109.47191 * 240.00036 * 19 17 15 23 23 C 1.46383 * 120.60099 * 64.03412 * 14 13 11 24 24 C 1.53190 * 109.50944 * 295.95833 * 23 14 13 25 25 S 1.81661 * 109.55526 * 64.99933 * 11 10 9 26 26 O 1.42105 * 108.65263 * 61.06051 * 25 11 10 27 27 O 1.42102 * 108.65435 * 289.75417 * 25 11 10 28 28 H 1.09006 * 109.47185 * 296.04780 * 1 2 3 29 29 H 1.09002 * 109.47083 * 56.04117 * 1 2 3 30 30 H 1.09002 * 109.47213 * 176.04556 * 1 2 3 31 31 H 1.09003 * 109.47016 * 183.95186 * 3 2 1 32 32 H 1.08998 * 109.47406 * 303.95842 * 3 2 1 33 33 H 1.09006 * 109.47007 * 63.95631 * 3 2 1 34 34 H 1.09003 * 109.46637 * 49.99902 * 4 2 1 35 35 H 1.09001 * 109.47115 * 290.00236 * 4 2 1 36 36 H 1.09003 * 109.47319 * 60.00482 * 5 4 2 37 37 H 1.09001 * 109.47458 * 300.00188 * 5 4 2 38 38 H 0.96997 * 119.99989 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.46704 * 59.99781 * 9 8 6 40 40 H 1.09001 * 109.46959 * 300.00169 * 9 8 6 41 41 H 1.09003 * 109.47115 * 60.00260 * 10 9 8 42 42 H 1.09001 * 109.47318 * 300.00177 * 10 9 8 43 43 H 1.08994 * 109.33747 * 61.90940 * 13 11 10 44 44 H 1.09000 * 109.32539 * 302.09455 * 13 11 10 45 45 H 0.96990 * 120.00465 * 180.02562 * 18 17 15 46 46 H 1.08998 * 109.46615 * 55.97074 * 23 14 13 47 47 H 1.09004 * 109.46644 * 175.94660 * 23 14 13 48 48 H 1.08998 * 109.55450 * 178.10003 * 24 23 14 49 49 H 1.09001 * 109.55558 * 298.31096 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0444 -1.7417 2.1370 7 8 3.2961 -2.1136 3.0160 8 7 5.3591 -2.0308 2.2041 9 6 5.8841 -2.7947 3.3385 10 6 7.3930 -2.9842 3.1712 11 6 7.9415 -3.7815 4.3563 12 1 7.6719 -3.2847 5.2884 13 6 9.4621 -3.8754 4.2516 14 7 9.9860 -4.6781 5.3580 15 6 10.8038 -4.0970 6.2899 16 1 11.4258 -3.2581 6.0145 17 6 10.8335 -4.5860 7.5887 18 7 9.8429 -5.3290 8.0350 19 14 12.2828 -4.1959 8.7008 20 1 13.2598 -3.3547 7.9639 21 1 11.8034 -3.4631 9.9001 22 1 12.9377 -5.4604 9.1222 23 6 9.6387 -6.0949 5.4806 24 6 8.1317 -6.2334 5.7184 25 16 7.2427 -5.4582 4.3367 26 8 7.6320 -6.0987 3.1295 27 8 5.8637 -5.3798 4.6705 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8724 0.9234 34 1 1.5090 -1.7407 1.1756 35 1 1.7976 -0.2248 2.0628 36 1 3.9909 0.0194 0.9323 37 1 3.7023 -1.4965 0.0450 38 1 5.9578 -1.7324 1.5017 39 1 5.3978 -3.7695 3.3763 40 1 5.6859 -2.2537 4.2638 41 1 7.8796 -2.0096 3.1332 42 1 7.5909 -3.5254 2.2460 43 1 9.8895 -2.8737 4.2954 44 1 9.7302 -4.3436 3.3045 45 1 9.8635 -5.6704 8.9426 46 1 9.9110 -6.6163 4.5630 47 1 10.1804 -6.5304 6.3203 48 1 7.8670 -7.2892 5.7761 49 1 7.8625 -5.7382 6.6514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230494306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:33 Heat of formation + Delta-G solvation = -81.192173 kcal Electronic energy + Delta-G solvation = -29267.974831 eV Core-core repulsion = 25165.218151 eV Total energy + Delta-G solvation = -4102.756680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.86891 -37.72623 -37.24502 -36.39765 -35.76314 -35.27665 -33.33416 -31.82799 -31.39580 -29.87807 -27.93132 -27.81394 -25.44093 -24.28808 -23.23776 -21.87876 -21.54402 -20.67645 -20.23783 -18.27169 -17.40370 -17.12460 -16.64182 -16.17476 -16.10607 -15.57588 -15.31805 -15.11119 -15.07396 -14.95983 -14.69501 -14.11933 -13.97465 -13.72129 -13.55360 -13.31283 -13.05402 -12.72425 -12.46906 -12.28273 -12.14854 -12.10396 -12.01753 -11.79123 -11.67799 -11.51967 -11.45976 -11.39516 -11.23050 -11.17497 -11.06003 -10.93727 -10.78602 -10.29523 -10.16829 -9.89852 -9.76670 -9.32541 -9.05656 -8.73399 -8.72952 -7.14131 -6.10345 -3.57967 0.70788 2.60478 2.98069 3.22536 3.31132 3.32341 3.33627 3.71449 4.14269 4.26785 4.56070 4.60077 4.67177 4.77554 4.82218 4.84662 4.97719 5.04706 5.07721 5.11759 5.18455 5.24302 5.25000 5.30521 5.44959 5.54631 5.55882 5.62975 5.69720 5.71540 5.73062 5.74383 5.94888 6.03746 6.11525 6.27930 6.33425 6.39493 6.47904 6.63640 6.65145 7.00006 7.18968 7.42349 7.57092 8.12595 8.18321 8.86275 9.47960 9.95434 10.97370 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.002207 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.687897 B =12683.047453 C =13265.372781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.018 3.982 4 C 0.068 3.932 5 C -0.137 4.137 6 C 0.509 3.491 7 O -0.536 6.536 8 N -0.728 5.728 9 C 0.091 3.909 10 C -0.112 4.112 11 C -0.578 4.578 12 H 0.139 0.861 13 C 0.162 3.838 14 N -0.595 5.595 15 C -0.269 4.269 16 H 0.075 0.925 17 C 0.009 3.991 18 N -0.896 5.896 19 Si 0.908 3.092 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.174 3.826 24 C -0.588 4.588 25 S 2.394 3.606 26 O -0.957 6.957 27 O -0.960 6.960 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.401 0.599 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.259 0.741 46 H 0.032 0.968 47 H 0.111 0.889 48 H 0.114 0.886 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.468 9.198 -13.916 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.130 4.130 4 C -0.060 4.060 5 C -0.177 4.177 6 C 0.295 3.705 7 O -0.413 6.413 8 N -0.380 5.380 9 C -0.033 4.033 10 C -0.152 4.152 11 C -0.692 4.692 12 H 0.157 0.843 13 C 0.034 3.966 14 N -0.315 5.315 15 C -0.398 4.398 16 H 0.092 0.908 17 C -0.191 4.191 18 N -0.539 5.539 19 Si 0.737 3.263 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.046 3.954 24 C -0.723 4.723 25 S 2.580 3.420 26 O -0.954 6.954 27 O -0.957 6.957 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.235 0.765 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.129 0.871 48 H 0.132 0.868 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.514 8.250 -14.115 19.438 hybrid contribution 1.086 1.097 1.857 2.414 sum -9.428 9.346 -12.258 18.069 Atomic orbital electron populations 1.22371 0.86916 1.02531 1.00513 1.61976 1.08223 1.13886 1.43307 1.22472 1.01040 0.88896 1.00590 1.21850 0.93534 0.99295 0.91323 1.21631 0.96998 1.01265 0.97849 1.20635 0.82052 0.80134 0.87676 1.90749 1.57221 1.52932 1.40371 1.45958 1.08822 1.57224 1.26022 1.21898 0.93493 0.98259 0.89629 1.21527 0.93986 1.02335 0.97311 1.30485 1.11505 1.21117 1.06078 0.84301 1.20779 0.85584 0.98131 0.92144 1.44261 1.54945 1.04711 1.27564 1.19274 1.15567 1.16073 0.88843 0.90755 1.25119 0.97549 0.99907 0.96558 1.69947 1.29257 1.37957 1.16725 0.86157 0.82099 0.77830 0.80227 1.20049 1.21576 1.21297 1.20489 0.88740 0.85258 1.00863 1.30451 1.12225 1.11113 1.18510 1.08566 0.76242 0.79021 0.78136 1.93498 1.84515 1.73391 1.43994 1.93530 1.30498 1.86386 1.85281 0.95503 0.91308 0.91132 0.91106 0.91352 0.95507 0.89737 0.93767 0.88897 0.87904 0.76531 0.89511 0.90434 0.89163 0.89941 0.90282 0.93217 0.93073 0.94985 0.87093 0.86812 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 60.07 0.57 0.76 16 2 N -0.55 -4.68 5.02 -251.25 -1.26 -5.94 16 3 C 0.02 0.12 9.32 60.07 0.56 0.68 16 4 C 0.07 0.67 4.25 -3.83 -0.02 0.66 16 5 C -0.14 -1.21 5.62 -27.89 -0.16 -1.37 16 6 C 0.51 6.58 7.83 -10.98 -0.09 6.50 16 7 O -0.54 -9.45 15.98 5.56 0.09 -9.36 16 8 N -0.73 -8.45 5.56 -60.30 -0.33 -8.79 16 9 C 0.09 1.33 5.32 -4.05 -0.02 1.31 16 10 C -0.11 -1.47 4.81 -26.74 -0.13 -1.60 16 11 C -0.58 -9.48 2.64 -26.88 -0.07 -9.55 16 12 H 0.14 2.34 8.14 -51.92 -0.42 1.92 16 13 C 0.16 2.88 5.52 -4.25 -0.02 2.86 16 14 N -0.59 -12.93 2.83 -173.49 -0.49 -13.42 16 15 C -0.27 -6.47 9.46 -15.06 -0.14 -6.62 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 17 C 0.01 0.21 4.81 -17.43 -0.08 0.13 16 18 N -0.90 -22.82 10.12 55.49 0.56 -22.25 16 19 Si 0.91 19.82 29.60 -169.99 -5.03 14.79 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.17 3.69 5.34 -4.01 -0.02 3.67 16 24 C -0.59 -11.47 6.36 37.26 0.24 -11.23 16 25 S 2.39 44.29 4.32 -107.50 -0.46 43.83 16 26 O -0.96 -19.17 18.02 -57.81 -1.04 -20.21 16 27 O -0.96 -19.90 15.83 -57.81 -0.92 -20.81 16 28 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.07 0.42 6.47 -51.93 -0.34 0.09 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.93 8.02 -51.93 -0.42 0.52 16 35 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.09 0.63 6.55 -51.93 -0.34 0.29 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 39 H 0.09 1.53 5.65 -51.93 -0.29 1.23 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.11 2.60 5.90 -51.93 -0.31 2.30 16 48 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 49 H 0.15 3.26 7.12 -51.93 -0.37 2.89 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -32.51 395.56 -10.58 -43.10 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.28 Total: 6.93 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 0.62 Total: -13.81 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -1.53 Total: -50.40 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -1.87 Total: -50.39 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Atomic # 16 Polarization: 44.29 SS G_CDS: -0.46 Total: 43.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.51 -10.58 -43.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230494306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.096 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds