Wall clock time and date at job start Wed Apr 1 2020 05:36:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 S 1.81400 * 109.47259 * 2 1
4 4 O 1.42102 * 110.54611 * 68.37632 * 3 2 1
5 5 O 1.42102 * 110.54223 * 291.62384 * 3 2 1
6 6 N 1.65600 * 104.45217 * 180.02562 * 3 2 1
7 7 C 1.46501 * 119.99868 * 64.99741 * 6 3 2
8 8 C 1.50700 * 109.46850 * 165.00040 * 7 6 3
9 9 O 1.21284 * 120.00178 * 0.02562 * 8 7 6
10 10 N 1.34777 * 119.99694 * 179.97438 * 8 7 6
11 11 C 1.46506 * 119.99806 * 180.27570 * 10 8 7
12 12 C 1.53000 * 109.47010 * 179.72853 * 11 10 8
13 13 C 1.52997 * 109.46251 * 60.02943 * 12 11 10
14 14 C 1.53039 * 109.45918 * 300.06786 * 12 11 10
15 15 C 1.53194 * 109.31386 * 178.61689 * 14 12 11
16 16 N 1.46925 * 108.77707 * 54.63515 * 15 14 12
17 17 C 1.36935 * 120.63227 * 126.41254 * 16 15 14
18 18 H 1.08000 * 120.00045 * 207.65692 * 17 16 15
19 19 C 1.38807 * 119.99791 * 27.66369 * 17 16 15
20 20 N 1.31621 * 120.00424 * 17.37542 * 19 17 16
21 21 Si 1.86806 * 119.99910 * 197.37585 * 19 17 16
22 22 H 1.48499 * 109.46916 * 0.02562 * 21 19 17
23 23 H 1.48503 * 109.47085 * 119.99644 * 21 19 17
24 24 H 1.48500 * 109.46792 * 239.99733 * 21 19 17
25 25 C 1.46930 * 118.73652 * 306.39281 * 16 15 14
26 26 C 1.53038 * 109.45922 * 180.02562 * 12 11 10
27 27 H 1.08999 * 109.47447 * 59.99660 * 1 2 3
28 28 H 1.08994 * 109.47427 * 180.02562 * 1 2 3
29 29 H 1.09005 * 109.47310 * 300.00178 * 1 2 3
30 30 H 1.08996 * 109.47589 * 239.99839 * 2 1 3
31 31 H 1.09004 * 109.47475 * 119.99860 * 2 1 3
32 32 H 0.97003 * 120.00066 * 245.00141 * 6 3 2
33 33 H 1.09002 * 109.47164 * 45.00237 * 7 6 3
34 34 H 1.08996 * 109.47007 * 285.00062 * 7 6 3
35 35 H 0.96994 * 120.00202 * 0.02562 * 10 8 7
36 36 H 1.09001 * 109.47261 * 299.72716 * 11 10 8
37 37 H 1.08997 * 109.46909 * 59.73076 * 11 10 8
38 38 H 1.08996 * 109.47030 * 59.99661 * 13 12 11
39 39 H 1.09000 * 109.47578 * 180.02562 * 13 12 11
40 40 H 1.09007 * 109.46976 * 300.00265 * 13 12 11
41 41 H 1.08996 * 109.50008 * 298.56331 * 14 12 11
42 42 H 1.08998 * 109.49697 * 58.66557 * 14 12 11
43 43 H 1.09005 * 109.58390 * 294.84461 * 15 14 12
44 44 H 1.08998 * 109.58578 * 174.42352 * 15 14 12
45 45 H 0.97001 * 120.00341 * 180.02562 * 20 19 17
46 46 H 1.08997 * 109.58989 * 293.82028 * 25 16 15
47 47 H 1.08996 * 109.70146 * 173.46159 * 25 16 15
48 48 H 1.08999 * 109.49674 * 301.33327 * 26 12 11
49 49 H 1.08999 * 109.50309 * 61.43056 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 16 2.1346 1.7102 0.0000
4 8 1.8386 2.3439 1.2370
5 8 1.8385 2.3438 -1.2370
6 7 3.7843 1.5653 -0.0007
7 6 4.4665 0.9672 -1.1510
8 6 5.9392 1.2790 -1.0793
9 8 6.3759 1.9357 -0.1579
10 7 6.7711 0.8271 -2.0386
11 6 8.2037 1.1251 -1.9658
12 6 8.9171 0.4953 -3.1638
13 6 8.3423 1.0707 -4.4596
14 6 8.7080 -1.0206 -3.1425
15 6 9.3944 -1.6439 -4.3620
16 7 10.8039 -1.2294 -4.3747
17 6 11.8046 -2.1611 -4.4492
18 1 12.7750 -1.9463 -4.0268
19 6 11.5717 -3.3818 -5.0677
20 7 10.5383 -3.5265 -5.8700
21 14 12.7248 -4.8191 -4.7615
22 1 13.8003 -4.4005 -3.8270
23 1 11.9634 -5.9465 -4.1659
24 1 13.3270 -5.2532 -6.0476
25 6 11.1193 0.2041 -4.3063
26 6 10.4136 0.8061 -3.0871
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 1.8933 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 4.2988 1.8764 0.7605
33 1 4.0528 1.3771 -2.0723
34 1 4.3227 -0.1131 -1.1372
35 1 6.4219 0.3016 -2.7753
36 1 8.3515 2.2049 -1.9814
37 1 8.6134 0.7155 -1.0425
38 1 8.4904 2.1504 -4.4748
39 1 8.8501 0.6218 -5.3133
40 1 7.2763 0.8495 -4.5140
41 1 9.1394 -1.4347 -2.2312
42 1 7.6410 -1.2411 -3.1734
43 1 8.9041 -1.3000 -5.2728
44 1 9.3336 -2.7304 -4.2999
45 1 10.3753 -4.3796 -6.3019
46 1 10.7697 0.6988 -5.2125
47 1 12.1964 0.3390 -4.2086
48 1 10.5609 1.8861 -3.0785
49 1 10.8287 0.3747 -2.1763
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001270885167.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:36:58
Heat of formation + Delta-G solvation = -124.063118 kcal
Electronic energy + Delta-G solvation = -29180.647166 eV
Core-core repulsion = 25076.031463 eV
Total energy + Delta-G solvation = -4104.615704 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.14329 -39.88852 -38.20590 -37.05900 -36.67703 -35.65730 -34.68220 -33.99702
-32.69151 -31.54337 -29.27468 -28.40729 -27.16960 -25.47219 -24.92107 -23.88317
-22.47049 -21.55647 -20.36831 -19.64771 -19.20481 -18.37463 -17.98736 -17.47015
-17.18403 -16.78906 -16.75598 -16.62667 -15.86309 -15.68289 -15.47235 -15.22205
-15.09186 -14.99118 -14.53898 -14.39383 -14.26767 -14.02777 -13.88906 -13.39578
-13.32977 -13.23923 -13.15421 -13.13277 -13.07871 -12.94140 -12.64599 -12.55945
-12.36246 -12.30797 -12.20318 -11.86448 -11.76738 -11.59074 -11.43681 -11.21287
-11.02283 -10.95400 -10.51666 -10.46769 -10.05283 -8.60662 -7.84764 -5.27733
-0.75981 1.45516 1.48619 1.57675 1.57992 1.63219 2.24646 2.52781
2.82998 3.23248 3.28993 3.57944 3.75254 3.75591 3.84500 3.90620
3.95491 3.98897 4.27688 4.34577 4.42918 4.45113 4.55024 4.58859
4.66036 4.75070 4.76347 4.82873 4.87943 4.89733 4.89951 4.99933
5.10711 5.15651 5.17844 5.30670 5.35519 5.43826 5.44222 5.54784
5.59376 5.70351 5.90288 5.92180 6.43178 6.53957 7.19148 7.20038
7.92828 8.42376 9.20797
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.018859 B = 0.002061 C = 0.001948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1484.369779 B =13582.788872 C =14368.628658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.606 4.606
3 S 2.616 3.384
4 O -0.998 6.998
5 O -0.992 6.992
6 N -1.114 6.114
7 C 0.089 3.911
8 C 0.508 3.492
9 O -0.579 6.579
10 N -0.710 5.710
11 C 0.141 3.859
12 C -0.054 4.054
13 C -0.138 4.138
14 C -0.116 4.116
15 C 0.177 3.823
16 N -0.610 5.610
17 C -0.259 4.259
18 H 0.060 0.940
19 C -0.049 4.049
20 N -0.931 5.931
21 Si 0.960 3.040
22 H -0.271 1.271
23 H -0.289 1.289
24 H -0.294 1.294
25 C 0.142 3.858
26 C -0.113 4.113
27 H 0.074 0.926
28 H 0.103 0.897
29 H 0.069 0.931
30 H 0.164 0.836
31 H 0.157 0.843
32 H 0.423 0.577
33 H 0.127 0.873
34 H 0.142 0.858
35 H 0.416 0.584
36 H 0.066 0.934
37 H 0.056 0.944
38 H 0.062 0.938
39 H 0.045 0.955
40 H 0.069 0.931
41 H 0.043 0.957
42 H 0.077 0.923
43 H 0.008 0.992
44 H 0.048 0.952
45 H 0.249 0.751
46 H 0.021 0.979
47 H 0.045 0.955
48 H 0.079 0.921
49 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.230 6.061 9.631 22.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.740 4.740
3 S 2.713 3.287
4 O -0.988 6.988
5 O -0.982 6.982
6 N -0.875 5.875
7 C -0.041 4.041
8 C 0.293 3.707
9 O -0.459 6.459
10 N -0.363 5.363
11 C 0.017 3.983
12 C -0.055 4.055
13 C -0.195 4.195
14 C -0.155 4.155
15 C 0.051 3.949
16 N -0.334 5.334
17 C -0.389 4.389
18 H 0.078 0.922
19 C -0.244 4.244
20 N -0.577 5.577
21 Si 0.789 3.211
22 H -0.196 1.196
23 H -0.216 1.216
24 H -0.221 1.221
25 C 0.017 3.983
26 C -0.152 4.152
27 H 0.093 0.907
28 H 0.122 0.878
29 H 0.088 0.912
30 H 0.182 0.818
31 H 0.175 0.825
32 H 0.259 0.741
33 H 0.145 0.855
34 H 0.160 0.840
35 H 0.254 0.746
36 H 0.085 0.915
37 H 0.074 0.926
38 H 0.081 0.919
39 H 0.064 0.936
40 H 0.087 0.913
41 H 0.062 0.938
42 H 0.095 0.905
43 H 0.026 0.974
44 H 0.066 0.934
45 H 0.058 0.942
46 H 0.039 0.961
47 H 0.063 0.937
48 H 0.097 0.903
49 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -19.489 7.183 10.021 23.062
hybrid contribution 1.243 -1.623 -0.164 2.051
sum -18.246 5.560 9.856 21.471
Atomic orbital electron populations
1.21704 0.90281 1.06524 1.03677 1.30304 1.07326 1.21726 1.14618
1.04737 0.72333 0.78903 0.72720 1.93561 1.83337 1.75392 1.46522
1.93558 1.83623 1.74456 1.46606 1.55310 1.25781 1.78579 1.27874
1.21424 0.89184 1.02349 0.91113 1.20925 0.89444 0.78751 0.81539
1.90693 1.78440 1.41094 1.35637 1.45936 1.08023 1.55232 1.27140
1.21290 0.79627 0.99750 0.97657 1.20566 0.95104 0.95043 0.94778
1.21886 1.00865 1.00538 0.96227 1.22053 1.00042 0.94510 0.98880
1.20636 0.82839 0.98072 0.93326 1.44313 1.02388 1.00976 1.85719
1.19494 0.94172 0.96024 1.29235 0.92209 1.25674 0.99882 1.01812
0.97072 1.70167 1.32105 1.24259 1.31208 0.85319 0.78734 0.79921
0.77135 1.19571 1.21602 1.22085 1.21037 0.97444 0.84355 0.95490
1.21883 0.94296 1.00378 0.98666 0.90733 0.87830 0.91164 0.81806
0.82512 0.74063 0.85524 0.84025 0.74590 0.91535 0.92564 0.91906
0.93599 0.91253 0.93828 0.90498 0.97373 0.93375 0.94174 0.96066
0.93664 0.90268 0.92956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.97 9.92 71.98 0.71 -0.26 16
2 C -0.61 -2.98 6.79 71.98 0.49 -2.49 16
3 S 2.62 38.35 5.46 -56.49 -0.31 38.04 16
4 O -1.00 -22.93 18.08 -127.65 -2.31 -25.23 16
5 O -0.99 -21.15 17.49 -127.65 -2.23 -23.39 16
6 N -1.11 -16.19 5.82 -190.79 -1.11 -17.30 16
7 C 0.09 1.00 6.61 85.63 0.57 1.56 16
8 C 0.51 9.96 7.90 87.66 0.69 10.65 16
9 O -0.58 -16.41 15.73 -3.04 -0.05 -16.46 16
10 N -0.71 -12.82 4.95 -463.05 -2.29 -15.12 16
11 C 0.14 3.25 4.56 86.38 0.39 3.64 16
12 C -0.05 -1.44 0.53 -52.16 -0.03 -1.46 16
13 C -0.14 -3.39 7.54 71.98 0.54 -2.84 16
14 C -0.12 -3.64 4.75 30.67 0.15 -3.49 16
15 C 0.18 7.69 4.84 86.36 0.42 8.11 16
16 N -0.61 -28.97 2.99 -699.08 -2.09 -31.06 16
17 C -0.26 -13.88 9.59 84.03 0.81 -13.07 16
18 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16
19 C -0.05 -2.66 4.91 84.86 0.42 -2.25 16
20 N -0.93 -53.03 11.19 21.65 0.24 -52.79 16
21 Si 0.96 43.98 29.59 68.60 2.03 46.01 16
22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16
24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
25 C 0.14 5.51 6.05 86.36 0.52 6.04 16
26 C -0.11 -3.40 4.91 30.67 0.15 -3.25 16
27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16
28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16
29 H 0.07 0.46 8.14 -2.38 -0.02 0.45 16
30 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16
31 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16
32 H 0.42 7.43 7.67 -96.74 -0.74 6.69 16
33 H 0.13 1.08 7.69 -2.39 -0.02 1.06 16
34 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16
35 H 0.42 5.52 6.16 -92.71 -0.57 4.95 16
36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16
38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.04 1.42 4.98 -2.39 -0.01 1.41 16
40 H 0.07 1.36 6.86 -2.38 -0.02 1.34 16
41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
42 H 0.08 1.90 6.82 -2.39 -0.02 1.89 16
43 H 0.01 0.38 6.69 -2.38 -0.02 0.36 16
44 H 0.05 2.45 6.04 -2.39 -0.01 2.44 16
45 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16
46 H 0.02 0.83 6.69 -2.39 -0.02 0.81 16
47 H 0.04 1.78 7.94 -2.39 -0.02 1.76 16
48 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16
49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
Total: -1.00 -80.50 392.94 -2.64 -83.13
By element:
Atomic # 1 Polarization: 13.64 SS G_CDS: -0.35 Total: 13.29 kcal
Atomic # 6 Polarization: -4.95 SS G_CDS: 5.83 Total: 0.88 kcal
Atomic # 7 Polarization: -111.02 SS G_CDS: -5.25 Total: -116.27 kcal
Atomic # 8 Polarization: -60.49 SS G_CDS: -4.59 Total: -65.08 kcal
Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal
Atomic # 16 Polarization: 38.35 SS G_CDS: -0.31 Total: 38.04 kcal
Total: -80.50 -2.64 -83.13 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270885167.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.929 kcal
(2) G-P(sol) polarization free energy of solvation -80.497 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.063 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds