Wall clock time and date at job start Wed Apr 1 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81399 * 109.47164 * 2 1 4 4 O 1.42104 * 110.54358 * 68.37148 * 3 2 1 5 5 O 1.42102 * 110.54342 * 291.62538 * 3 2 1 6 6 N 1.65601 * 104.45057 * 179.97438 * 3 2 1 7 7 C 1.46494 * 120.00084 * 64.99958 * 6 3 2 8 8 H 1.09003 * 109.47347 * 334.99795 * 7 6 3 9 9 C 1.52992 * 109.47252 * 94.99934 * 7 6 3 10 10 C 1.50696 * 109.47051 * 215.00294 * 7 6 3 11 11 O 1.21280 * 120.00232 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00133 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00390 * 179.97438 * 12 10 7 14 14 C 1.53000 * 109.47631 * 154.99604 * 13 12 10 15 15 C 1.52997 * 109.47060 * 59.99933 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 N 1.46496 * 109.47487 * 179.97438 * 16 15 14 18 18 C 1.36933 * 120.00258 * 274.99944 * 17 16 15 19 19 H 1.07997 * 120.00195 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00104 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00154 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47145 * 60.00236 * 22 20 18 24 24 H 1.48498 * 109.47050 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47170 * 300.00435 * 22 20 18 26 26 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 27 27 C 1.52997 * 109.47452 * 59.99536 * 26 16 15 28 28 H 1.08998 * 109.46559 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46923 * 300.00156 * 1 2 3 30 30 H 1.09003 * 109.46849 * 60.00715 * 1 2 3 31 31 H 1.08995 * 109.47323 * 239.99511 * 2 1 3 32 32 H 1.08999 * 109.46770 * 120.00038 * 2 1 3 33 33 H 0.97001 * 119.99539 * 244.99759 * 6 3 2 34 34 H 1.08999 * 109.47437 * 60.00002 * 9 7 6 35 35 H 1.09006 * 109.47427 * 179.97438 * 9 7 6 36 36 H 1.09002 * 109.47256 * 300.00079 * 9 7 6 37 37 H 0.97001 * 120.00215 * 359.97438 * 12 10 7 38 38 H 1.09004 * 109.47374 * 34.99626 * 13 12 10 39 39 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47194 * 300.00282 * 14 13 12 41 41 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 43 43 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 44 44 H 0.97007 * 119.99693 * 95.00333 * 17 16 15 45 45 H 0.96996 * 120.00649 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.46935 * 299.99411 * 26 16 15 47 47 H 1.09001 * 109.46812 * 179.97438 * 26 16 15 48 48 H 1.08993 * 109.47194 * 179.97438 * 27 26 16 49 49 H 1.09002 * 109.46695 * 59.99734 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3439 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4676 0.9669 -1.1487 8 1 3.7820 0.3008 -1.6726 9 6 4.9305 2.0727 -2.0993 10 6 5.6624 0.1828 -0.6705 11 8 5.9183 0.1295 0.5138 12 7 6.4472 -0.4583 -1.5590 13 6 7.6090 -1.2201 -1.0942 14 6 7.9464 -2.3092 -2.1146 15 6 8.2670 -1.6624 -3.4635 16 6 9.4638 -0.7222 -3.3068 17 7 9.7712 -0.1034 -4.5985 18 6 10.5701 -0.7572 -5.4981 19 1 10.9732 -1.7293 -5.2555 20 6 10.8610 -0.1711 -6.7224 21 7 10.3693 1.0134 -7.0183 22 14 11.9503 -1.0635 -7.9498 23 1 11.3268 -2.3615 -8.3127 24 1 12.1068 -0.2309 -9.1695 25 1 13.2834 -1.3072 -7.3429 26 6 9.1265 0.3669 -2.2863 27 6 8.8058 -0.2799 -0.9373 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2982 1.8767 0.7623 34 1 5.6161 2.7388 -1.5755 35 1 5.4393 1.6275 -2.9543 36 1 4.0662 2.6398 -2.4452 37 1 6.2428 -0.4155 -2.5062 38 1 7.3806 -1.6809 -0.1331 39 1 8.8106 -2.8762 -1.7685 40 1 7.0938 -2.9790 -2.2263 41 1 8.5069 -2.4382 -4.1906 42 1 7.4026 -1.0957 -3.8094 43 1 10.3282 -1.2889 -2.9609 44 1 9.4089 0.7697 -4.8166 45 1 10.5722 1.4228 -7.8739 46 1 8.2620 0.9337 -2.6322 47 1 9.9793 1.0365 -2.1743 48 1 8.5660 0.4960 -0.2103 49 1 9.6703 -0.8467 -0.5916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265735591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:00 Heat of formation + Delta-G solvation = -114.015514 kcal Electronic energy + Delta-G solvation = -29680.228879 eV Core-core repulsion = 25576.048873 eV Total energy + Delta-G solvation = -4104.180007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.46232 -38.31313 -37.43437 -36.30066 -35.70215 -34.74893 -33.61921 -32.92003 -31.04358 -30.51541 -29.83634 -27.62700 -24.70901 -24.52047 -23.64785 -22.29381 -21.29863 -20.75820 -19.76897 -18.98506 -18.57554 -17.54487 -17.06699 -16.71283 -16.45032 -15.91259 -15.54932 -15.23262 -15.07430 -14.56518 -14.44706 -14.01961 -13.89294 -13.70048 -13.51239 -13.28488 -13.14889 -12.98481 -12.72669 -12.49502 -12.44314 -12.33935 -12.31872 -12.10421 -12.03333 -11.94521 -11.89053 -11.64761 -11.10629 -11.04098 -10.90751 -10.85484 -10.47432 -10.26373 -10.23633 -10.20976 -9.81144 -9.70445 -9.56802 -9.07187 -8.89556 -6.99995 -5.80450 -3.09222 -0.12879 2.24585 2.40457 3.04384 3.40373 3.43141 3.45376 3.46211 3.78197 4.10759 4.23366 4.38536 4.49184 4.54665 4.71205 4.73868 4.86737 4.98584 5.00661 5.08813 5.10968 5.22377 5.43893 5.45582 5.48309 5.53574 5.58451 5.66370 5.72919 5.78463 5.84574 5.96148 5.99881 6.02269 6.24006 6.31196 6.38696 6.44190 6.56863 6.63002 6.63491 6.90882 7.03555 7.38919 7.65748 8.03627 8.38332 9.49369 10.07496 10.41727 11.42053 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.002307 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.558050 B =12133.460408 C =12709.774345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.636 4.636 3 S 2.613 3.387 4 O -0.955 6.955 5 O -0.949 6.949 6 N -1.100 6.100 7 C 0.134 3.866 8 H 0.106 0.894 9 C -0.171 4.171 10 C 0.509 3.491 11 O -0.536 6.536 12 N -0.712 5.712 13 C 0.148 3.852 14 C -0.126 4.126 15 C -0.136 4.136 16 C 0.178 3.822 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.122 4.122 27 C -0.125 4.125 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.426 0.574 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.404 0.596 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.383 0.617 45 H 0.256 0.744 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 -3.888 14.814 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.704 3.296 4 O -0.945 6.945 5 O -0.939 6.939 6 N -0.860 5.860 7 C 0.022 3.978 8 H 0.123 0.877 9 C -0.230 4.230 10 C 0.292 3.708 11 O -0.413 6.413 12 N -0.365 5.365 13 C 0.044 3.956 14 C -0.164 4.164 15 C -0.177 4.177 16 C 0.068 3.932 17 N -0.365 5.365 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.160 4.160 27 C -0.164 4.164 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.241 0.759 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.216 0.784 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.682 -3.290 15.395 23.674 hybrid contribution 0.843 -0.897 -1.036 1.609 sum -16.839 -4.187 14.359 22.523 Atomic orbital electron populations 1.21504 0.90285 1.05197 1.03548 1.30541 1.07462 1.26636 1.11847 1.05050 0.72795 0.77259 0.74499 1.93618 1.82852 1.72967 1.45046 1.93627 1.83170 1.71778 1.45356 1.55472 1.25743 1.77031 1.27780 1.20653 0.94317 0.95630 0.87161 0.87667 1.22317 1.03620 0.98426 0.98644 1.20577 0.84119 0.79441 0.86640 1.90688 1.72497 1.61664 1.16437 1.46167 1.28137 1.51533 1.10612 1.21018 0.84735 0.91836 0.98043 1.21857 1.01564 0.96733 0.96290 1.22289 1.00317 1.00176 0.94878 1.20218 0.94258 0.92136 0.86634 1.42421 1.59087 1.21397 1.13580 1.19180 1.21987 1.00538 0.95342 0.91317 1.24733 1.01102 0.96951 0.98129 1.69637 1.49040 1.15932 1.23504 0.86298 0.80504 0.78608 0.80936 1.21323 1.21723 1.21315 1.21771 1.01249 0.98747 0.94241 1.21871 0.97317 0.99111 0.98110 0.89921 0.90902 0.90804 0.85146 0.84680 0.73665 0.91073 0.90354 0.89537 0.75888 0.89884 0.90573 0.92164 0.91611 0.93010 0.93588 0.78362 0.93456 0.92387 0.91946 0.91940 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.92 37.16 0.37 -0.39 16 2 C -0.64 -3.52 6.68 37.16 0.25 -3.27 16 3 S 2.61 22.62 5.38 -107.50 -0.58 22.04 16 4 O -0.95 -11.39 18.08 -57.54 -1.04 -12.43 16 5 O -0.95 -10.69 17.11 -57.54 -0.98 -11.68 16 6 N -1.10 -9.58 5.15 -5.89 -0.03 -9.61 16 7 C 0.13 1.14 3.09 -69.09 -0.21 0.93 16 8 H 0.11 0.58 7.15 -51.93 -0.37 0.21 16 9 C -0.17 -1.54 9.41 37.15 0.35 -1.20 16 10 C 0.51 5.47 7.18 -10.99 -0.08 5.39 16 11 O -0.54 -7.32 15.65 5.56 0.09 -7.24 16 12 N -0.71 -7.31 4.12 -53.81 -0.22 -7.53 16 13 C 0.15 1.67 2.78 -67.93 -0.19 1.49 16 14 C -0.13 -1.43 5.61 -26.73 -0.15 -1.58 16 15 C -0.14 -2.03 5.33 -26.73 -0.14 -2.17 16 16 C 0.18 3.16 2.77 -67.93 -0.19 2.97 16 17 N -0.72 -16.95 5.12 -53.43 -0.27 -17.23 16 18 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 22 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.12 -1.84 5.23 -26.73 -0.14 -1.98 16 27 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.13 0.50 7.44 -51.93 -0.39 0.11 16 32 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.43 3.87 8.17 -34.47 -0.28 3.59 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.65 7.56 -51.93 -0.39 0.26 16 36 H 0.09 0.81 7.43 -51.93 -0.39 0.43 16 37 H 0.40 3.77 6.28 -40.82 -0.26 3.51 16 38 H 0.08 0.97 7.58 -51.93 -0.39 0.57 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.74 6.51 -51.93 -0.34 0.41 16 43 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 44 H 0.38 9.61 7.80 -40.82 -0.32 9.29 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.06 0.86 7.60 -51.93 -0.39 0.47 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -34.94 400.90 -9.96 -44.90 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.13 Total: 11.07 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.53 Total: -8.50 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.20 Total: -60.98 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.94 Total: -31.34 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 22.62 SS G_CDS: -0.58 Total: 22.04 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.94 -9.96 -44.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265735591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.115 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds