Wall clock time and date at job start Wed Apr 1 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81404 * 109.46800 * 2 1 4 4 O 1.42104 * 110.53965 * 68.37809 * 3 2 1 5 5 O 1.42097 * 110.54474 * 291.62212 * 3 2 1 6 6 N 1.65599 * 104.44775 * 179.97438 * 3 2 1 7 7 C 1.46499 * 120.00005 * 65.00435 * 6 3 2 8 8 H 1.08996 * 109.47213 * 334.99353 * 7 6 3 9 9 C 1.53002 * 109.47287 * 94.99757 * 7 6 3 10 10 C 1.50702 * 109.47006 * 214.99786 * 7 6 3 11 11 O 1.21281 * 120.00020 * 336.77381 * 10 7 6 12 12 N 1.34777 * 119.99982 * 156.77952 * 10 7 6 13 13 C 1.46925 * 120.63030 * 355.32487 * 12 10 7 14 14 C 1.53197 * 108.77055 * 126.37338 * 13 12 10 15 15 C 1.53036 * 109.31188 * 54.64144 * 14 13 12 16 16 C 1.53078 * 109.65778 * 298.69432 * 15 14 13 17 17 H 1.09002 * 109.39165 * 301.28399 * 16 15 14 18 18 N 1.46496 * 109.62236 * 181.17089 * 16 15 14 19 19 C 1.46492 * 120.00372 * 300.10690 * 18 16 15 20 20 C 1.36943 * 119.99940 * 120.11113 * 18 16 15 21 21 H 1.08005 * 119.99674 * 324.27491 * 20 18 16 22 22 C 1.38805 * 120.00240 * 144.27605 * 20 18 16 23 23 N 1.31622 * 119.99926 * 159.24787 * 22 20 18 24 24 Si 1.86799 * 120.00182 * 339.25427 * 22 20 18 25 25 H 1.48496 * 109.47177 * 95.35974 * 24 22 20 26 26 H 1.48496 * 109.47266 * 215.36477 * 24 22 20 27 27 H 1.48502 * 109.46699 * 335.35945 * 24 22 20 28 28 C 1.46926 * 120.62988 * 175.31134 * 12 10 7 29 29 H 1.08992 * 109.47183 * 60.00462 * 1 2 3 30 30 H 1.09005 * 109.46450 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47095 * 299.99648 * 1 2 3 32 32 H 1.09002 * 109.47393 * 240.00207 * 2 1 3 33 33 H 1.09001 * 109.47285 * 120.00144 * 2 1 3 34 34 H 0.97006 * 120.00211 * 244.99527 * 6 3 2 35 35 H 1.08994 * 109.46949 * 64.62718 * 9 7 6 36 36 H 1.08998 * 109.46832 * 184.62821 * 9 7 6 37 37 H 1.08998 * 109.46785 * 304.62652 * 9 7 6 38 38 H 1.08992 * 109.58957 * 246.15933 * 13 12 10 39 39 H 1.09003 * 109.58705 * 6.59031 * 13 12 10 40 40 H 1.09007 * 109.49598 * 174.58768 * 14 13 12 41 41 H 1.08997 * 109.49931 * 294.65128 * 14 13 12 42 42 H 1.08992 * 109.46146 * 58.65279 * 15 14 13 43 43 H 1.09000 * 109.45838 * 178.62828 * 15 14 13 44 44 H 1.09003 * 109.47236 * 85.59615 * 19 18 16 45 45 H 1.09002 * 109.47583 * 205.59682 * 19 18 16 46 46 H 1.09001 * 109.47248 * 325.59991 * 19 18 16 47 47 H 0.97000 * 119.99924 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.58730 * 353.41294 * 28 12 10 49 49 H 1.09002 * 109.58603 * 113.69788 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3438 1.2371 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.4675 0.9671 -1.1488 8 1 3.7819 0.3010 -1.6727 9 6 4.9303 2.0731 -2.0994 10 6 5.6624 0.1831 -0.6706 11 8 6.1725 0.4465 0.3976 12 7 6.1641 -0.8108 -1.4302 13 6 5.4973 -1.2095 -2.6772 14 6 6.5188 -1.1662 -3.8181 15 6 7.7275 -2.0288 -3.4482 16 6 8.3901 -1.4724 -2.1854 17 1 8.6973 -0.4416 -2.3621 18 7 9.5634 -2.2820 -1.8480 19 6 9.4106 -3.7115 -1.5663 20 6 10.8031 -1.7026 -1.7957 21 1 11.0613 -0.9162 -2.4896 22 6 11.7278 -2.1259 -0.8510 23 7 13.0102 -1.8936 -1.0352 24 14 11.1523 -3.0254 0.6817 25 1 11.2484 -4.4907 0.4612 26 1 12.0086 -2.6407 1.8323 27 1 9.7422 -2.6596 0.9701 28 6 7.3885 -1.5158 -1.0272 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.2982 1.8768 0.7622 35 1 5.6779 2.6906 -1.6017 36 1 5.3651 1.6255 -2.9931 37 1 4.0774 2.6908 -2.3805 38 1 5.1063 -2.2218 -2.5751 39 1 4.6807 -0.5200 -2.8916 40 1 6.0623 -1.5515 -4.7300 41 1 6.8409 -0.1374 -3.9792 42 1 7.4006 -3.0520 -3.2636 43 1 8.4451 -2.0192 -4.2687 44 1 9.4352 -4.2708 -2.5016 45 1 10.2249 -4.0441 -0.9226 46 1 8.4580 -3.8833 -1.0653 47 1 13.6564 -2.1897 -0.3752 48 1 7.8197 -1.0285 -0.1527 49 1 7.1513 -2.5525 -0.7880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266099901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:52 Heat of formation + Delta-G solvation = -105.502845 kcal Electronic energy + Delta-G solvation = -30442.902169 eV Core-core repulsion = 26339.091300 eV Total energy + Delta-G solvation = -4103.810870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51212 -39.20015 -38.22934 -37.08098 -36.91473 -36.52621 -34.12364 -34.02958 -33.10240 -31.53028 -30.41662 -28.09608 -26.88126 -25.64013 -24.95840 -24.41924 -22.99074 -21.26439 -20.45186 -19.98774 -19.24149 -18.89469 -17.96454 -17.69948 -17.39894 -17.32852 -16.69209 -16.46067 -16.00037 -15.71078 -15.38028 -15.18499 -15.10839 -14.76511 -14.51863 -14.40765 -14.21600 -14.10099 -14.01791 -13.80287 -13.65976 -13.42198 -13.36841 -13.23404 -13.11356 -13.05678 -12.81133 -12.73724 -12.54698 -12.37966 -12.22125 -12.05803 -11.85909 -11.79644 -11.65379 -11.62758 -11.42509 -10.93597 -10.65847 -10.51987 -9.74260 -8.78598 -8.23939 -5.61658 -0.78315 1.24540 1.39155 1.41381 1.48122 1.55951 1.99798 2.36655 2.77426 3.04026 3.17419 3.27344 3.35059 3.59543 3.70574 3.90627 3.96438 4.00337 4.06281 4.13904 4.18304 4.26692 4.34416 4.40681 4.53346 4.63721 4.71506 4.73060 4.75994 4.81097 4.84138 4.87609 4.87924 4.94124 4.99138 5.06819 5.14477 5.20852 5.26547 5.46241 5.47573 5.54231 5.83716 5.88952 6.12095 6.39198 6.93301 7.06614 7.58788 7.97753 8.96081 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.002824 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.757114 B = 9914.188756 C =10317.219815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.614 4.614 3 S 2.614 3.386 4 O -0.996 6.996 5 O -0.975 6.975 6 N -1.110 6.110 7 C 0.139 3.861 8 H 0.147 0.853 9 C -0.169 4.169 10 C 0.503 3.497 11 O -0.580 6.580 12 N -0.600 5.600 13 C 0.091 3.909 14 C -0.126 4.126 15 C -0.123 4.123 16 C 0.164 3.836 17 H 0.044 0.956 18 N -0.617 5.617 19 C 0.107 3.893 20 C -0.257 4.257 21 H 0.042 0.958 22 C -0.025 4.025 23 N -0.951 5.951 24 Si 0.951 3.049 25 H -0.268 1.268 26 H -0.314 1.314 27 H -0.264 1.264 28 C 0.105 3.895 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.421 0.579 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.025 0.975 46 H 0.060 0.940 47 H 0.263 0.737 48 H 0.047 0.953 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.539 -0.886 -5.160 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.748 4.748 3 S 2.710 3.290 4 O -0.987 6.987 5 O -0.965 6.965 6 N -0.868 5.868 7 C 0.028 3.972 8 H 0.164 0.836 9 C -0.228 4.228 10 C 0.290 3.710 11 O -0.459 6.459 12 N -0.332 5.332 13 C -0.030 4.030 14 C -0.165 4.165 15 C -0.162 4.162 16 C 0.057 3.943 17 H 0.063 0.937 18 N -0.341 5.341 19 C -0.037 4.037 20 C -0.387 4.387 21 H 0.060 0.940 22 C -0.221 4.221 23 N -0.596 5.596 24 Si 0.780 3.220 25 H -0.195 1.195 26 H -0.244 1.244 27 H -0.188 1.188 28 C -0.020 4.020 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.257 0.743 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.687 -0.003 -4.711 30.059 hybrid contribution 1.556 -0.646 1.543 2.284 sum -28.132 -0.649 -3.168 28.317 Atomic orbital electron populations 1.21688 0.89657 1.06608 1.03852 1.30371 1.07873 1.22350 1.14177 1.04900 0.72137 0.78829 0.73121 1.93567 1.83232 1.75314 1.46601 1.93573 1.83330 1.73846 1.45743 1.55578 1.25969 1.77435 1.27843 1.20867 0.93546 0.95614 0.87149 0.83575 1.22308 1.03343 0.98166 0.98959 1.21272 0.85903 0.79818 0.83987 1.90701 1.62496 1.68371 1.24343 1.48269 1.25967 1.34436 1.24573 1.22350 0.95681 1.03515 0.81412 1.21921 0.94949 1.00556 0.99035 1.21909 0.97475 1.00257 0.96557 1.20881 0.85646 0.94318 0.93431 0.93743 1.44174 1.03015 1.04248 1.82626 1.21407 0.99184 0.84289 0.98816 1.18700 0.89285 1.19164 1.11509 0.94016 1.26080 0.95128 1.00507 1.00399 1.69970 1.01608 1.51451 1.36545 0.85775 0.78159 0.78280 0.79752 1.19490 1.24364 1.18804 1.22027 0.84900 0.96556 0.98501 0.90116 0.87813 0.91341 0.81871 0.83469 0.74282 0.93183 0.88654 0.88941 0.88247 0.86161 0.87036 0.91844 0.90937 0.93005 0.94685 0.95682 0.92127 0.92796 0.93393 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.92 71.98 0.71 -0.32 16 2 C -0.61 -4.31 6.68 71.98 0.48 -3.83 16 3 S 2.61 41.78 5.38 -56.49 -0.30 41.48 16 4 O -1.00 -24.43 18.08 -127.65 -2.31 -26.74 16 5 O -0.97 -19.35 17.06 -127.65 -2.18 -21.53 16 6 N -1.11 -19.95 5.30 -172.52 -0.91 -20.87 16 7 C 0.14 2.27 2.23 44.25 0.10 2.37 16 8 H 0.15 0.93 5.39 -2.39 -0.01 0.92 16 9 C -0.17 -2.76 9.39 71.98 0.68 -2.09 16 10 C 0.50 12.73 6.92 87.66 0.61 13.34 16 11 O -0.58 -20.77 15.51 -3.03 -0.05 -20.81 16 12 N -0.60 -13.92 2.97 -818.90 -2.44 -16.36 16 13 C 0.09 1.11 6.13 86.36 0.53 1.64 16 14 C -0.13 -1.92 6.08 30.67 0.19 -1.74 16 15 C -0.12 -3.12 5.15 30.63 0.16 -2.96 16 16 C 0.16 5.90 2.75 45.08 0.12 6.02 16 17 H 0.04 1.83 7.89 -2.39 -0.02 1.81 16 18 N -0.62 -27.86 2.42 -702.29 -1.70 -29.56 16 19 C 0.11 4.21 8.46 127.77 1.08 5.29 16 20 C -0.26 -14.56 9.87 84.03 0.83 -13.73 16 21 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 22 C -0.03 -1.47 5.32 84.86 0.45 -1.02 16 23 N -0.95 -60.19 13.97 21.65 0.30 -59.88 16 24 Si 0.95 47.17 24.84 68.60 1.70 48.87 16 25 H -0.27 -12.33 6.68 99.48 0.66 -11.66 16 26 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 27 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 28 C 0.11 3.44 5.77 86.36 0.50 3.93 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.16 0.12 7.44 -2.39 -0.02 0.10 16 33 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.42 8.99 8.06 -96.74 -0.78 8.21 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.17 7.62 -2.39 -0.02 1.15 16 37 H 0.09 1.44 7.37 -2.39 -0.02 1.42 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.12 0.58 5.06 -2.39 -0.01 0.56 16 40 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.65 7.71 -2.39 -0.02 1.63 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.02 1.10 3.11 -2.39 -0.01 1.10 16 46 H 0.06 1.98 6.35 -2.39 -0.02 1.97 16 47 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 48 H 0.05 2.01 7.03 -2.39 -0.02 1.99 16 49 H 0.07 2.23 6.49 -2.39 -0.02 2.21 16 Total: -1.00 -86.85 388.41 -1.31 -88.16 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.14 Total: 10.31 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.43 Total: 6.93 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -4.75 Total: -126.67 kcal Atomic # 8 Polarization: -64.55 SS G_CDS: -4.53 Total: -69.08 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.70 Total: 48.87 kcal Atomic # 16 Polarization: 41.78 SS G_CDS: -0.30 Total: 41.48 kcal Total: -86.85 -1.31 -88.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266099901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.343 kcal (2) G-P(sol) polarization free energy of solvation -86.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds