Wall clock time and date at job start Wed Apr 1 2020 05:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81395 * 109.46927 * 2 1 4 4 O 1.42103 * 110.54730 * 68.37169 * 3 2 1 5 5 O 1.42101 * 110.54559 * 291.61839 * 3 2 1 6 6 N 1.65604 * 104.44879 * 179.97438 * 3 2 1 7 7 C 1.46503 * 119.99884 * 65.00266 * 6 3 2 8 8 H 1.09005 * 109.47159 * 334.99623 * 7 6 3 9 9 C 1.52999 * 109.47663 * 94.99798 * 7 6 3 10 10 C 1.50699 * 109.46838 * 215.00218 * 7 6 3 11 11 O 1.21277 * 120.00498 * 351.49512 * 10 7 6 12 12 N 1.34779 * 119.99656 * 171.50408 * 10 7 6 13 13 C 1.46915 * 120.63534 * 356.96776 * 12 10 7 14 14 C 1.53193 * 108.78007 * 233.59061 * 13 12 10 15 15 C 1.53034 * 109.31254 * 305.36816 * 14 13 12 16 16 C 1.53043 * 109.54264 * 61.36272 * 15 14 13 17 17 H 1.08988 * 109.49631 * 58.58498 * 16 15 14 18 18 N 1.46497 * 109.50006 * 178.68664 * 16 15 14 19 19 C 1.46503 * 119.99949 * 59.99500 * 18 16 15 20 20 C 1.36936 * 119.99916 * 239.99756 * 18 16 15 21 21 H 1.07996 * 119.99833 * 7.70182 * 20 18 16 22 22 C 1.38812 * 119.99733 * 187.69689 * 20 18 16 23 23 N 1.31621 * 120.00298 * 24.89780 * 22 20 18 24 24 Si 1.86802 * 119.99713 * 204.88948 * 22 20 18 25 25 H 1.48502 * 109.47006 * 95.00489 * 24 22 20 26 26 H 1.48497 * 109.47223 * 215.00258 * 24 22 20 27 27 H 1.48498 * 109.47227 * 335.00356 * 24 22 20 28 28 C 1.46934 * 120.62649 * 176.95135 * 12 10 7 29 29 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47586 * 300.00162 * 1 2 3 31 31 H 1.09006 * 109.46869 * 60.00260 * 1 2 3 32 32 H 1.09000 * 109.47586 * 239.99838 * 2 1 3 33 33 H 1.09006 * 109.46869 * 119.99740 * 2 1 3 34 34 H 0.96996 * 120.00487 * 244.99470 * 6 3 2 35 35 H 1.09002 * 109.47129 * 305.26198 * 9 7 6 36 36 H 1.08997 * 109.47114 * 65.25660 * 9 7 6 37 37 H 1.08995 * 109.47342 * 185.26100 * 9 7 6 38 38 H 1.09001 * 109.58914 * 113.79899 * 13 12 10 39 39 H 1.09004 * 109.70386 * 353.44928 * 13 12 10 40 40 H 1.08999 * 109.50008 * 185.40925 * 14 13 12 41 41 H 1.09010 * 109.49617 * 65.31292 * 14 13 12 42 42 H 1.09001 * 109.46155 * 181.38229 * 15 14 13 43 43 H 1.09000 * 109.45793 * 301.34047 * 15 14 13 44 44 H 1.09000 * 109.46904 * 95.07596 * 19 18 16 45 45 H 1.08998 * 109.47157 * 215.06649 * 19 18 16 46 46 H 1.08996 * 109.47276 * 335.07267 * 19 18 16 47 47 H 0.96996 * 120.00055 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58545 * 246.19602 * 28 12 10 49 49 H 1.09004 * 109.58874 * 6.62496 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9669 -1.1488 8 1 3.7819 0.3009 -1.6727 9 6 4.9304 2.0728 -2.0995 10 6 5.6624 0.1829 -0.6706 11 8 6.0091 0.2531 0.4894 12 7 6.3457 -0.5964 -1.5323 13 6 5.8993 -0.7437 -2.9242 14 6 5.7555 -2.2356 -3.2407 15 6 7.0716 -2.9494 -2.9239 16 6 7.3893 -2.8001 -1.4342 17 1 6.5744 -3.2198 -0.8447 18 7 8.6330 -3.5101 -1.1259 19 6 9.8798 -3.1274 -1.7934 20 6 8.6303 -4.5315 -0.2138 21 1 7.6955 -4.8966 0.1851 22 6 9.8290 -5.0976 0.1978 23 7 10.9432 -4.3999 0.1321 24 14 9.8608 -6.8496 0.8451 25 1 10.2101 -7.7790 -0.2592 26 1 10.8746 -6.9602 1.9244 27 1 8.5230 -7.2024 1.3845 28 6 7.5516 -1.3144 -1.0974 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.2982 1.8767 0.7621 35 1 4.0796 2.6974 -2.3718 36 1 5.6862 2.6836 -1.6058 37 1 5.3550 1.6253 -2.9981 38 1 6.6352 -0.2975 -3.5931 39 1 4.9376 -0.2478 -3.0561 40 1 5.5180 -2.3623 -4.2969 41 1 4.9559 -2.6609 -2.6340 42 1 6.9799 -4.0069 -3.1713 43 1 7.8753 -2.5072 -3.5127 44 1 10.4294 -2.4281 -1.1632 45 1 10.4872 -4.0158 -1.9656 46 1 9.6503 -2.6534 -2.7477 47 1 11.7807 -4.7954 0.4201 48 1 8.4223 -0.9148 -1.6173 49 1 7.6796 -1.1957 -0.0214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266099900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:48 Heat of formation + Delta-G solvation = -77.254611 kcal Electronic energy + Delta-G solvation = -30315.570727 eV Core-core repulsion = 26212.984793 eV Total energy + Delta-G solvation = -4102.585935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.39677 -37.82375 -37.37656 -36.25588 -35.65012 -35.23063 -33.54635 -32.55523 -31.40752 -30.31034 -28.64211 -26.10650 -25.82484 -24.46578 -23.98888 -23.26175 -21.74477 -19.91067 -19.72370 -18.89933 -18.29266 -17.05592 -16.84717 -16.68184 -16.51366 -15.88028 -15.49968 -14.92368 -14.84628 -14.45994 -14.33180 -14.06067 -13.82664 -13.66770 -13.51290 -13.37161 -12.92289 -12.81788 -12.72372 -12.57904 -12.39035 -12.36884 -12.27566 -12.09829 -12.04807 -11.94601 -11.81318 -11.23307 -11.15466 -11.03572 -10.87818 -10.70001 -10.47552 -10.40845 -10.23987 -10.09934 -9.87859 -9.83210 -9.52249 -8.63806 -8.38169 -6.97065 -5.81814 -3.11022 -0.06830 2.29664 2.57513 3.02474 3.37286 3.44696 3.46079 3.46677 3.84221 4.14846 4.24296 4.35740 4.45209 4.47054 4.75238 4.76749 4.80405 4.93992 5.00909 5.15459 5.17064 5.31376 5.32259 5.40985 5.45335 5.49658 5.50168 5.57472 5.69327 5.79239 5.86661 5.94186 6.00542 6.12172 6.26213 6.38474 6.52752 6.68042 6.70968 6.82171 6.86250 7.36939 7.47848 7.60214 7.79236 8.15945 8.28109 9.15889 9.81861 10.25685 11.25411 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.002709 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.781206 B =10335.171405 C =10826.768847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.613 3.387 4 O -0.954 6.954 5 O -0.953 6.953 6 N -1.101 6.101 7 C 0.135 3.865 8 H 0.102 0.898 9 C -0.170 4.170 10 C 0.505 3.495 11 O -0.530 6.530 12 N -0.601 5.601 13 C 0.100 3.900 14 C -0.133 4.133 15 C -0.134 4.134 16 C 0.171 3.829 17 H 0.064 0.936 18 N -0.594 5.594 19 C 0.158 3.842 20 C -0.257 4.257 21 H 0.074 0.926 22 C 0.002 3.998 23 N -0.900 5.900 24 Si 0.897 3.103 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.280 1.280 28 C 0.096 3.904 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.428 0.572 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.001 0.999 47 H 0.253 0.747 48 H 0.064 0.936 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.686 10.429 -8.468 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.704 3.296 4 O -0.944 6.944 5 O -0.943 6.943 6 N -0.861 5.861 7 C 0.023 3.977 8 H 0.120 0.880 9 C -0.229 4.229 10 C 0.290 3.710 11 O -0.406 6.406 12 N -0.335 5.335 13 C -0.023 4.023 14 C -0.171 4.171 15 C -0.174 4.174 16 C 0.061 3.939 17 H 0.083 0.917 18 N -0.315 5.315 19 C 0.014 3.986 20 C -0.386 4.386 21 H 0.092 0.908 22 C -0.197 4.197 23 N -0.545 5.545 24 Si 0.727 3.273 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.028 4.028 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.265 0.735 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.039 0.961 45 H 0.074 0.926 46 H 0.019 0.981 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.864 11.139 -7.919 22.492 hybrid contribution 0.669 -1.687 0.655 1.929 sum -17.195 9.452 -7.264 20.923 Atomic orbital electron populations 1.21500 0.90280 1.05248 1.03434 1.30542 1.07433 1.26477 1.12067 1.05022 0.72764 0.77307 0.74467 1.93620 1.82836 1.73026 1.44952 1.93604 1.83288 1.71959 1.45446 1.55489 1.25714 1.77042 1.27904 1.20642 0.94571 0.95372 0.87105 0.87993 1.22354 1.03518 0.98440 0.98634 1.20531 0.84486 0.79891 0.86066 1.90715 1.68179 1.64417 1.17308 1.48259 1.28269 1.46224 1.10707 1.21929 1.00084 0.97691 0.82610 1.21932 0.99439 0.94426 1.01338 1.22107 0.95482 1.00575 0.99225 1.20562 0.90531 0.89588 0.93242 0.91732 1.44077 1.03080 1.37600 1.46769 1.20882 0.87159 0.99249 0.91327 1.19276 0.92827 1.07506 1.19007 0.90796 1.24735 0.95821 0.98937 1.00160 1.70213 0.98942 1.34459 1.50907 0.86333 0.77293 0.85756 0.77891 1.21579 1.21944 1.20528 1.22631 0.84486 0.93523 1.02130 0.89850 0.90909 0.90905 0.85124 0.84494 0.73508 0.89633 0.91227 0.90459 0.90893 0.90126 0.90947 0.91725 0.91492 0.92116 0.96066 0.92595 0.98057 0.93698 0.91788 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.92 37.16 0.37 -0.51 16 2 C -0.64 -4.28 6.68 37.16 0.25 -4.03 16 3 S 2.61 24.69 5.38 -107.50 -0.58 24.11 16 4 O -0.95 -12.22 18.08 -57.54 -1.04 -13.26 16 5 O -0.95 -10.75 17.05 -57.54 -0.98 -11.73 16 6 N -1.10 -11.05 5.21 -5.88 -0.03 -11.08 16 7 C 0.13 1.32 2.23 -69.08 -0.15 1.17 16 8 H 0.10 0.69 6.10 -51.93 -0.32 0.37 16 9 C -0.17 -1.47 9.18 37.16 0.34 -1.13 16 10 C 0.51 6.95 7.05 -10.98 -0.08 6.87 16 11 O -0.53 -9.44 15.37 5.56 0.09 -9.35 16 12 N -0.60 -8.09 2.97 -172.76 -0.51 -8.60 16 13 C 0.10 0.96 5.13 -3.72 -0.02 0.94 16 14 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 15 C -0.13 -1.99 5.13 -26.69 -0.14 -2.13 16 16 C 0.17 3.21 2.74 -67.81 -0.19 3.02 16 17 H 0.06 1.29 7.79 -51.94 -0.40 0.88 16 18 N -0.59 -14.09 2.82 -173.35 -0.49 -14.57 16 19 C 0.16 3.70 7.98 59.85 0.48 4.18 16 20 C -0.26 -6.89 9.69 -15.06 -0.15 -7.04 16 21 H 0.07 1.95 7.78 -52.49 -0.41 1.55 16 22 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 23 N -0.90 -25.78 10.62 55.49 0.59 -25.19 16 24 Si 0.90 21.54 29.62 -169.99 -5.04 16.51 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 28 C 0.10 1.69 5.80 -3.70 -0.02 1.66 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.13 0.65 7.44 -51.92 -0.39 0.26 16 33 H 0.14 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.43 4.59 8.08 -34.48 -0.28 4.31 16 35 H 0.08 0.73 7.36 -51.93 -0.38 0.35 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.53 6.05 -51.93 -0.31 0.22 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.53 4.89 -51.93 -0.25 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.90 6.72 -51.93 -0.35 0.55 16 44 H 0.02 0.54 7.74 -51.93 -0.40 0.14 16 45 H 0.06 1.44 6.61 -51.93 -0.34 1.10 16 46 H 0.00 0.02 6.46 -51.93 -0.34 -0.32 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.06 1.14 7.51 -51.93 -0.39 0.75 16 49 H 0.09 1.94 7.00 -51.93 -0.36 1.58 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -35.19 390.12 -9.54 -44.73 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.87 Total: 1.16 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 0.45 Total: 1.42 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.44 Total: -59.45 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.94 Total: -34.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.04 Total: 16.51 kcal Atomic # 16 Polarization: 24.69 SS G_CDS: -0.58 Total: 24.11 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.19 -9.54 -44.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266099900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.526 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds