Wall clock time and date at job start Wed Apr 1 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81398 * 109.46779 * 2 1 4 4 O 1.42104 * 110.54386 * 68.37716 * 3 2 1 5 5 O 1.42101 * 110.54614 * 291.62327 * 3 2 1 6 6 N 1.65599 * 104.45010 * 180.02562 * 3 2 1 7 7 C 1.46507 * 119.99914 * 64.99748 * 6 3 2 8 8 C 1.50695 * 109.47040 * 165.00115 * 7 6 3 9 9 O 1.21287 * 120.00232 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00137 * 180.02562 * 8 7 6 11 11 C 1.46922 * 120.62683 * 5.45314 * 10 8 7 12 12 C 1.53200 * 108.77439 * 126.36899 * 11 10 8 13 13 C 1.53044 * 109.30809 * 54.63419 * 12 11 10 14 14 H 1.08999 * 109.45832 * 58.64542 * 13 12 11 15 15 C 1.52999 * 109.45485 * 178.61362 * 13 12 11 16 16 C 1.53032 * 109.53922 * 298.63324 * 13 12 11 17 17 C 1.46926 * 120.63305 * 185.43261 * 10 8 7 18 18 H 1.08997 * 109.58405 * 113.69832 * 17 10 8 19 19 C 1.53006 * 109.58589 * 353.41946 * 17 10 8 20 20 N 1.46500 * 109.46816 * 179.97438 * 19 17 10 21 21 C 1.36936 * 119.99718 * 174.98163 * 20 19 17 22 22 H 1.08002 * 119.99881 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99728 * 179.72238 * 21 20 19 24 24 N 1.31617 * 120.00245 * 0.27641 * 23 21 20 25 25 Si 1.86799 * 119.99626 * 180.27335 * 23 21 20 26 26 H 1.48504 * 109.47466 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47228 * 120.00314 * 25 23 21 28 28 H 1.48507 * 109.47296 * 239.99673 * 25 23 21 29 29 H 1.09003 * 109.47008 * 299.99606 * 1 2 3 30 30 H 1.08997 * 109.47406 * 60.00035 * 1 2 3 31 31 H 1.09008 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47008 * 240.00394 * 2 1 3 33 33 H 1.08997 * 109.47406 * 119.99965 * 2 1 3 34 34 H 0.96997 * 120.00421 * 245.00098 * 6 3 2 35 35 H 1.09004 * 109.46876 * 45.00178 * 7 6 3 36 36 H 1.08999 * 109.47348 * 285.00398 * 7 6 3 37 37 H 1.08993 * 109.59160 * 246.15712 * 11 10 8 38 38 H 1.09002 * 109.58919 * 6.44429 * 11 10 8 39 39 H 1.08998 * 109.49323 * 174.58824 * 12 11 10 40 40 H 1.08997 * 109.49570 * 294.65251 * 12 11 10 41 41 H 1.08999 * 109.47371 * 59.99927 * 15 13 12 42 42 H 1.09001 * 109.47048 * 180.02562 * 15 13 12 43 43 H 1.09004 * 109.47247 * 299.99743 * 15 13 12 44 44 H 1.08995 * 109.50191 * 301.41761 * 16 13 12 45 45 H 1.09005 * 109.49995 * 181.31635 * 16 13 12 46 46 H 1.09001 * 109.47200 * 59.95180 * 19 17 10 47 47 H 1.09000 * 109.46884 * 299.95627 * 19 17 10 48 48 H 0.96994 * 120.00101 * 354.97721 * 20 19 17 49 49 H 0.97003 * 120.00099 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 8 1.8384 2.3439 1.2370 5 8 1.8384 2.3439 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9391 1.2791 -1.0793 9 8 6.3758 1.9358 -0.1579 10 7 6.7709 0.8282 -2.0392 11 6 6.2430 0.1346 -3.2220 12 6 6.7749 0.8295 -4.4794 13 6 8.3028 0.8901 -4.4161 14 1 8.7033 -0.1205 -4.3366 15 6 8.8396 1.5526 -5.6865 16 6 8.7325 1.7062 -3.1949 17 6 8.2228 1.0213 -1.9230 18 1 8.7117 0.0542 -1.8051 19 6 8.5276 1.9014 -0.7091 20 7 9.9757 2.0917 -0.5952 21 6 10.4828 2.9318 0.3599 22 1 9.8152 3.4543 1.0290 23 6 11.8552 3.1076 0.4715 24 7 12.6688 2.4712 -0.3442 25 14 12.5473 4.2477 1.7794 26 1 11.4319 4.8378 2.5624 27 1 13.4357 3.4782 2.6871 28 1 13.3247 5.3331 1.1291 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.2987 1.8765 0.7604 35 1 4.0527 1.3773 -2.0723 36 1 4.3227 -0.1131 -1.1373 37 1 6.5706 -0.9049 -3.2126 38 1 5.1537 0.1744 -3.2131 39 1 6.4692 0.2679 -5.3622 40 1 6.3721 1.8408 -4.5341 41 1 8.4388 2.5630 -5.7666 42 1 9.9278 1.5955 -5.6419 43 1 8.5347 0.9708 -6.5564 44 1 8.3118 2.7095 -3.2614 45 1 9.8203 1.7686 -3.1634 46 1 8.1522 1.4186 0.1932 47 1 8.0426 2.8698 -0.8316 48 1 10.5753 1.6227 -1.1964 49 1 13.6278 2.5939 -0.2659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264552133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:44 Heat of formation + Delta-G solvation = -117.546614 kcal Electronic energy + Delta-G solvation = -29868.064244 eV Core-core repulsion = 25763.731117 eV Total energy + Delta-G solvation = -4104.333127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66867 -38.89636 -38.18830 -37.03858 -36.75579 -35.70626 -34.96597 -33.98435 -33.79412 -31.47041 -29.66147 -27.78622 -27.21636 -24.91097 -24.89333 -24.23363 -22.61838 -21.38798 -20.46132 -20.17518 -19.23856 -18.77446 -17.93344 -17.56999 -17.18825 -16.91035 -16.72006 -16.41035 -15.88114 -15.63428 -15.41303 -15.19585 -14.91596 -14.86066 -14.78413 -14.44794 -14.16808 -14.06401 -13.84696 -13.61543 -13.34190 -13.27957 -13.21912 -13.10787 -13.08122 -12.88295 -12.83277 -12.73710 -12.51956 -12.34525 -12.16376 -12.05232 -11.97188 -11.78725 -11.57041 -11.36752 -11.20589 -10.99300 -10.56657 -10.20877 -9.59023 -8.95574 -7.97815 -5.25057 -0.74319 1.42732 1.43646 1.54679 1.58680 1.61885 2.00380 2.54568 2.85454 3.23323 3.34977 3.37678 3.72470 3.77721 3.81423 3.91482 3.97339 4.11802 4.12766 4.18549 4.29191 4.32701 4.39059 4.44696 4.56556 4.61507 4.70206 4.71889 4.77435 4.83257 4.90539 4.92711 4.97203 5.10788 5.15386 5.17213 5.21691 5.27753 5.33574 5.41410 5.45713 5.57245 5.68310 5.88134 6.25515 6.47108 7.17754 7.31742 8.06997 8.33700 9.25848 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003048 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.786458 B = 9183.836995 C =11381.284495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.600 4.600 3 S 2.612 3.388 4 O -1.002 7.002 5 O -0.992 6.992 6 N -1.118 6.118 7 C 0.096 3.904 8 C 0.493 3.507 9 O -0.564 6.564 10 N -0.601 5.601 11 C 0.096 3.904 12 C -0.127 4.127 13 C -0.088 4.088 14 H 0.081 0.919 15 C -0.144 4.144 16 C -0.112 4.112 17 C 0.150 3.850 18 H 0.076 0.924 19 C 0.175 3.825 20 N -0.745 5.745 21 C -0.240 4.240 22 H 0.060 0.940 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.289 1.289 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.420 0.580 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.052 0.948 46 H 0.023 0.977 47 H 0.008 0.992 48 H 0.373 0.627 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.565 -14.320 -10.936 31.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.734 4.734 3 S 2.709 3.291 4 O -0.993 6.993 5 O -0.982 6.982 6 N -0.879 5.879 7 C -0.033 4.033 8 C 0.281 3.719 9 O -0.442 6.442 10 N -0.335 5.335 11 C -0.025 4.025 12 C -0.165 4.165 13 C -0.107 4.107 14 H 0.100 0.900 15 C -0.201 4.201 16 C -0.151 4.151 17 C 0.046 3.954 18 H 0.094 0.906 19 C 0.050 3.950 20 N -0.390 5.390 21 C -0.372 4.372 22 H 0.078 0.922 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.800 3.200 26 H -0.200 1.200 27 H -0.214 1.214 28 H -0.216 1.216 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.256 0.744 35 H 0.145 0.855 36 H 0.165 0.835 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.041 0.959 47 H 0.026 0.974 48 H 0.206 0.794 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.952 -13.075 -10.484 30.893 hybrid contribution 1.766 0.570 1.130 2.173 sum -24.185 -12.505 -9.354 28.789 Atomic orbital electron populations 1.21711 0.90152 1.06640 1.03615 1.30268 1.07313 1.21047 1.14810 1.04886 0.72201 0.79287 0.72717 1.93561 1.83323 1.75665 1.46714 1.93550 1.83573 1.74598 1.46430 1.55412 1.25929 1.78651 1.27914 1.21489 0.88680 1.02257 0.90882 1.21256 0.89757 0.79096 0.81820 1.90845 1.76841 1.39924 1.36624 1.48221 1.05396 1.57635 1.22229 1.22273 1.01062 0.96863 0.82306 1.22011 0.93879 1.01818 0.98749 1.21144 0.96873 0.99403 0.93280 0.90018 1.21790 1.00376 1.00597 0.97342 1.21868 1.00200 0.98638 0.94364 1.21235 0.80607 0.98452 0.95085 0.90634 1.21128 0.82594 0.96142 0.95171 1.42721 1.02391 1.53907 1.39947 1.19509 0.90761 1.17937 1.09011 0.92186 1.25489 0.96155 1.02740 1.02052 1.69799 1.02373 1.47948 1.41587 0.85105 0.77976 0.78239 0.78639 1.19974 1.21394 1.21555 0.91521 0.90593 0.87476 0.81230 0.82601 0.74369 0.85509 0.83483 0.88461 0.85879 0.87017 0.92396 0.93529 0.93963 0.90214 0.93968 0.92969 0.95929 0.97392 0.79423 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.92 71.98 0.71 -0.25 16 2 C -0.60 -3.14 6.79 71.98 0.49 -2.65 16 3 S 2.61 44.51 5.46 -56.49 -0.31 44.20 16 4 O -1.00 -26.55 18.08 -127.65 -2.31 -28.86 16 5 O -0.99 -22.76 17.49 -127.65 -2.23 -24.99 16 6 N -1.12 -20.90 5.82 -190.78 -1.11 -22.01 16 7 C 0.10 1.39 5.02 85.63 0.43 1.82 16 8 C 0.49 13.06 7.68 87.65 0.67 13.73 16 9 O -0.56 -21.66 11.13 -3.05 -0.03 -21.69 16 10 N -0.60 -14.31 2.97 -795.01 -2.36 -16.67 16 11 C 0.10 1.12 6.33 86.37 0.55 1.67 16 12 C -0.13 -1.71 5.36 30.68 0.16 -1.55 16 13 C -0.09 -1.81 2.68 -10.77 -0.03 -1.84 16 14 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 15 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 16 C -0.11 -3.56 4.40 30.67 0.13 -3.43 16 17 C 0.15 5.01 3.04 44.98 0.14 5.15 16 18 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 19 C 0.18 8.18 4.10 86.38 0.35 8.53 16 20 N -0.74 -41.22 5.28 -343.44 -1.81 -43.04 16 21 C -0.24 -14.72 9.99 84.03 0.84 -13.88 16 22 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 23 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 24 N -0.97 -60.94 13.06 21.65 0.28 -60.65 16 25 Si 0.97 49.11 29.55 68.60 2.03 51.14 16 26 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.42 9.98 7.67 -96.75 -0.74 9.23 16 35 H 0.13 1.35 7.02 -2.38 -0.02 1.33 16 36 H 0.15 0.48 8.12 -2.39 -0.02 0.46 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.48 5.96 -2.39 -0.01 0.47 16 39 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.99 7.19 -2.38 -0.02 1.97 16 46 H 0.02 1.15 6.45 -2.39 -0.02 1.14 16 47 H 0.01 0.42 7.04 -2.39 -0.02 0.40 16 48 H 0.37 21.06 6.78 -92.71 -0.63 20.43 16 49 H 0.25 15.28 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -92.97 396.52 -2.69 -95.66 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.41 Total: 25.68 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.58 Total: 1.22 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -5.01 Total: -142.37 kcal Atomic # 8 Polarization: -70.96 SS G_CDS: -4.57 Total: -75.54 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.14 kcal Atomic # 16 Polarization: 44.51 SS G_CDS: -0.31 Total: 44.20 kcal Total: -92.97 -2.69 -95.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264552133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.886 kcal (2) G-P(sol) polarization free energy of solvation -92.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds