Wall clock time and date at job start Wed Apr 1 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99765 * 2 1 4 4 C 1.50701 * 109.47118 * 275.00397 * 3 2 1 5 5 O 1.21285 * 119.99819 * 5.03293 * 4 3 2 6 6 N 1.34772 * 119.99983 * 185.03776 * 4 3 2 7 7 C 1.46958 * 120.36933 * 175.08015 * 6 4 3 8 8 C 1.52339 * 109.10860 * 68.33690 * 7 6 4 9 9 C 1.53795 * 109.15999 * 72.70240 * 8 7 6 10 10 C 1.52448 * 109.40689 * 282.16676 * 9 8 7 11 11 C 1.53966 * 110.73146 * 113.72632 * 10 9 8 12 12 C 1.52872 * 109.72595 * 315.63237 * 11 10 9 13 13 H 1.09001 * 109.49828 * 47.09266 * 12 11 10 14 14 N 1.46502 * 109.48088 * 167.12634 * 12 11 10 15 15 C 1.36942 * 119.99746 * 205.19485 * 14 12 11 16 16 H 1.08000 * 120.00018 * 359.72752 * 15 14 12 17 17 C 1.38809 * 119.99689 * 179.72752 * 15 14 12 18 18 N 1.31622 * 120.00522 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47346 * 59.99846 * 19 17 15 21 21 H 1.48507 * 109.47302 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47021 * 299.99367 * 19 17 15 23 23 C 1.45340 * 120.36237 * 355.05729 * 6 4 3 24 24 S 1.65598 * 120.00228 * 180.02562 * 2 1 3 25 25 C 1.81397 * 104.44918 * 269.99838 * 24 2 1 26 26 O 1.42105 * 104.27695 * 26.06942 * 24 2 1 27 27 O 1.42103 * 104.27543 * 153.92663 * 24 2 1 28 28 H 1.09001 * 109.47234 * 89.99892 * 1 2 3 29 29 H 1.09003 * 109.47096 * 209.99628 * 1 2 3 30 30 H 1.08999 * 109.47393 * 329.99557 * 1 2 3 31 31 H 1.08997 * 109.46995 * 155.00528 * 3 2 1 32 32 H 1.09004 * 109.46798 * 35.00248 * 3 2 1 33 33 H 1.08993 * 109.53384 * 188.22559 * 7 6 4 34 34 H 1.09000 * 109.52824 * 308.37474 * 7 6 4 35 35 H 1.09003 * 109.52404 * 192.60824 * 8 7 6 36 36 H 1.09003 * 109.51954 * 312.73306 * 8 7 6 37 37 H 1.09001 * 109.47952 * 42.14232 * 9 8 7 38 38 H 1.08995 * 109.48671 * 162.17133 * 9 8 7 39 39 H 1.09001 * 109.22522 * 234.04523 * 10 9 8 40 40 H 1.09000 * 109.22959 * 353.44874 * 10 9 8 41 41 H 1.08996 * 109.42352 * 195.55494 * 11 10 9 42 42 H 1.08997 * 109.42238 * 75.71359 * 11 10 9 43 43 H 0.96999 * 120.00326 * 24.92171 * 14 12 11 44 44 H 0.96992 * 120.00660 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.68034 * 103.63965 * 23 6 4 46 46 H 1.09002 * 109.67817 * 343.09151 * 23 6 4 47 47 H 1.08994 * 109.47426 * 59.99851 * 25 24 2 48 48 H 1.08998 * 109.47358 * 180.02562 * 25 24 2 49 49 H 1.09010 * 109.46800 * 299.99990 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4154 5 8 1.8001 1.1726 -2.3243 6 7 3.0713 2.8695 -1.6712 7 6 3.3067 3.3001 -3.0564 8 6 1.9921 3.7777 -3.6603 9 6 1.6176 5.1361 -3.0439 10 6 1.0375 4.9177 -1.6512 11 6 1.9662 5.5092 -0.5750 12 6 3.4162 5.1356 -0.8828 13 1 3.6257 5.3270 -1.9352 14 7 4.3151 5.9401 -0.0515 15 6 5.5970 6.1838 -0.4669 16 1 5.9468 5.7792 -1.4051 17 6 6.4469 6.9509 0.3181 18 7 6.0205 7.4444 1.4613 19 14 8.1953 7.2839 -0.2488 20 1 8.1662 7.9987 -1.5501 21 1 8.8922 8.1209 0.7608 22 1 8.9180 5.9963 -0.4073 23 6 3.6342 3.6471 -0.5800 24 16 2.2930 -1.4341 -0.0006 25 6 2.5194 -1.8268 1.7558 26 8 1.3970 -2.3559 -0.6063 27 8 3.5395 -1.1187 -0.6058 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1857 1.1178 0.4342 32 1 1.6500 2.0043 0.5895 33 1 4.0299 4.1154 -3.0667 34 1 3.6930 2.4628 -3.6376 35 1 2.1048 3.8859 -4.7391 36 1 1.2081 3.0512 -3.4470 37 1 2.5079 5.7609 -2.9730 38 1 0.8767 5.6290 -3.6733 39 1 0.0624 5.4008 -1.5887 40 1 0.9202 3.8484 -1.4747 41 1 1.6888 5.1119 0.4013 42 1 1.8654 6.5945 -0.5660 43 1 4.0010 6.3036 0.7912 44 1 6.6145 7.9801 2.0100 45 1 4.7014 3.4423 -0.4956 46 1 3.1348 3.3855 0.3530 47 1 1.5453 -1.9196 2.2358 48 1 3.0627 -2.7669 1.8508 49 1 3.0867 -1.0295 2.2362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264118853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:33 Heat of formation + Delta-G solvation = -73.109190 kcal Electronic energy + Delta-G solvation = -31089.207479 eV Core-core repulsion = 26986.801304 eV Total energy + Delta-G solvation = -4102.406176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.35065 -37.82282 -37.27536 -36.11618 -35.82618 -34.53469 -34.03408 -32.29115 -30.30019 -29.77292 -28.88213 -26.96574 -26.18568 -25.18707 -23.77443 -22.35294 -21.48768 -19.72406 -19.22631 -18.51500 -17.80458 -17.33875 -17.02465 -16.62515 -16.27801 -15.77596 -15.67336 -14.88353 -14.42834 -14.40678 -14.23615 -13.96704 -13.69422 -13.56778 -13.49962 -13.35135 -13.11038 -13.05446 -12.82279 -12.60298 -12.36174 -12.22483 -12.20337 -11.81682 -11.78645 -11.57729 -11.40993 -11.25616 -11.19720 -10.88830 -10.82674 -10.66538 -10.45381 -10.29723 -10.23522 -10.07255 -9.81115 -9.69199 -9.10966 -8.87627 -8.18918 -7.07091 -5.86266 -3.16319 0.00085 2.35821 2.83035 3.28675 3.39278 3.44416 3.44889 3.73764 3.89827 4.30879 4.50256 4.54501 4.63243 4.70939 4.99729 5.02607 5.10652 5.15970 5.17610 5.29718 5.35489 5.37907 5.44633 5.48595 5.60598 5.64277 5.73546 5.78238 5.84792 5.86964 5.95867 6.00655 6.11419 6.17038 6.27152 6.28951 6.30501 6.38817 6.55437 6.63517 6.71165 6.81384 6.98761 7.60819 7.74872 8.31500 8.42575 9.43699 9.98579 10.33205 11.35694 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.003417 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.048507 B = 8191.426345 C = 9290.261761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.985 5.985 3 C 0.105 3.895 4 C 0.499 3.501 5 O -0.538 6.538 6 N -0.596 5.596 7 C 0.117 3.883 8 C -0.136 4.136 9 C -0.126 4.126 10 C -0.113 4.113 11 C -0.123 4.123 12 C 0.156 3.844 13 H 0.070 0.930 14 N -0.719 5.719 15 C -0.245 4.245 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.079 3.921 24 S 2.609 3.391 25 C -0.676 4.676 26 O -0.951 6.951 27 O -0.945 6.945 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.385 0.615 44 H 0.257 0.743 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 -13.490 0.513 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.821 5.821 3 C -0.024 4.024 4 C 0.284 3.716 5 O -0.415 6.415 6 N -0.329 5.329 7 C -0.005 4.005 8 C -0.175 4.175 9 C -0.164 4.164 10 C -0.151 4.151 11 C -0.161 4.161 12 C 0.045 3.955 13 H 0.087 0.913 14 N -0.360 5.360 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.047 4.047 24 S 2.701 3.299 25 C -0.826 4.826 26 O -0.941 6.941 27 O -0.936 6.936 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.924 -14.229 -0.765 18.580 hybrid contribution 0.929 0.583 0.945 1.448 sum -10.994 -13.646 0.180 17.525 Atomic orbital electron populations 1.21471 0.77762 1.02360 1.03132 1.57112 1.15439 1.20127 1.89472 1.21238 0.98586 0.86778 0.95819 1.20890 0.78913 0.80303 0.91487 1.90647 1.46992 1.57313 1.46570 1.47875 1.51637 1.25649 1.07785 1.21495 0.97584 0.99944 0.81506 1.22041 0.98748 0.97351 0.99319 1.21827 1.01416 0.97157 0.95969 1.21654 0.97948 1.00774 0.94744 1.22034 0.95313 1.01058 0.97736 1.20928 0.89262 0.88472 0.96841 0.91267 1.42404 1.10468 1.59574 1.23556 1.19168 0.88285 1.26742 1.03412 0.91185 1.24726 0.98400 1.00397 0.96891 1.69640 1.35874 1.39264 1.13042 0.86308 0.84686 0.77847 0.77571 1.21199 1.21701 1.21169 1.22780 0.99177 0.94562 0.88168 1.05073 0.74116 0.73283 0.77412 1.30619 1.11691 1.12200 1.28049 1.93602 1.64685 1.62553 1.73301 1.93643 1.44116 1.82638 1.73164 0.91603 0.91212 0.91072 0.87258 0.87195 0.89240 0.91638 0.91725 0.90418 0.90488 0.92761 0.93118 0.92309 0.92651 0.91607 0.78149 0.93367 0.90786 0.91254 0.85436 0.85451 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.14 59.85 0.61 1.45 16 2 N -0.98 -10.26 2.63 -123.05 -0.32 -10.59 16 3 C 0.11 1.17 4.16 -5.19 -0.02 1.15 16 4 C 0.50 7.46 6.27 -10.99 -0.07 7.39 16 5 O -0.54 -9.56 14.92 5.55 0.08 -9.48 16 6 N -0.60 -8.81 1.68 -174.36 -0.29 -9.11 16 7 C 0.12 1.71 5.20 -4.13 -0.02 1.69 16 8 C -0.14 -1.83 5.54 -26.66 -0.15 -1.97 16 9 C -0.13 -1.66 5.49 -26.60 -0.15 -1.80 16 10 C -0.11 -1.48 5.40 -26.51 -0.14 -1.62 16 11 C -0.12 -1.82 5.22 -26.29 -0.14 -1.96 16 12 C 0.16 2.68 2.29 -67.76 -0.16 2.53 16 13 H 0.07 1.24 3.29 -51.93 -0.17 1.07 16 14 N -0.72 -16.09 5.12 -53.26 -0.27 -16.36 16 15 C -0.25 -6.24 9.89 -15.06 -0.15 -6.39 16 16 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 19 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.08 1.22 5.40 -4.43 -0.02 1.20 16 24 S 2.61 28.38 5.97 -107.50 -0.64 27.74 16 25 C -0.68 -4.02 10.99 101.05 1.11 -2.91 16 26 O -0.95 -13.16 17.09 -57.54 -0.98 -14.14 16 27 O -0.95 -14.14 16.99 -57.54 -0.98 -15.12 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 30 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 31 H 0.11 1.09 7.50 -51.93 -0.39 0.70 16 32 H 0.11 0.93 7.40 -51.93 -0.38 0.55 16 33 H 0.09 1.32 6.07 -51.93 -0.32 1.00 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.16 6.04 -51.93 -0.31 0.85 16 37 H 0.08 1.11 5.47 -51.93 -0.28 0.83 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.79 5.38 -51.93 -0.28 0.51 16 41 H 0.05 0.76 7.87 -51.93 -0.41 0.36 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.38 9.23 7.80 -40.82 -0.32 8.91 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 46 H 0.07 0.93 5.89 -51.93 -0.31 0.62 16 47 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 49 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -34.99 385.78 -9.04 -44.04 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.76 Total: 8.15 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 0.61 Total: -1.56 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.17 Total: -61.76 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.88 Total: -38.74 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 28.38 SS G_CDS: -0.64 Total: 27.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.99 -9.04 -44.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264118853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.071 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds