Wall clock time and date at job start Wed Apr 1 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81395 * 109.46927 * 2 1 4 4 O 1.42103 * 110.54730 * 68.37169 * 3 2 1 5 5 O 1.42101 * 110.54559 * 291.61839 * 3 2 1 6 6 N 1.65604 * 104.44879 * 179.97438 * 3 2 1 7 7 C 1.46503 * 119.99884 * 65.00266 * 6 3 2 8 8 H 1.09005 * 109.47159 * 334.99623 * 7 6 3 9 9 C 1.52999 * 109.47663 * 94.99798 * 7 6 3 10 10 C 1.50699 * 109.46838 * 215.00218 * 7 6 3 11 11 O 1.21277 * 120.00498 * 351.49512 * 10 7 6 12 12 N 1.34779 * 119.99656 * 171.50408 * 10 7 6 13 13 C 1.46915 * 120.63534 * 356.96776 * 12 10 7 14 14 C 1.53193 * 108.78007 * 233.59061 * 13 12 10 15 15 C 1.53034 * 109.31254 * 305.36816 * 14 13 12 16 16 C 1.53043 * 109.54264 * 61.36272 * 15 14 13 17 17 H 1.08988 * 109.49631 * 58.58498 * 16 15 14 18 18 N 1.46497 * 109.50006 * 178.68664 * 16 15 14 19 19 C 1.46503 * 119.99949 * 59.99500 * 18 16 15 20 20 C 1.36936 * 119.99916 * 239.99756 * 18 16 15 21 21 H 1.07996 * 119.99833 * 7.70182 * 20 18 16 22 22 C 1.38812 * 119.99733 * 187.69689 * 20 18 16 23 23 N 1.31621 * 120.00298 * 24.89780 * 22 20 18 24 24 Si 1.86802 * 119.99713 * 204.88948 * 22 20 18 25 25 H 1.48502 * 109.47006 * 95.00489 * 24 22 20 26 26 H 1.48497 * 109.47223 * 215.00258 * 24 22 20 27 27 H 1.48498 * 109.47227 * 335.00356 * 24 22 20 28 28 C 1.46934 * 120.62649 * 176.95135 * 12 10 7 29 29 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47586 * 300.00162 * 1 2 3 31 31 H 1.09006 * 109.46869 * 60.00260 * 1 2 3 32 32 H 1.09000 * 109.47586 * 239.99838 * 2 1 3 33 33 H 1.09006 * 109.46869 * 119.99740 * 2 1 3 34 34 H 0.96996 * 120.00487 * 244.99470 * 6 3 2 35 35 H 1.09002 * 109.47129 * 305.26198 * 9 7 6 36 36 H 1.08997 * 109.47114 * 65.25660 * 9 7 6 37 37 H 1.08995 * 109.47342 * 185.26100 * 9 7 6 38 38 H 1.09001 * 109.58914 * 113.79899 * 13 12 10 39 39 H 1.09004 * 109.70386 * 353.44928 * 13 12 10 40 40 H 1.08999 * 109.50008 * 185.40925 * 14 13 12 41 41 H 1.09010 * 109.49617 * 65.31292 * 14 13 12 42 42 H 1.09001 * 109.46155 * 181.38229 * 15 14 13 43 43 H 1.09000 * 109.45793 * 301.34047 * 15 14 13 44 44 H 1.09000 * 109.46904 * 95.07596 * 19 18 16 45 45 H 1.08998 * 109.47157 * 215.06649 * 19 18 16 46 46 H 1.08996 * 109.47276 * 335.07267 * 19 18 16 47 47 H 0.96996 * 120.00055 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58545 * 246.19602 * 28 12 10 49 49 H 1.09004 * 109.58874 * 6.62496 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9669 -1.1488 8 1 3.7819 0.3009 -1.6727 9 6 4.9304 2.0728 -2.0995 10 6 5.6624 0.1829 -0.6706 11 8 6.0091 0.2531 0.4894 12 7 6.3457 -0.5964 -1.5323 13 6 5.8993 -0.7437 -2.9242 14 6 5.7555 -2.2356 -3.2407 15 6 7.0716 -2.9494 -2.9239 16 6 7.3893 -2.8001 -1.4342 17 1 6.5744 -3.2198 -0.8447 18 7 8.6330 -3.5101 -1.1259 19 6 9.8798 -3.1274 -1.7934 20 6 8.6303 -4.5315 -0.2138 21 1 7.6955 -4.8966 0.1851 22 6 9.8290 -5.0976 0.1978 23 7 10.9432 -4.3999 0.1321 24 14 9.8608 -6.8496 0.8451 25 1 10.2101 -7.7790 -0.2592 26 1 10.8746 -6.9602 1.9244 27 1 8.5230 -7.2024 1.3845 28 6 7.5516 -1.3144 -1.0974 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.2982 1.8767 0.7621 35 1 4.0796 2.6974 -2.3718 36 1 5.6862 2.6836 -1.6058 37 1 5.3550 1.6253 -2.9981 38 1 6.6352 -0.2975 -3.5931 39 1 4.9376 -0.2478 -3.0561 40 1 5.5180 -2.3623 -4.2969 41 1 4.9559 -2.6609 -2.6340 42 1 6.9799 -4.0069 -3.1713 43 1 7.8753 -2.5072 -3.5127 44 1 10.4294 -2.4281 -1.1632 45 1 10.4872 -4.0158 -1.9656 46 1 9.6503 -2.6534 -2.7477 47 1 11.7807 -4.7954 0.4201 48 1 8.4223 -0.9148 -1.6173 49 1 7.6796 -1.1957 -0.0214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266099900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:47 Heat of formation + Delta-G solvation = -104.566371 kcal Electronic energy + Delta-G solvation = -30316.755054 eV Core-core repulsion = 26212.984793 eV Total energy + Delta-G solvation = -4103.770261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.48935 -39.10742 -38.22773 -37.08576 -36.84121 -36.51143 -34.05101 -34.01586 -32.81811 -31.34899 -29.98325 -28.08365 -26.87635 -25.39068 -24.96394 -24.40451 -23.00825 -21.15851 -20.46748 -20.07268 -19.16860 -18.76461 -17.92152 -17.64466 -17.35843 -16.97473 -16.67530 -16.31469 -15.94007 -15.54426 -15.35064 -15.21744 -15.11174 -14.69834 -14.49422 -14.38469 -14.13737 -13.84942 -13.75591 -13.59491 -13.44724 -13.37246 -13.24766 -13.13183 -12.99563 -12.86656 -12.78773 -12.69355 -12.42089 -12.38668 -12.17924 -12.11516 -11.99687 -11.73834 -11.67818 -11.58628 -11.39614 -10.90959 -10.56046 -10.50675 -9.70619 -8.90274 -7.89204 -5.19449 -0.77941 1.44862 1.46027 1.49240 1.55286 1.56147 1.99820 2.51241 2.76000 3.17115 3.22713 3.30574 3.60152 3.67887 3.70875 3.90460 3.99109 4.04057 4.08246 4.14738 4.23674 4.30381 4.39525 4.40935 4.62101 4.70322 4.71722 4.79567 4.84535 4.85549 4.89462 4.95813 4.97002 5.07963 5.12751 5.21742 5.28959 5.31561 5.46567 5.48832 5.57618 5.62391 5.72777 5.85827 6.25784 6.43183 7.08700 7.12182 7.87368 8.25652 9.16526 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.002709 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.781206 B =10335.171405 C =10826.768847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.620 4.620 3 S 2.619 3.381 4 O -0.995 6.995 5 O -0.972 6.972 6 N -1.108 6.108 7 C 0.137 3.863 8 H 0.144 0.856 9 C -0.170 4.170 10 C 0.502 3.498 11 O -0.581 6.581 12 N -0.598 5.598 13 C 0.091 3.909 14 C -0.124 4.124 15 C -0.125 4.125 16 C 0.167 3.833 17 H 0.048 0.952 18 N -0.611 5.611 19 C 0.176 3.824 20 C -0.263 4.263 21 H 0.072 0.928 22 C -0.053 4.053 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.285 1.285 26 H -0.299 1.299 27 H -0.271 1.271 28 C 0.112 3.888 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.422 0.578 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.063 0.937 44 H -0.010 1.010 45 H 0.027 0.973 46 H 0.039 0.961 47 H 0.248 0.752 48 H 0.061 0.939 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.395 10.057 -11.260 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.753 4.753 3 S 2.715 3.285 4 O -0.986 6.986 5 O -0.962 6.962 6 N -0.866 5.866 7 C 0.026 3.974 8 H 0.161 0.839 9 C -0.229 4.229 10 C 0.289 3.711 11 O -0.460 6.460 12 N -0.331 5.331 13 C -0.030 4.030 14 C -0.163 4.163 15 C -0.164 4.164 16 C 0.059 3.941 17 H 0.066 0.934 18 N -0.333 5.333 19 C 0.032 3.968 20 C -0.393 4.393 21 H 0.090 0.910 22 C -0.248 4.248 23 N -0.580 5.580 24 Si 0.789 3.211 25 H -0.212 1.212 26 H -0.227 1.227 27 H -0.195 1.195 28 C -0.013 4.013 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.177 0.823 33 H 0.160 0.840 34 H 0.258 0.742 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.008 0.992 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.622 10.815 -10.767 25.655 hybrid contribution 1.434 -1.555 1.522 2.606 sum -19.188 9.260 -9.245 23.225 Atomic orbital electron populations 1.21683 0.89577 1.06503 1.03957 1.30409 1.08013 1.23045 1.13822 1.04729 0.72181 0.78424 0.73163 1.93565 1.83296 1.75130 1.46605 1.93571 1.83373 1.73598 1.45646 1.55522 1.25907 1.77247 1.27964 1.20846 0.93432 0.95865 0.87232 0.83922 1.22406 1.03479 0.98025 0.99014 1.21299 0.85091 0.79441 0.85298 1.90700 1.69647 1.65951 1.19714 1.48256 1.26798 1.45465 1.12573 1.22365 1.02734 0.97841 0.80056 1.21931 0.96479 0.94089 1.03789 1.21946 0.98419 1.00768 0.95268 1.20782 0.87856 0.89430 0.96029 0.93406 1.44312 1.04710 1.37983 1.46315 1.20574 0.86671 0.97303 0.92295 1.19578 0.92660 1.08239 1.18828 0.91033 1.25459 0.95689 1.02154 1.01526 1.70356 0.99211 1.35665 1.52815 0.85349 0.77246 0.81465 0.77072 1.21192 1.22656 1.19531 1.22022 0.86556 0.93419 0.99349 0.88133 0.91193 0.89901 0.82293 0.83958 0.74234 0.89129 0.92597 0.87956 0.89066 0.85926 0.87121 0.91317 0.92630 0.91848 0.99186 0.95471 0.94283 0.94277 0.92118 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.92 71.98 0.71 -0.72 16 2 C -0.62 -6.36 6.68 71.98 0.48 -5.87 16 3 S 2.62 45.44 5.38 -56.49 -0.30 45.13 16 4 O -1.00 -25.52 18.08 -127.65 -2.31 -27.82 16 5 O -0.97 -19.77 17.05 -127.65 -2.18 -21.95 16 6 N -1.11 -20.87 5.21 -172.51 -0.90 -21.77 16 7 C 0.14 2.29 2.23 44.24 0.10 2.39 16 8 H 0.14 1.16 6.10 -2.38 -0.01 1.15 16 9 C -0.17 -2.38 9.18 71.98 0.66 -1.72 16 10 C 0.50 13.14 7.05 87.66 0.62 13.76 16 11 O -0.58 -21.24 15.37 -3.02 -0.05 -21.28 16 12 N -0.60 -14.90 2.97 -818.89 -2.43 -17.33 16 13 C 0.09 1.29 5.13 86.36 0.44 1.74 16 14 C -0.12 -1.99 6.08 30.67 0.19 -1.80 16 15 C -0.12 -3.38 5.13 30.62 0.16 -3.23 16 16 C 0.17 6.24 2.74 45.07 0.12 6.37 16 17 H 0.05 1.92 7.79 -2.39 -0.02 1.90 16 18 N -0.61 -29.59 2.82 -702.36 -1.98 -31.57 16 19 C 0.18 8.45 7.98 127.77 1.02 9.47 16 20 C -0.26 -14.43 9.69 84.03 0.81 -13.62 16 21 H 0.07 3.86 7.78 -2.91 -0.02 3.84 16 22 C -0.05 -3.00 4.92 84.86 0.42 -2.58 16 23 N -0.93 -55.47 10.62 21.65 0.23 -55.24 16 24 Si 0.96 45.23 29.62 68.60 2.03 47.26 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.11 3.97 5.80 86.36 0.50 4.47 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.16 0.75 7.44 -2.39 -0.02 0.73 16 33 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 9.20 8.08 -96.75 -0.78 8.42 16 35 H 0.09 1.25 7.36 -2.39 -0.02 1.23 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.89 6.05 -2.39 -0.01 0.88 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.12 0.79 4.89 -2.39 -0.01 0.78 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.69 6.72 -2.39 -0.02 1.67 16 44 H -0.01 -0.55 7.74 -2.39 -0.02 -0.57 16 45 H 0.03 1.43 6.61 -2.39 -0.02 1.41 16 46 H 0.04 1.53 6.46 -2.39 -0.02 1.51 16 47 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.06 2.17 7.51 -2.39 -0.02 2.15 16 49 H 0.05 2.06 7.00 -2.39 -0.02 2.04 16 Total: -1.00 -82.30 390.12 -1.48 -83.78 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.18 Total: 12.16 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.23 Total: 8.64 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -5.09 Total: -125.92 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -4.53 Total: -71.05 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 45.44 SS G_CDS: -0.30 Total: 45.13 kcal Total: -82.30 -1.48 -83.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266099900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.785 kcal (2) G-P(sol) polarization free energy of solvation -82.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds