Wall clock time and date at job start Wed Apr 1 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81399 * 109.47164 * 2 1 4 4 O 1.42104 * 110.54358 * 68.37148 * 3 2 1 5 5 O 1.42102 * 110.54342 * 291.62538 * 3 2 1 6 6 N 1.65601 * 104.45057 * 179.97438 * 3 2 1 7 7 C 1.46494 * 120.00084 * 64.99958 * 6 3 2 8 8 H 1.09003 * 109.47347 * 334.99795 * 7 6 3 9 9 C 1.52992 * 109.47252 * 94.99934 * 7 6 3 10 10 C 1.50696 * 109.47051 * 215.00294 * 7 6 3 11 11 O 1.21280 * 120.00232 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00133 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00390 * 179.97438 * 12 10 7 14 14 C 1.53000 * 109.47631 * 154.99604 * 13 12 10 15 15 C 1.52997 * 109.47060 * 59.99933 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 N 1.46496 * 109.47487 * 179.97438 * 16 15 14 18 18 C 1.36933 * 120.00258 * 274.99944 * 17 16 15 19 19 H 1.07997 * 120.00195 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00104 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00154 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47145 * 60.00236 * 22 20 18 24 24 H 1.48498 * 109.47050 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47170 * 300.00435 * 22 20 18 26 26 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 27 27 C 1.52997 * 109.47452 * 59.99536 * 26 16 15 28 28 H 1.08998 * 109.46559 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46923 * 300.00156 * 1 2 3 30 30 H 1.09003 * 109.46849 * 60.00715 * 1 2 3 31 31 H 1.08995 * 109.47323 * 239.99511 * 2 1 3 32 32 H 1.08999 * 109.46770 * 120.00038 * 2 1 3 33 33 H 0.97001 * 119.99539 * 244.99759 * 6 3 2 34 34 H 1.08999 * 109.47437 * 60.00002 * 9 7 6 35 35 H 1.09006 * 109.47427 * 179.97438 * 9 7 6 36 36 H 1.09002 * 109.47256 * 300.00079 * 9 7 6 37 37 H 0.97001 * 120.00215 * 359.97438 * 12 10 7 38 38 H 1.09004 * 109.47374 * 34.99626 * 13 12 10 39 39 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47194 * 300.00282 * 14 13 12 41 41 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 42 42 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 43 43 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 44 44 H 0.97007 * 119.99693 * 95.00333 * 17 16 15 45 45 H 0.96996 * 120.00649 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.46935 * 299.99411 * 26 16 15 47 47 H 1.09001 * 109.46812 * 179.97438 * 26 16 15 48 48 H 1.08993 * 109.47194 * 179.97438 * 27 26 16 49 49 H 1.09002 * 109.46695 * 59.99734 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3439 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4676 0.9669 -1.1487 8 1 3.7820 0.3008 -1.6726 9 6 4.9305 2.0727 -2.0993 10 6 5.6624 0.1828 -0.6705 11 8 5.9183 0.1295 0.5138 12 7 6.4472 -0.4583 -1.5590 13 6 7.6090 -1.2201 -1.0942 14 6 7.9464 -2.3092 -2.1146 15 6 8.2670 -1.6624 -3.4635 16 6 9.4638 -0.7222 -3.3068 17 7 9.7712 -0.1034 -4.5985 18 6 10.5701 -0.7572 -5.4981 19 1 10.9732 -1.7293 -5.2555 20 6 10.8610 -0.1711 -6.7224 21 7 10.3693 1.0134 -7.0183 22 14 11.9503 -1.0635 -7.9498 23 1 11.3268 -2.3615 -8.3127 24 1 12.1068 -0.2309 -9.1695 25 1 13.2834 -1.3072 -7.3429 26 6 9.1265 0.3669 -2.2863 27 6 8.8058 -0.2799 -0.9373 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2982 1.8767 0.7623 34 1 5.6161 2.7388 -1.5755 35 1 5.4393 1.6275 -2.9543 36 1 4.0662 2.6398 -2.4452 37 1 6.2428 -0.4155 -2.5062 38 1 7.3806 -1.6809 -0.1331 39 1 8.8106 -2.8762 -1.7685 40 1 7.0938 -2.9790 -2.2263 41 1 8.5069 -2.4382 -4.1906 42 1 7.4026 -1.0957 -3.8094 43 1 10.3282 -1.2889 -2.9609 44 1 9.4089 0.7697 -4.8166 45 1 10.5722 1.4228 -7.8739 46 1 8.2620 0.9337 -2.6322 47 1 9.9793 1.0365 -2.1743 48 1 8.5660 0.4960 -0.2103 49 1 9.6703 -0.8467 -0.5916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265735591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:59 Heat of formation + Delta-G solvation = -141.313186 kcal Electronic energy + Delta-G solvation = -29681.412595 eV Core-core repulsion = 25576.048873 eV Total energy + Delta-G solvation = -4105.363723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.37877 -39.41761 -38.22322 -37.08012 -36.56511 -36.14115 -34.32969 -34.04282 -32.53372 -31.65871 -30.76457 -29.03445 -25.80446 -25.18813 -24.96741 -23.44985 -22.48058 -21.76277 -20.44234 -20.13126 -19.31727 -19.04303 -18.20455 -17.37269 -17.27148 -16.90876 -16.67042 -16.36414 -15.96433 -15.80419 -15.31426 -15.13444 -15.10070 -14.80344 -14.52615 -14.25604 -14.07250 -13.88470 -13.58041 -13.47253 -13.40567 -13.25796 -13.14865 -13.08696 -12.99344 -12.82931 -12.76303 -12.70658 -12.68274 -12.38659 -12.16959 -12.03645 -11.91963 -11.70070 -11.57026 -11.43649 -10.98774 -10.95041 -10.79720 -10.47764 -9.98245 -8.93903 -7.90068 -5.17026 -0.77357 1.49308 1.51037 1.54864 1.57042 1.59700 2.24340 2.59211 2.79679 3.18895 3.43341 3.51369 3.70933 3.78315 3.81334 3.90425 3.92969 3.97970 4.04027 4.25402 4.33255 4.38230 4.39687 4.44885 4.64838 4.69182 4.71453 4.75050 4.80618 4.84262 4.86439 4.96637 5.06714 5.12044 5.15204 5.19230 5.27587 5.31139 5.37059 5.52027 5.60347 5.62320 5.72522 5.91459 6.32813 6.56321 7.20717 7.38885 8.17729 8.39230 9.33158 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.002307 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.558050 B =12133.460408 C =12709.774345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.614 4.614 3 S 2.615 3.385 4 O -0.994 6.994 5 O -0.982 6.982 6 N -1.103 6.103 7 C 0.133 3.867 8 H 0.142 0.858 9 C -0.172 4.172 10 C 0.512 3.488 11 O -0.565 6.565 12 N -0.707 5.707 13 C 0.153 3.847 14 C -0.113 4.113 15 C -0.126 4.126 16 C 0.172 3.828 17 N -0.738 5.738 18 C -0.233 4.233 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.966 3.034 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.282 1.282 26 C -0.111 4.111 27 C -0.117 4.117 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.423 0.577 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.411 0.589 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.058 0.942 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.464 -6.395 15.415 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.747 4.747 3 S 2.711 3.289 4 O -0.985 6.985 5 O -0.972 6.972 6 N -0.861 5.861 7 C 0.022 3.978 8 H 0.160 0.840 9 C -0.232 4.232 10 C 0.297 3.703 11 O -0.443 6.443 12 N -0.360 5.360 13 C 0.048 3.952 14 C -0.151 4.151 15 C -0.166 4.166 16 C 0.064 3.936 17 N -0.377 5.377 18 C -0.365 4.365 19 H 0.092 0.908 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.208 1.208 26 C -0.149 4.149 27 C -0.156 4.156 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.712 -5.799 16.025 25.310 hybrid contribution 1.151 -0.160 -1.143 1.630 sum -17.561 -5.960 14.882 23.778 Atomic orbital electron populations 1.21691 0.89875 1.06549 1.03790 1.30358 1.07719 1.22641 1.14014 1.04810 0.72426 0.78648 0.72998 1.93562 1.83339 1.75182 1.46419 1.93582 1.83501 1.73933 1.46151 1.55395 1.25702 1.77302 1.27742 1.20792 0.94316 0.95666 0.87035 0.84039 1.22326 1.03290 0.98564 0.98972 1.20858 0.84325 0.78985 0.86139 1.90681 1.73263 1.62694 1.17704 1.46124 1.27697 1.51251 1.10932 1.20936 0.84356 0.91452 0.98430 1.21759 1.02911 0.96741 0.93695 1.22059 0.98857 0.98957 0.96727 1.20468 0.95205 0.93124 0.84798 1.42638 1.58862 1.21102 1.15084 1.19548 1.20945 1.00409 0.95573 0.90827 1.25469 1.03284 0.97926 1.00200 1.69789 1.51095 1.17550 1.23631 0.85319 0.79034 0.77605 0.78458 1.20353 1.22580 1.20806 1.21625 1.00537 0.97751 0.95008 1.21807 0.98497 0.99275 0.96066 0.87891 0.91024 0.90546 0.82520 0.83088 0.74049 0.92231 0.89580 0.89957 0.75160 0.89143 0.89830 0.89723 0.93578 0.92382 0.94555 0.79710 0.94236 0.92198 0.93827 0.92360 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.92 71.98 0.71 -0.53 16 2 C -0.61 -4.92 6.68 71.98 0.48 -4.44 16 3 S 2.62 42.88 5.38 -56.49 -0.30 42.58 16 4 O -0.99 -23.90 18.08 -127.65 -2.31 -26.20 16 5 O -0.98 -21.59 17.11 -127.65 -2.18 -23.78 16 6 N -1.10 -18.05 5.15 -172.55 -0.89 -18.94 16 7 C 0.13 2.01 3.09 44.24 0.14 2.14 16 8 H 0.14 1.06 7.15 -2.39 -0.02 1.04 16 9 C -0.17 -2.95 9.41 71.98 0.68 -2.27 16 10 C 0.51 9.87 7.18 87.66 0.63 10.50 16 11 O -0.56 -14.39 15.65 -3.03 -0.05 -14.44 16 12 N -0.71 -12.65 4.12 -442.54 -1.83 -14.48 16 13 C 0.15 3.03 2.78 44.99 0.13 3.15 16 14 C -0.11 -2.19 5.61 30.59 0.17 -2.02 16 15 C -0.13 -3.52 5.33 30.59 0.16 -3.35 16 16 C 0.17 5.99 2.77 44.99 0.12 6.12 16 17 N -0.74 -34.67 5.12 -322.94 -1.65 -36.33 16 18 C -0.23 -12.31 9.93 84.03 0.83 -11.48 16 19 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 20 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 22 Si 0.97 45.00 29.55 68.60 2.03 47.02 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 C -0.11 -3.28 5.23 30.60 0.16 -3.12 16 27 C -0.12 -2.76 5.60 30.59 0.17 -2.59 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.16 0.49 7.44 -2.39 -0.02 0.47 16 32 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.42 7.57 8.17 -96.75 -0.79 6.78 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.31 7.56 -2.38 -0.02 1.29 16 36 H 0.08 1.50 7.43 -2.39 -0.02 1.48 16 37 H 0.41 6.48 6.28 -92.71 -0.58 5.89 16 38 H 0.09 1.79 7.58 -2.39 -0.02 1.77 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.55 6.51 -2.39 -0.02 1.53 16 43 H 0.04 1.34 8.08 -2.39 -0.02 1.32 16 44 H 0.37 18.96 7.80 -92.70 -0.72 18.24 16 45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.06 1.74 7.60 -2.39 -0.02 1.72 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -76.39 400.90 -3.17 -79.56 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -1.12 Total: 34.26 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 4.86 Total: -11.70 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -4.09 Total: -127.30 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -4.54 Total: -64.42 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 42.88 SS G_CDS: -0.30 Total: 42.58 kcal Total: -76.39 -3.17 -79.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265735591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.753 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds