Wall clock time and date at job start Wed Apr 1 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99765 * 2 1 4 4 C 1.50701 * 109.47118 * 275.00397 * 3 2 1 5 5 O 1.21285 * 119.99819 * 5.03293 * 4 3 2 6 6 N 1.34772 * 119.99983 * 185.03776 * 4 3 2 7 7 C 1.46958 * 120.36933 * 175.08015 * 6 4 3 8 8 C 1.52339 * 109.10860 * 68.33690 * 7 6 4 9 9 C 1.53795 * 109.15999 * 72.70240 * 8 7 6 10 10 C 1.52448 * 109.40689 * 282.16676 * 9 8 7 11 11 C 1.53966 * 110.73146 * 113.72632 * 10 9 8 12 12 C 1.52872 * 109.72595 * 315.63237 * 11 10 9 13 13 H 1.09001 * 109.49828 * 47.09266 * 12 11 10 14 14 N 1.46502 * 109.48088 * 167.12634 * 12 11 10 15 15 C 1.36942 * 119.99746 * 205.19485 * 14 12 11 16 16 H 1.08000 * 120.00018 * 359.72752 * 15 14 12 17 17 C 1.38809 * 119.99689 * 179.72752 * 15 14 12 18 18 N 1.31622 * 120.00522 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47346 * 59.99846 * 19 17 15 21 21 H 1.48507 * 109.47302 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47021 * 299.99367 * 19 17 15 23 23 C 1.45340 * 120.36237 * 355.05729 * 6 4 3 24 24 S 1.65598 * 120.00228 * 180.02562 * 2 1 3 25 25 C 1.81397 * 104.44918 * 269.99838 * 24 2 1 26 26 O 1.42105 * 104.27695 * 26.06942 * 24 2 1 27 27 O 1.42103 * 104.27543 * 153.92663 * 24 2 1 28 28 H 1.09001 * 109.47234 * 89.99892 * 1 2 3 29 29 H 1.09003 * 109.47096 * 209.99628 * 1 2 3 30 30 H 1.08999 * 109.47393 * 329.99557 * 1 2 3 31 31 H 1.08997 * 109.46995 * 155.00528 * 3 2 1 32 32 H 1.09004 * 109.46798 * 35.00248 * 3 2 1 33 33 H 1.08993 * 109.53384 * 188.22559 * 7 6 4 34 34 H 1.09000 * 109.52824 * 308.37474 * 7 6 4 35 35 H 1.09003 * 109.52404 * 192.60824 * 8 7 6 36 36 H 1.09003 * 109.51954 * 312.73306 * 8 7 6 37 37 H 1.09001 * 109.47952 * 42.14232 * 9 8 7 38 38 H 1.08995 * 109.48671 * 162.17133 * 9 8 7 39 39 H 1.09001 * 109.22522 * 234.04523 * 10 9 8 40 40 H 1.09000 * 109.22959 * 353.44874 * 10 9 8 41 41 H 1.08996 * 109.42352 * 195.55494 * 11 10 9 42 42 H 1.08997 * 109.42238 * 75.71359 * 11 10 9 43 43 H 0.96999 * 120.00326 * 24.92171 * 14 12 11 44 44 H 0.96992 * 120.00660 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.68034 * 103.63965 * 23 6 4 46 46 H 1.09002 * 109.67817 * 343.09151 * 23 6 4 47 47 H 1.08994 * 109.47426 * 59.99851 * 25 24 2 48 48 H 1.08998 * 109.47358 * 180.02562 * 25 24 2 49 49 H 1.09010 * 109.46800 * 299.99990 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4154 5 8 1.8001 1.1726 -2.3243 6 7 3.0713 2.8695 -1.6712 7 6 3.3067 3.3001 -3.0564 8 6 1.9921 3.7777 -3.6603 9 6 1.6176 5.1361 -3.0439 10 6 1.0375 4.9177 -1.6512 11 6 1.9662 5.5092 -0.5750 12 6 3.4162 5.1356 -0.8828 13 1 3.6257 5.3270 -1.9352 14 7 4.3151 5.9401 -0.0515 15 6 5.5970 6.1838 -0.4669 16 1 5.9468 5.7792 -1.4051 17 6 6.4469 6.9509 0.3181 18 7 6.0205 7.4444 1.4613 19 14 8.1953 7.2839 -0.2488 20 1 8.1662 7.9987 -1.5501 21 1 8.8922 8.1209 0.7608 22 1 8.9180 5.9963 -0.4073 23 6 3.6342 3.6471 -0.5800 24 16 2.2930 -1.4341 -0.0006 25 6 2.5194 -1.8268 1.7558 26 8 1.3970 -2.3559 -0.6063 27 8 3.5395 -1.1187 -0.6058 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1857 1.1178 0.4342 32 1 1.6500 2.0043 0.5895 33 1 4.0299 4.1154 -3.0667 34 1 3.6930 2.4628 -3.6376 35 1 2.1048 3.8859 -4.7391 36 1 1.2081 3.0512 -3.4470 37 1 2.5079 5.7609 -2.9730 38 1 0.8767 5.6290 -3.6733 39 1 0.0624 5.4008 -1.5887 40 1 0.9202 3.8484 -1.4747 41 1 1.6888 5.1119 0.4013 42 1 1.8654 6.5945 -0.5660 43 1 4.0010 6.3036 0.7912 44 1 6.6145 7.9801 2.0100 45 1 4.7014 3.4423 -0.4956 46 1 3.1348 3.3855 0.3530 47 1 1.5453 -1.9196 2.2358 48 1 3.0627 -2.7669 1.8508 49 1 3.0867 -1.0295 2.2362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264118853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:32 Heat of formation + Delta-G solvation = -98.866754 kcal Electronic energy + Delta-G solvation = -31090.324411 eV Core-core repulsion = 26986.801304 eV Total energy + Delta-G solvation = -4103.523107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.54517 -39.02733 -38.21740 -37.06334 -36.77045 -36.07273 -35.21750 -33.90571 -31.79857 -30.31243 -29.93370 -28.26177 -27.34482 -26.17169 -25.39379 -23.58203 -22.76395 -20.90728 -20.25199 -19.53899 -19.14503 -18.66570 -18.18932 -17.57331 -17.26245 -16.99784 -16.78906 -16.34697 -15.74137 -15.57208 -15.26385 -15.06663 -15.02562 -14.84377 -14.34157 -14.19656 -14.04623 -13.95951 -13.81498 -13.76507 -13.60324 -13.28406 -13.17438 -13.08527 -12.89240 -12.75900 -12.62385 -12.54548 -12.49098 -12.29619 -12.16858 -11.94132 -11.87995 -11.73126 -11.46852 -11.40869 -11.20291 -11.11722 -10.75214 -9.90403 -9.48406 -8.91144 -7.89489 -5.16718 -0.75764 1.52039 1.52374 1.56558 1.58043 1.69342 2.14151 2.60684 2.99689 3.13316 3.44319 3.54458 3.65465 3.85385 3.91539 4.06187 4.07607 4.14832 4.15932 4.25037 4.26930 4.31101 4.40091 4.47846 4.60827 4.62795 4.70383 4.73260 4.80247 4.88945 4.92033 4.97541 5.01774 5.07709 5.10969 5.17139 5.23535 5.38346 5.41704 5.43817 5.47031 5.56594 5.60617 5.76023 6.33086 6.55071 7.25139 7.40927 8.15539 8.38885 9.33075 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.003417 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.048507 B = 8191.426345 C = 9290.261761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.986 5.986 3 C 0.101 3.899 4 C 0.491 3.509 5 O -0.571 6.571 6 N -0.595 5.595 7 C 0.113 3.887 8 C -0.126 4.126 9 C -0.123 4.123 10 C -0.105 4.105 11 C -0.114 4.114 12 C 0.153 3.847 13 H 0.063 0.937 14 N -0.728 5.728 15 C -0.235 4.235 16 H 0.072 0.928 17 C -0.065 4.065 18 N -0.964 5.964 19 Si 0.959 3.041 20 H -0.282 1.282 21 H -0.298 1.298 22 H -0.281 1.281 23 C 0.092 3.908 24 S 2.598 3.402 25 C -0.642 4.642 26 O -0.994 6.994 27 O -1.000 7.000 28 H 0.035 0.965 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.157 0.843 48 H 0.145 0.855 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -14.174 2.019 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.822 5.822 3 C -0.028 4.028 4 C 0.278 3.722 5 O -0.451 6.451 6 N -0.328 5.328 7 C -0.010 4.010 8 C -0.165 4.165 9 C -0.160 4.160 10 C -0.143 4.143 11 C -0.153 4.153 12 C 0.045 3.955 13 H 0.081 0.919 14 N -0.368 5.368 15 C -0.367 4.367 16 H 0.090 0.910 17 C -0.258 4.258 18 N -0.614 5.614 19 Si 0.790 3.210 20 H -0.208 1.208 21 H -0.225 1.225 22 H -0.208 1.208 23 C -0.034 4.034 24 S 2.696 3.304 25 C -0.796 4.796 26 O -0.984 6.984 27 O -0.990 6.990 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.115 0.885 47 H 0.175 0.825 48 H 0.163 0.837 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.110 -14.937 0.651 19.885 hybrid contribution 1.229 0.709 0.442 1.486 sum -11.881 -14.228 1.094 18.568 Atomic orbital electron populations 1.21633 0.76776 1.04845 1.02005 1.57003 1.16055 1.19447 1.89714 1.21435 1.00128 0.87853 0.93367 1.21705 0.77850 0.79591 0.93047 1.90635 1.48269 1.58040 1.48113 1.47875 1.51554 1.25893 1.07488 1.21515 0.98255 0.99360 0.81830 1.21937 0.97386 0.97104 1.00030 1.21790 1.01211 0.96576 0.96467 1.21592 0.98174 1.00686 0.93871 1.21931 0.93707 1.00410 0.99208 1.21099 0.89971 0.88792 0.95689 0.91923 1.42519 1.10193 1.60363 1.23723 1.19478 0.89427 1.24897 1.02856 0.90986 1.25348 1.01557 1.01499 0.97428 1.69766 1.36655 1.40802 1.14225 0.85429 0.81216 0.77516 0.76885 1.20846 1.22473 1.20775 1.22475 0.98224 0.93204 0.89472 1.05087 0.72679 0.72856 0.79762 1.30313 1.14177 1.13724 1.21408 1.93544 1.65287 1.63513 1.76087 1.93575 1.45948 1.83244 1.76236 0.94636 0.88961 0.88359 0.86047 0.83702 0.89714 0.92745 0.90563 0.91724 0.91893 0.91243 0.91440 0.92361 0.91066 0.92894 0.79174 0.94136 0.93156 0.88464 0.82462 0.83701 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.14 127.77 1.30 2.69 16 2 N -0.99 -18.71 2.63 -543.20 -1.43 -20.14 16 3 C 0.10 2.02 4.16 85.63 0.36 2.38 16 4 C 0.49 14.28 6.27 87.66 0.55 14.83 16 5 O -0.57 -20.49 14.92 -3.05 -0.05 -20.53 16 6 N -0.60 -17.20 1.68 -823.95 -1.39 -18.58 16 7 C 0.11 3.31 5.20 86.07 0.45 3.76 16 8 C -0.13 -3.31 5.54 30.64 0.17 -3.14 16 9 C -0.12 -3.05 5.49 30.68 0.17 -2.88 16 10 C -0.11 -2.52 5.40 30.74 0.17 -2.35 16 11 C -0.11 -3.16 5.22 30.88 0.16 -3.00 16 12 C 0.15 5.14 2.29 45.10 0.10 5.24 16 13 H 0.06 2.22 3.29 -2.39 -0.01 2.21 16 14 N -0.73 -32.29 5.12 -322.42 -1.65 -33.94 16 15 C -0.23 -11.92 9.89 84.03 0.83 -11.09 16 16 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 17 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 18 N -0.96 -55.23 13.06 21.65 0.28 -54.95 16 19 Si 0.96 44.11 29.55 68.60 2.03 46.14 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 C 0.09 2.73 5.40 86.75 0.47 3.20 16 24 S 2.60 53.62 5.97 -56.49 -0.34 53.29 16 25 C -0.64 -4.91 10.99 113.37 1.25 -3.66 16 26 O -0.99 -27.48 17.09 -127.65 -2.18 -29.66 16 27 O -1.00 -30.15 16.99 -127.65 -2.17 -32.32 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.95 7.79 -2.39 -0.02 0.93 16 30 H 0.10 0.93 7.94 -2.39 -0.02 0.91 16 31 H 0.12 2.14 7.50 -2.39 -0.02 2.12 16 32 H 0.15 1.85 7.40 -2.39 -0.02 1.83 16 33 H 0.08 2.53 6.07 -2.39 -0.01 2.52 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.90 6.04 -2.39 -0.01 1.89 16 37 H 0.06 1.76 5.47 -2.39 -0.01 1.75 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.43 5.38 -2.39 -0.01 1.42 16 41 H 0.07 1.75 7.87 -2.39 -0.02 1.73 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.38 17.94 7.80 -92.71 -0.72 17.22 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 45 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 46 H 0.10 2.33 5.89 -2.39 -0.01 2.32 16 47 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.15 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -78.68 385.78 -0.22 -78.90 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.24 Total: 28.87 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 6.43 Total: 2.93 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -4.19 Total: -127.62 kcal Atomic # 8 Polarization: -78.12 SS G_CDS: -4.40 Total: -82.51 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 53.62 SS G_CDS: -0.34 Total: 53.29 kcal Total: -78.68 -0.22 -78.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264118853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.964 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds