Wall clock time and date at job start Wed Apr 1 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81404 * 109.46800 * 2 1 4 4 O 1.42104 * 110.53965 * 68.37809 * 3 2 1 5 5 O 1.42097 * 110.54474 * 291.62212 * 3 2 1 6 6 N 1.65599 * 104.44775 * 179.97438 * 3 2 1 7 7 C 1.46499 * 120.00005 * 65.00435 * 6 3 2 8 8 H 1.08996 * 109.47213 * 334.99353 * 7 6 3 9 9 C 1.53002 * 109.47287 * 94.99757 * 7 6 3 10 10 C 1.50702 * 109.47006 * 214.99786 * 7 6 3 11 11 O 1.21281 * 120.00020 * 336.77381 * 10 7 6 12 12 N 1.34777 * 119.99982 * 156.77952 * 10 7 6 13 13 C 1.46925 * 120.63030 * 355.32487 * 12 10 7 14 14 C 1.53197 * 108.77055 * 126.37338 * 13 12 10 15 15 C 1.53036 * 109.31188 * 54.64144 * 14 13 12 16 16 C 1.53078 * 109.65778 * 298.69432 * 15 14 13 17 17 H 1.09002 * 109.39165 * 301.28399 * 16 15 14 18 18 N 1.46496 * 109.62236 * 181.17089 * 16 15 14 19 19 C 1.46492 * 120.00372 * 300.10690 * 18 16 15 20 20 C 1.36943 * 119.99940 * 120.11113 * 18 16 15 21 21 H 1.08005 * 119.99674 * 324.27491 * 20 18 16 22 22 C 1.38805 * 120.00240 * 144.27605 * 20 18 16 23 23 N 1.31622 * 119.99926 * 159.24787 * 22 20 18 24 24 Si 1.86799 * 120.00182 * 339.25427 * 22 20 18 25 25 H 1.48496 * 109.47177 * 95.35974 * 24 22 20 26 26 H 1.48496 * 109.47266 * 215.36477 * 24 22 20 27 27 H 1.48502 * 109.46699 * 335.35945 * 24 22 20 28 28 C 1.46926 * 120.62988 * 175.31134 * 12 10 7 29 29 H 1.08992 * 109.47183 * 60.00462 * 1 2 3 30 30 H 1.09005 * 109.46450 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47095 * 299.99648 * 1 2 3 32 32 H 1.09002 * 109.47393 * 240.00207 * 2 1 3 33 33 H 1.09001 * 109.47285 * 120.00144 * 2 1 3 34 34 H 0.97006 * 120.00211 * 244.99527 * 6 3 2 35 35 H 1.08994 * 109.46949 * 64.62718 * 9 7 6 36 36 H 1.08998 * 109.46832 * 184.62821 * 9 7 6 37 37 H 1.08998 * 109.46785 * 304.62652 * 9 7 6 38 38 H 1.08992 * 109.58957 * 246.15933 * 13 12 10 39 39 H 1.09003 * 109.58705 * 6.59031 * 13 12 10 40 40 H 1.09007 * 109.49598 * 174.58768 * 14 13 12 41 41 H 1.08997 * 109.49931 * 294.65128 * 14 13 12 42 42 H 1.08992 * 109.46146 * 58.65279 * 15 14 13 43 43 H 1.09000 * 109.45838 * 178.62828 * 15 14 13 44 44 H 1.09003 * 109.47236 * 85.59615 * 19 18 16 45 45 H 1.09002 * 109.47583 * 205.59682 * 19 18 16 46 46 H 1.09001 * 109.47248 * 325.59991 * 19 18 16 47 47 H 0.97000 * 119.99924 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.58730 * 353.41294 * 28 12 10 49 49 H 1.09002 * 109.58603 * 113.69788 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3438 1.2371 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.4675 0.9671 -1.1488 8 1 3.7819 0.3010 -1.6727 9 6 4.9303 2.0731 -2.0994 10 6 5.6624 0.1831 -0.6706 11 8 6.1725 0.4465 0.3976 12 7 6.1641 -0.8108 -1.4302 13 6 5.4973 -1.2095 -2.6772 14 6 6.5188 -1.1662 -3.8181 15 6 7.7275 -2.0288 -3.4482 16 6 8.3901 -1.4724 -2.1854 17 1 8.6973 -0.4416 -2.3621 18 7 9.5634 -2.2820 -1.8480 19 6 9.4106 -3.7115 -1.5663 20 6 10.8031 -1.7026 -1.7957 21 1 11.0613 -0.9162 -2.4896 22 6 11.7278 -2.1259 -0.8510 23 7 13.0102 -1.8936 -1.0352 24 14 11.1523 -3.0254 0.6817 25 1 11.2484 -4.4907 0.4612 26 1 12.0086 -2.6407 1.8323 27 1 9.7422 -2.6596 0.9701 28 6 7.3885 -1.5158 -1.0272 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.2982 1.8768 0.7622 35 1 5.6779 2.6906 -1.6017 36 1 5.3651 1.6255 -2.9931 37 1 4.0774 2.6908 -2.3805 38 1 5.1063 -2.2218 -2.5751 39 1 4.6807 -0.5200 -2.8916 40 1 6.0623 -1.5515 -4.7300 41 1 6.8409 -0.1374 -3.9792 42 1 7.4006 -3.0520 -3.2636 43 1 8.4451 -2.0192 -4.2687 44 1 9.4352 -4.2708 -2.5016 45 1 10.2249 -4.0441 -0.9226 46 1 8.4580 -3.8833 -1.0653 47 1 13.6564 -2.1897 -0.3752 48 1 7.8197 -1.0285 -0.1527 49 1 7.1513 -2.5525 -0.7880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266099901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:53 Heat of formation + Delta-G solvation = -75.704503 kcal Electronic energy + Delta-G solvation = -30441.610016 eV Core-core repulsion = 26339.091300 eV Total energy + Delta-G solvation = -4102.518717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.45940 -37.94701 -37.43329 -36.30429 -35.68106 -35.40080 -33.63150 -32.52899 -31.63560 -30.47668 -29.28810 -26.29485 -25.81830 -24.55378 -24.26158 -23.29562 -21.78174 -20.00197 -19.76713 -18.90627 -18.41374 -17.13412 -16.93118 -16.76292 -16.59778 -15.95714 -15.56651 -15.28817 -15.01239 -14.59138 -14.42261 -14.23362 -13.93929 -13.77092 -13.52958 -13.37522 -13.00389 -12.94621 -12.81196 -12.56240 -12.46358 -12.42380 -12.33061 -12.29293 -12.23516 -12.11249 -11.98741 -11.88794 -11.48336 -11.14775 -11.10224 -10.74172 -10.64062 -10.48633 -10.17345 -10.11034 -9.98866 -9.65337 -9.57940 -8.62190 -8.56272 -6.93419 -6.04021 -3.46721 -0.13538 2.21610 2.51861 2.95622 3.26887 3.41007 3.45428 3.48625 3.76843 4.08640 4.17418 4.27413 4.37144 4.46901 4.65225 4.70154 4.77597 4.92025 4.93878 5.04595 5.09204 5.11422 5.21382 5.24796 5.34383 5.42615 5.51001 5.54449 5.62806 5.65451 5.73240 5.90927 5.99530 6.01199 6.13848 6.22888 6.28633 6.38969 6.49484 6.62142 6.66185 6.76033 6.78558 7.38696 7.96841 8.09035 8.30339 8.89757 9.63976 10.01176 11.11345 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.002824 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.757114 B = 9914.188756 C =10317.219815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.612 3.388 4 O -0.953 6.953 5 O -0.951 6.951 6 N -1.103 6.103 7 C 0.135 3.865 8 H 0.100 0.900 9 C -0.167 4.167 10 C 0.507 3.493 11 O -0.529 6.529 12 N -0.602 5.602 13 C 0.099 3.901 14 C -0.132 4.132 15 C -0.132 4.132 16 C 0.167 3.833 17 H 0.075 0.925 18 N -0.601 5.601 19 C 0.109 3.891 20 C -0.270 4.270 21 H 0.081 0.919 22 C 0.034 3.966 23 N -0.900 5.900 24 Si 0.886 3.114 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.269 1.269 28 C 0.092 3.908 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.428 0.572 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.018 0.982 45 H 0.047 0.953 46 H 0.028 0.972 47 H 0.264 0.736 48 H 0.093 0.907 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.301 1.487 -3.741 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.766 4.766 3 S 2.704 3.296 4 O -0.944 6.944 5 O -0.941 6.941 6 N -0.864 5.864 7 C 0.024 3.976 8 H 0.118 0.882 9 C -0.226 4.226 10 C 0.292 3.708 11 O -0.405 6.405 12 N -0.336 5.336 13 C -0.024 4.024 14 C -0.171 4.171 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.094 0.906 18 N -0.324 5.324 19 C -0.036 4.036 20 C -0.399 4.399 21 H 0.099 0.901 22 C -0.167 4.167 23 N -0.541 5.541 24 Si 0.717 3.283 25 H -0.216 1.216 26 H -0.230 1.230 27 H -0.194 1.194 28 C -0.032 4.032 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.266 0.734 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.111 0.889 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.388 2.346 -3.238 25.701 hybrid contribution 0.293 -1.414 1.224 1.893 sum -25.095 0.931 -2.014 25.193 Atomic orbital electron populations 1.21497 0.90229 1.05207 1.03535 1.30552 1.07507 1.26641 1.11866 1.05059 0.72774 0.77284 0.74527 1.93624 1.82834 1.72935 1.44965 1.93611 1.83254 1.71811 1.45387 1.55547 1.25720 1.77157 1.27960 1.20706 0.94378 0.95445 0.87115 0.88225 1.22260 1.03561 0.98245 0.98534 1.20548 0.85308 0.80209 0.84725 1.90717 1.60769 1.67115 1.21850 1.48244 1.27300 1.34948 1.23120 1.21906 0.95469 1.00758 0.84243 1.21916 0.96496 1.01634 0.97023 1.22046 0.96341 0.98807 0.99967 1.20773 0.86437 0.96138 0.90785 0.90643 1.44069 1.03308 1.02852 1.82164 1.21343 0.98491 0.85669 0.98079 1.18807 0.87162 1.20779 1.13137 0.90093 1.25454 0.95202 0.98420 0.97589 1.69840 1.00360 1.48506 1.35430 0.86826 0.78948 0.78385 0.84128 1.21572 1.23018 1.19436 1.22562 0.83433 0.96095 1.01062 0.90827 0.89902 0.90887 0.85161 0.84663 0.73439 0.90951 0.90559 0.89589 0.91071 0.90115 0.90852 0.91246 0.92415 0.91205 0.96408 0.93469 0.95333 0.92594 0.88887 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.92 37.16 0.37 -0.38 16 2 C -0.64 -3.61 6.68 37.16 0.25 -3.36 16 3 S 2.61 23.28 5.38 -107.50 -0.58 22.70 16 4 O -0.95 -11.76 18.08 -57.54 -1.04 -12.80 16 5 O -0.95 -10.43 17.06 -57.54 -0.98 -11.42 16 6 N -1.10 -10.70 5.30 -5.88 -0.03 -10.73 16 7 C 0.13 1.30 2.23 -69.08 -0.15 1.15 16 8 H 0.10 0.61 5.39 -51.93 -0.28 0.33 16 9 C -0.17 -1.55 9.39 37.16 0.35 -1.20 16 10 C 0.51 6.86 6.92 -10.98 -0.08 6.78 16 11 O -0.53 -9.34 15.51 5.56 0.09 -9.25 16 12 N -0.60 -7.85 2.97 -172.77 -0.51 -8.36 16 13 C 0.10 0.89 6.13 -3.71 -0.02 0.87 16 14 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 15 C -0.13 -1.86 5.15 -26.67 -0.14 -1.99 16 16 C 0.17 3.03 2.75 -67.79 -0.19 2.85 16 17 H 0.08 1.49 7.89 -51.93 -0.41 1.08 16 18 N -0.60 -13.55 2.42 -173.33 -0.42 -13.97 16 19 C 0.11 2.25 8.46 59.84 0.51 2.76 16 20 C -0.27 -7.37 9.87 -15.06 -0.15 -7.52 16 21 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 22 C 0.03 0.97 5.32 -17.43 -0.09 0.88 16 23 N -0.90 -27.27 13.97 55.49 0.78 -26.50 16 24 Si 0.89 22.26 24.84 -169.99 -4.22 18.04 16 25 H -0.29 -6.96 6.68 56.52 0.38 -6.58 16 26 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.09 1.56 5.77 -3.71 -0.02 1.54 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.13 0.48 7.44 -51.92 -0.39 0.10 16 33 H 0.14 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.43 4.51 8.06 -34.47 -0.28 4.23 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.60 7.62 -51.93 -0.40 0.20 16 37 H 0.09 0.77 7.37 -51.93 -0.38 0.39 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.49 5.06 -51.93 -0.26 0.23 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 1.08 3.11 -51.93 -0.16 0.92 16 46 H 0.03 0.51 6.35 -51.93 -0.33 0.18 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.09 1.91 7.03 -51.93 -0.37 1.55 16 49 H 0.06 1.02 6.49 -51.93 -0.34 0.68 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -36.41 388.41 -8.40 -44.81 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.80 Total: 0.73 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 0.47 Total: 0.89 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.19 Total: -59.56 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.94 Total: -33.46 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.22 Total: 18.04 kcal Atomic # 16 Polarization: 23.28 SS G_CDS: -0.58 Total: 22.70 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.41 -8.40 -44.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266099901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.898 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds