Wall clock time and date at job start Wed Apr 1 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99924 * 2 1 4 4 C 1.46901 * 111.00219 * 123.95404 * 2 1 3 5 5 C 1.52988 * 109.47108 * 169.99838 * 4 2 1 6 6 C 1.50705 * 109.47262 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00446 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00381 * 179.97438 * 8 6 5 10 10 C 1.52991 * 109.47541 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47573 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.64235 * 304.73584 * 11 10 9 13 13 C 1.52708 * 109.62770 * 184.56388 * 11 10 9 14 14 N 1.46388 * 109.77072 * 182.00679 * 13 11 10 15 15 C 1.36931 * 119.69547 * 244.31119 * 14 13 11 16 16 H 1.08000 * 120.00262 * 331.36968 * 15 14 13 17 17 C 1.38813 * 119.99851 * 151.37044 * 15 14 13 18 18 N 1.31618 * 120.00318 * 340.81284 * 17 15 14 19 19 Si 1.86797 * 120.00202 * 160.54459 * 17 15 14 20 20 H 1.48506 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47410 * 119.99543 * 19 17 15 22 22 H 1.48505 * 109.47191 * 240.00036 * 19 17 15 23 23 C 1.46383 * 120.60099 * 64.03412 * 14 13 11 24 24 C 1.53190 * 109.50944 * 295.95833 * 23 14 13 25 25 S 1.81661 * 109.55526 * 64.99933 * 11 10 9 26 26 O 1.42105 * 108.65263 * 61.06051 * 25 11 10 27 27 O 1.42102 * 108.65435 * 289.75417 * 25 11 10 28 28 H 1.09006 * 109.47185 * 296.04780 * 1 2 3 29 29 H 1.09002 * 109.47083 * 56.04117 * 1 2 3 30 30 H 1.09002 * 109.47213 * 176.04556 * 1 2 3 31 31 H 1.09003 * 109.47016 * 183.95186 * 3 2 1 32 32 H 1.08998 * 109.47406 * 303.95842 * 3 2 1 33 33 H 1.09006 * 109.47007 * 63.95631 * 3 2 1 34 34 H 1.09003 * 109.46637 * 49.99902 * 4 2 1 35 35 H 1.09001 * 109.47115 * 290.00236 * 4 2 1 36 36 H 1.09003 * 109.47319 * 60.00482 * 5 4 2 37 37 H 1.09001 * 109.47458 * 300.00188 * 5 4 2 38 38 H 0.96997 * 119.99989 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.46704 * 59.99781 * 9 8 6 40 40 H 1.09001 * 109.46959 * 300.00169 * 9 8 6 41 41 H 1.09003 * 109.47115 * 60.00260 * 10 9 8 42 42 H 1.09001 * 109.47318 * 300.00177 * 10 9 8 43 43 H 1.08994 * 109.33747 * 61.90940 * 13 11 10 44 44 H 1.09000 * 109.32539 * 302.09455 * 13 11 10 45 45 H 0.96990 * 120.00465 * 180.02562 * 18 17 15 46 46 H 1.08998 * 109.46615 * 55.97074 * 23 14 13 47 47 H 1.09004 * 109.46644 * 175.94660 * 23 14 13 48 48 H 1.08998 * 109.55450 * 178.10003 * 24 23 14 49 49 H 1.09001 * 109.55558 * 298.31096 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0444 -1.7417 2.1370 7 8 3.2961 -2.1136 3.0160 8 7 5.3591 -2.0308 2.2041 9 6 5.8841 -2.7947 3.3385 10 6 7.3930 -2.9842 3.1712 11 6 7.9415 -3.7815 4.3563 12 1 7.6719 -3.2847 5.2884 13 6 9.4621 -3.8754 4.2516 14 7 9.9860 -4.6781 5.3580 15 6 10.8038 -4.0970 6.2899 16 1 11.4258 -3.2581 6.0145 17 6 10.8335 -4.5860 7.5887 18 7 9.8429 -5.3290 8.0350 19 14 12.2828 -4.1959 8.7008 20 1 13.2598 -3.3547 7.9639 21 1 11.8034 -3.4631 9.9001 22 1 12.9377 -5.4604 9.1222 23 6 9.6387 -6.0949 5.4806 24 6 8.1317 -6.2334 5.7184 25 16 7.2427 -5.4582 4.3367 26 8 7.6320 -6.0987 3.1295 27 8 5.8637 -5.3798 4.6705 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8724 0.9234 34 1 1.5090 -1.7407 1.1756 35 1 1.7976 -0.2248 2.0628 36 1 3.9909 0.0194 0.9323 37 1 3.7023 -1.4965 0.0450 38 1 5.9578 -1.7324 1.5017 39 1 5.3978 -3.7695 3.3763 40 1 5.6859 -2.2537 4.2638 41 1 7.8796 -2.0096 3.1332 42 1 7.5909 -3.5254 2.2460 43 1 9.8895 -2.8737 4.2954 44 1 9.7302 -4.3436 3.3045 45 1 9.8635 -5.6704 8.9426 46 1 9.9110 -6.6163 4.5630 47 1 10.1804 -6.5304 6.3203 48 1 7.8670 -7.2892 5.7761 49 1 7.8625 -5.7382 6.6514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230494306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:31 Heat of formation + Delta-G solvation = -107.042470 kcal Electronic energy + Delta-G solvation = -29269.095784 eV Core-core repulsion = 25165.218151 eV Total energy + Delta-G solvation = -4103.877633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.89680 -38.85113 -38.37307 -37.89848 -37.21059 -36.70684 -34.66088 -33.33980 -32.41590 -31.39776 -29.15572 -28.46863 -26.46675 -25.82430 -24.54118 -23.07501 -22.44567 -22.18678 -21.19136 -19.78441 -18.92603 -18.24226 -17.97231 -17.33294 -17.19225 -16.97635 -16.68669 -16.41746 -16.04174 -15.98671 -15.64118 -15.52401 -15.34709 -15.17739 -14.88134 -14.38524 -14.07910 -13.80878 -13.66673 -13.58052 -13.29173 -13.27078 -13.08353 -13.02164 -13.01260 -12.79312 -12.77092 -12.62643 -12.61116 -12.40460 -12.35117 -12.21842 -11.98979 -11.91080 -11.89933 -11.34942 -10.99975 -10.82313 -10.51290 -10.15254 -9.38140 -8.89127 -7.94324 -5.42874 -0.78873 1.48336 1.54167 1.60561 1.61451 1.82388 2.03679 2.48839 2.69904 3.02305 3.12003 3.29212 3.37489 3.58244 3.77203 3.83589 3.97646 3.98575 4.07157 4.16544 4.20629 4.29927 4.37259 4.40444 4.49385 4.58290 4.64055 4.67099 4.67375 4.71481 4.81501 4.92330 4.95940 4.98707 5.00638 5.02357 5.08395 5.10251 5.33698 5.36404 5.48943 5.70494 5.97339 6.05743 6.33948 6.53467 7.05524 7.25205 7.72353 8.16409 9.11290 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.002207 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.687897 B =12683.047453 C =13265.372781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.554 5.554 3 C 0.015 3.985 4 C 0.070 3.930 5 C -0.123 4.123 6 C 0.504 3.496 7 O -0.592 6.592 8 N -0.713 5.713 9 C 0.090 3.910 10 C -0.105 4.105 11 C -0.559 4.559 12 H 0.134 0.866 13 C 0.158 3.842 14 N -0.609 5.609 15 C -0.270 4.270 16 H 0.080 0.920 17 C -0.039 4.039 18 N -0.919 5.919 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.298 1.298 22 H -0.294 1.294 23 C 0.172 3.828 24 C -0.593 4.593 25 S 2.407 3.593 26 O -0.969 6.969 27 O -0.986 6.986 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.422 0.578 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.253 0.747 46 H 0.047 0.953 47 H 0.084 0.916 48 H 0.128 0.872 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 11.293 -16.490 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.278 5.278 3 C -0.133 4.133 4 C -0.058 4.058 5 C -0.163 4.163 6 C 0.292 3.708 7 O -0.472 6.472 8 N -0.366 5.366 9 C -0.035 4.035 10 C -0.144 4.144 11 C -0.676 4.676 12 H 0.152 0.848 13 C 0.031 3.969 14 N -0.330 5.330 15 C -0.399 4.399 16 H 0.098 0.902 17 C -0.236 4.236 18 N -0.564 5.564 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.225 1.225 22 H -0.221 1.221 23 C 0.044 3.956 24 C -0.727 4.727 25 S 2.595 3.405 26 O -0.967 6.967 27 O -0.983 6.983 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.146 0.854 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.102 0.898 48 H 0.146 0.854 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.495 10.342 -16.743 21.851 hybrid contribution 0.759 0.476 2.590 2.740 sum -8.736 10.818 -14.154 19.841 Atomic orbital electron populations 1.22436 0.86480 1.02679 1.01015 1.62023 1.08792 1.14839 1.42117 1.22573 1.01874 0.87884 1.00934 1.21743 0.94406 0.98414 0.91255 1.21602 0.96030 1.02201 0.96456 1.21406 0.81919 0.79537 0.87961 1.90731 1.58606 1.55189 1.42666 1.45785 1.08924 1.56218 1.25698 1.21691 0.94452 0.96895 0.90437 1.21577 0.92723 1.03916 0.96179 1.30257 1.10590 1.19000 1.07724 0.84754 1.20967 0.85860 0.98724 0.91387 1.44412 1.55422 1.05179 1.28004 1.19556 1.15678 1.15612 0.89088 0.90189 1.25730 0.99283 1.00657 0.97939 1.70074 1.30474 1.39286 1.16541 0.85313 0.80033 0.77087 0.78521 1.18989 1.22499 1.22135 1.20415 0.89246 0.85498 1.00394 1.30413 1.11583 1.12331 1.18330 1.08120 0.75417 0.79849 0.77080 1.93471 1.84572 1.74542 1.44071 1.93506 1.32190 1.87098 1.85464 0.95921 0.89673 0.91430 0.89848 0.90048 0.95990 0.91647 0.95596 0.85964 0.85800 0.73932 0.92786 0.91691 0.85354 0.88132 0.88466 0.91299 0.93786 0.93508 0.89792 0.85422 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.57 127.69 1.22 1.52 16 2 N -0.55 -8.49 5.02 -948.83 -4.76 -13.25 16 3 C 0.02 0.17 9.32 127.69 1.19 1.36 16 4 C 0.07 1.35 4.25 86.30 0.37 1.71 16 5 C -0.12 -1.89 5.62 29.85 0.17 -1.72 16 6 C 0.50 12.43 7.83 87.66 0.69 13.12 16 7 O -0.59 -21.28 15.98 -3.03 -0.05 -21.33 16 8 N -0.71 -14.86 5.56 -463.07 -2.57 -17.43 16 9 C 0.09 2.51 5.32 86.38 0.46 2.97 16 10 C -0.10 -2.39 4.81 30.59 0.15 -2.25 16 11 C -0.56 -17.22 2.64 30.50 0.08 -17.14 16 12 H 0.13 4.37 8.14 -2.38 -0.02 4.36 16 13 C 0.16 5.16 5.52 86.30 0.48 5.63 16 14 N -0.61 -25.77 2.83 -702.79 -1.99 -27.76 16 15 C -0.27 -12.71 9.46 84.03 0.79 -11.92 16 16 H 0.08 3.62 7.89 -2.91 -0.02 3.60 16 17 C -0.04 -1.93 4.81 84.86 0.41 -1.52 16 18 N -0.92 -47.76 10.12 21.65 0.22 -47.54 16 19 Si 0.96 40.80 29.60 68.60 2.03 42.83 16 20 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 C 0.17 7.29 5.34 86.46 0.46 7.75 16 24 C -0.59 -23.44 6.36 72.05 0.46 -22.98 16 25 S 2.41 87.90 4.32 -56.49 -0.24 87.66 16 26 O -0.97 -37.54 18.02 -127.39 -2.30 -39.83 16 27 O -0.99 -41.49 15.83 -127.39 -2.02 -43.51 16 28 H 0.02 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 31 H 0.08 0.71 6.47 -2.39 -0.02 0.69 16 32 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 33 H 0.02 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.06 1.48 8.02 -2.39 -0.02 1.46 16 35 H 0.03 0.58 8.08 -2.39 -0.02 0.56 16 36 H 0.12 1.19 6.55 -2.39 -0.02 1.18 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.42 4.95 8.47 -92.71 -0.79 4.16 16 39 H 0.05 1.90 5.65 -2.39 -0.01 1.88 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.10 2.86 7.87 -2.39 -0.02 2.84 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.25 12.95 8.31 -92.72 -0.77 12.18 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.08 4.02 5.90 -2.39 -0.01 4.01 16 48 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 49 H 0.13 5.80 7.12 -2.39 -0.02 5.79 16 Total: -1.00 -71.88 395.56 -4.60 -76.48 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.16 Total: 27.14 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 6.92 Total: -23.47 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -9.10 Total: -105.98 kcal Atomic # 8 Polarization: -100.31 SS G_CDS: -4.36 Total: -104.67 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 87.90 SS G_CDS: -0.24 Total: 87.66 kcal Total: -71.88 -4.60 -76.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230494306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.558 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds