Wall clock time and date at job start Wed Apr 1 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81398 * 109.46779 * 2 1 4 4 O 1.42104 * 110.54386 * 68.37716 * 3 2 1 5 5 O 1.42101 * 110.54614 * 291.62327 * 3 2 1 6 6 N 1.65599 * 104.45010 * 180.02562 * 3 2 1 7 7 C 1.46507 * 119.99914 * 64.99748 * 6 3 2 8 8 C 1.50695 * 109.47040 * 165.00115 * 7 6 3 9 9 O 1.21287 * 120.00232 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00137 * 180.02562 * 8 7 6 11 11 C 1.46922 * 120.62683 * 5.45314 * 10 8 7 12 12 C 1.53200 * 108.77439 * 126.36899 * 11 10 8 13 13 C 1.53044 * 109.30809 * 54.63419 * 12 11 10 14 14 H 1.08999 * 109.45832 * 58.64542 * 13 12 11 15 15 C 1.52999 * 109.45485 * 178.61362 * 13 12 11 16 16 C 1.53032 * 109.53922 * 298.63324 * 13 12 11 17 17 C 1.46926 * 120.63305 * 185.43261 * 10 8 7 18 18 H 1.08997 * 109.58405 * 113.69832 * 17 10 8 19 19 C 1.53006 * 109.58589 * 353.41946 * 17 10 8 20 20 N 1.46500 * 109.46816 * 179.97438 * 19 17 10 21 21 C 1.36936 * 119.99718 * 174.98163 * 20 19 17 22 22 H 1.08002 * 119.99881 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99728 * 179.72238 * 21 20 19 24 24 N 1.31617 * 120.00245 * 0.27641 * 23 21 20 25 25 Si 1.86799 * 119.99626 * 180.27335 * 23 21 20 26 26 H 1.48504 * 109.47466 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47228 * 120.00314 * 25 23 21 28 28 H 1.48507 * 109.47296 * 239.99673 * 25 23 21 29 29 H 1.09003 * 109.47008 * 299.99606 * 1 2 3 30 30 H 1.08997 * 109.47406 * 60.00035 * 1 2 3 31 31 H 1.09008 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47008 * 240.00394 * 2 1 3 33 33 H 1.08997 * 109.47406 * 119.99965 * 2 1 3 34 34 H 0.96997 * 120.00421 * 245.00098 * 6 3 2 35 35 H 1.09004 * 109.46876 * 45.00178 * 7 6 3 36 36 H 1.08999 * 109.47348 * 285.00398 * 7 6 3 37 37 H 1.08993 * 109.59160 * 246.15712 * 11 10 8 38 38 H 1.09002 * 109.58919 * 6.44429 * 11 10 8 39 39 H 1.08998 * 109.49323 * 174.58824 * 12 11 10 40 40 H 1.08997 * 109.49570 * 294.65251 * 12 11 10 41 41 H 1.08999 * 109.47371 * 59.99927 * 15 13 12 42 42 H 1.09001 * 109.47048 * 180.02562 * 15 13 12 43 43 H 1.09004 * 109.47247 * 299.99743 * 15 13 12 44 44 H 1.08995 * 109.50191 * 301.41761 * 16 13 12 45 45 H 1.09005 * 109.49995 * 181.31635 * 16 13 12 46 46 H 1.09001 * 109.47200 * 59.95180 * 19 17 10 47 47 H 1.09000 * 109.46884 * 299.95627 * 19 17 10 48 48 H 0.96994 * 120.00101 * 354.97721 * 20 19 17 49 49 H 0.97003 * 120.00099 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 8 1.8384 2.3439 1.2370 5 8 1.8384 2.3439 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9391 1.2791 -1.0793 9 8 6.3758 1.9358 -0.1579 10 7 6.7709 0.8282 -2.0392 11 6 6.2430 0.1346 -3.2220 12 6 6.7749 0.8295 -4.4794 13 6 8.3028 0.8901 -4.4161 14 1 8.7033 -0.1205 -4.3366 15 6 8.8396 1.5526 -5.6865 16 6 8.7325 1.7062 -3.1949 17 6 8.2228 1.0213 -1.9230 18 1 8.7117 0.0542 -1.8051 19 6 8.5276 1.9014 -0.7091 20 7 9.9757 2.0917 -0.5952 21 6 10.4828 2.9318 0.3599 22 1 9.8152 3.4543 1.0290 23 6 11.8552 3.1076 0.4715 24 7 12.6688 2.4712 -0.3442 25 14 12.5473 4.2477 1.7794 26 1 11.4319 4.8378 2.5624 27 1 13.4357 3.4782 2.6871 28 1 13.3247 5.3331 1.1291 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.2987 1.8765 0.7604 35 1 4.0527 1.3773 -2.0723 36 1 4.3227 -0.1131 -1.1373 37 1 6.5706 -0.9049 -3.2126 38 1 5.1537 0.1744 -3.2131 39 1 6.4692 0.2679 -5.3622 40 1 6.3721 1.8408 -4.5341 41 1 8.4388 2.5630 -5.7666 42 1 9.9278 1.5955 -5.6419 43 1 8.5347 0.9708 -6.5564 44 1 8.3118 2.7095 -3.2614 45 1 9.8203 1.7686 -3.1634 46 1 8.1522 1.4186 0.1932 47 1 8.0426 2.8698 -0.8316 48 1 10.5753 1.6227 -1.1964 49 1 13.6278 2.5939 -0.2659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264552133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:45 Heat of formation + Delta-G solvation = -85.530367 kcal Electronic energy + Delta-G solvation = -29866.675915 eV Core-core repulsion = 25763.731117 eV Total energy + Delta-G solvation = -4102.944798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.58828 -37.86742 -37.37309 -36.23587 -35.30339 -34.46486 -33.97429 -33.60917 -32.01263 -29.81194 -28.72515 -26.91486 -25.45210 -24.51396 -23.53995 -22.95042 -21.19533 -20.36884 -19.70499 -19.21591 -18.11763 -17.14024 -17.03669 -16.68255 -16.27680 -15.90320 -15.72882 -15.15152 -14.72535 -14.54989 -14.30737 -14.23421 -14.05356 -13.69487 -13.57406 -13.27667 -13.10784 -12.98970 -12.89829 -12.73266 -12.38612 -12.33356 -12.27399 -12.15514 -12.03893 -11.87194 -11.78896 -11.52201 -11.04852 -11.02214 -10.93317 -10.77598 -10.69653 -10.42162 -10.24947 -9.95783 -9.88655 -9.65874 -8.94893 -8.83180 -8.41759 -6.77138 -5.67138 -2.93410 -0.09798 2.33025 2.59139 2.95422 3.46801 3.50322 3.56410 3.59507 3.81288 4.12314 4.23510 4.36615 4.55762 4.69346 4.70534 4.74610 4.78713 4.84709 4.92823 5.06778 5.11433 5.16091 5.20834 5.23924 5.37228 5.45197 5.54388 5.59623 5.67013 5.68650 5.76176 5.84903 5.90323 6.02378 6.15122 6.21569 6.27076 6.31417 6.58079 6.72409 6.73974 7.08484 7.23570 7.44374 7.84536 8.20008 8.53827 9.63673 10.22086 10.56901 11.56451 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003048 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.786458 B = 9183.836995 C =11381.284495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.634 4.634 3 S 2.615 3.385 4 O -0.952 6.952 5 O -0.955 6.955 6 N -1.107 6.107 7 C 0.094 3.906 8 C 0.505 3.495 9 O -0.503 6.503 10 N -0.604 5.604 11 C 0.105 3.895 12 C -0.130 4.130 13 C -0.094 4.094 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.120 4.120 17 C 0.140 3.860 18 H 0.072 0.928 19 C 0.163 3.837 20 N -0.737 5.737 21 C -0.224 4.224 22 H 0.071 0.929 23 C -0.019 4.019 24 N -0.938 5.938 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.430 0.570 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.378 0.622 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.281 -11.325 -9.264 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.706 3.294 4 O -0.942 6.942 5 O -0.945 6.945 6 N -0.871 5.871 7 C -0.036 4.036 8 C 0.290 3.710 9 O -0.377 6.377 10 N -0.339 5.339 11 C -0.018 4.018 12 C -0.168 4.168 13 C -0.112 4.112 14 H 0.089 0.911 15 C -0.203 4.203 16 C -0.158 4.158 17 C 0.037 3.963 18 H 0.090 0.910 19 C 0.037 3.963 20 N -0.383 5.383 21 C -0.355 4.355 22 H 0.089 0.911 23 C -0.214 4.214 24 N -0.588 5.588 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.268 0.732 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.212 0.788 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -23.637 -10.101 -8.760 27.156 hybrid contribution 1.124 -0.312 0.637 1.329 sum -22.513 -10.413 -8.123 26.101 Atomic orbital electron populations 1.21505 0.90388 1.05106 1.03588 1.30532 1.07387 1.26637 1.11788 1.04937 0.72765 0.77195 0.74459 1.93631 1.82811 1.72776 1.44965 1.93606 1.83312 1.71898 1.45644 1.55401 1.25783 1.77929 1.27950 1.21184 0.93030 0.98941 0.90460 1.20288 0.87600 0.80349 0.82781 1.90869 1.75374 1.37233 1.34265 1.48126 1.07402 1.57663 1.20703 1.21784 0.98648 0.96381 0.85016 1.21996 0.96507 1.01540 0.96807 1.21159 0.94459 0.99987 0.95645 0.91148 1.21801 1.01468 1.00472 0.96518 1.22001 1.02620 0.98945 0.92274 1.21653 0.77392 0.99799 0.97435 0.90979 1.21267 0.85535 0.96547 0.92960 1.42566 1.00543 1.54493 1.40733 1.19277 0.90343 1.17437 1.08463 0.91145 1.24698 0.95993 1.00978 0.99762 1.69664 1.02284 1.46717 1.40179 0.86124 0.78789 0.80211 0.81197 1.20561 1.22040 1.22032 0.90870 0.90867 0.89977 0.85063 0.84691 0.73162 0.87513 0.89078 0.90998 0.90041 0.90822 0.91287 0.92774 0.92261 0.93080 0.91590 0.89465 0.94100 0.94524 0.78809 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.92 37.16 0.37 -0.33 16 2 C -0.63 -3.04 6.79 37.16 0.25 -2.78 16 3 S 2.62 23.74 5.46 -107.50 -0.59 23.16 16 4 O -0.95 -12.22 18.08 -57.54 -1.04 -13.26 16 5 O -0.95 -11.40 17.49 -57.54 -1.01 -12.40 16 6 N -1.11 -10.89 5.82 -11.65 -0.07 -10.95 16 7 C 0.09 0.83 5.02 -5.19 -0.03 0.80 16 8 C 0.50 6.85 7.68 -10.98 -0.08 6.76 16 9 O -0.50 -9.14 11.13 5.55 0.06 -9.08 16 10 N -0.60 -7.62 2.97 -165.22 -0.49 -8.11 16 11 C 0.10 0.85 6.33 -3.71 -0.02 0.83 16 12 C -0.13 -1.13 5.36 -26.61 -0.14 -1.27 16 13 C -0.09 -1.04 2.68 -90.58 -0.24 -1.28 16 14 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.15 -1.52 9.19 37.16 0.34 -1.17 16 16 C -0.12 -1.83 4.40 -26.62 -0.12 -1.94 16 17 C 0.14 2.27 3.04 -67.60 -0.21 2.07 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.16 3.56 4.10 -4.04 -0.02 3.55 16 20 N -0.74 -19.26 5.28 -59.91 -0.32 -19.57 16 21 C -0.22 -6.56 9.99 -15.06 -0.15 -6.71 16 22 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 24 N -0.94 -28.85 13.06 55.49 0.72 -28.12 16 25 Si 0.91 23.33 29.55 -169.99 -5.02 18.31 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.43 4.89 7.67 -34.47 -0.26 4.62 16 35 H 0.11 0.78 7.02 -51.93 -0.36 0.42 16 36 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.42 5.96 -51.93 -0.31 0.11 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 1.54 7.19 -51.93 -0.37 1.17 16 46 H 0.04 0.97 6.45 -51.93 -0.33 0.63 16 47 H 0.04 0.88 7.04 -51.93 -0.37 0.51 16 48 H 0.38 10.09 6.78 -40.82 -0.28 9.81 16 49 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -38.82 396.52 -10.09 -48.91 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.17 Total: 7.29 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.14 Total: -2.15 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -0.15 Total: -66.76 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.98 Total: -34.74 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -0.59 Total: 23.16 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.82 -10.09 -48.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264552133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.620 kcal (2) G-P(sol) polarization free energy of solvation -38.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds