Wall clock time and date at job start Wed Apr 1 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81400 * 109.47259 * 2 1 4 4 O 1.42102 * 110.54611 * 68.37632 * 3 2 1 5 5 O 1.42102 * 110.54223 * 291.62384 * 3 2 1 6 6 N 1.65600 * 104.45217 * 180.02562 * 3 2 1 7 7 C 1.46501 * 119.99868 * 64.99741 * 6 3 2 8 8 C 1.50700 * 109.46850 * 165.00040 * 7 6 3 9 9 O 1.21284 * 120.00178 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99806 * 180.27570 * 10 8 7 12 12 C 1.53000 * 109.47010 * 179.72853 * 11 10 8 13 13 C 1.52997 * 109.46251 * 60.02943 * 12 11 10 14 14 C 1.53039 * 109.45918 * 300.06786 * 12 11 10 15 15 C 1.53194 * 109.31386 * 178.61689 * 14 12 11 16 16 N 1.46925 * 108.77707 * 54.63515 * 15 14 12 17 17 C 1.36935 * 120.63227 * 126.41254 * 16 15 14 18 18 H 1.08000 * 120.00045 * 207.65692 * 17 16 15 19 19 C 1.38807 * 119.99791 * 27.66369 * 17 16 15 20 20 N 1.31621 * 120.00424 * 17.37542 * 19 17 16 21 21 Si 1.86806 * 119.99910 * 197.37585 * 19 17 16 22 22 H 1.48499 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47085 * 119.99644 * 21 19 17 24 24 H 1.48500 * 109.46792 * 239.99733 * 21 19 17 25 25 C 1.46930 * 118.73652 * 306.39281 * 16 15 14 26 26 C 1.53038 * 109.45922 * 180.02562 * 12 11 10 27 27 H 1.08999 * 109.47447 * 59.99660 * 1 2 3 28 28 H 1.08994 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47310 * 300.00178 * 1 2 3 30 30 H 1.08996 * 109.47589 * 239.99839 * 2 1 3 31 31 H 1.09004 * 109.47475 * 119.99860 * 2 1 3 32 32 H 0.97003 * 120.00066 * 245.00141 * 6 3 2 33 33 H 1.09002 * 109.47164 * 45.00237 * 7 6 3 34 34 H 1.08996 * 109.47007 * 285.00062 * 7 6 3 35 35 H 0.96994 * 120.00202 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47261 * 299.72716 * 11 10 8 37 37 H 1.08997 * 109.46909 * 59.73076 * 11 10 8 38 38 H 1.08996 * 109.47030 * 59.99661 * 13 12 11 39 39 H 1.09000 * 109.47578 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46976 * 300.00265 * 13 12 11 41 41 H 1.08996 * 109.50008 * 298.56331 * 14 12 11 42 42 H 1.08998 * 109.49697 * 58.66557 * 14 12 11 43 43 H 1.09005 * 109.58390 * 294.84461 * 15 14 12 44 44 H 1.08998 * 109.58578 * 174.42352 * 15 14 12 45 45 H 0.97001 * 120.00341 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58989 * 293.82028 * 25 16 15 47 47 H 1.08996 * 109.70146 * 173.46159 * 25 16 15 48 48 H 1.08999 * 109.49674 * 301.33327 * 26 12 11 49 49 H 1.08999 * 109.50309 * 61.43056 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8386 2.3439 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4665 0.9672 -1.1510 8 6 5.9392 1.2790 -1.0793 9 8 6.3759 1.9357 -0.1579 10 7 6.7711 0.8271 -2.0386 11 6 8.2037 1.1251 -1.9658 12 6 8.9171 0.4953 -3.1638 13 6 8.3423 1.0707 -4.4596 14 6 8.7080 -1.0206 -3.1425 15 6 9.3944 -1.6439 -4.3620 16 7 10.8039 -1.2294 -4.3747 17 6 11.8046 -2.1611 -4.4492 18 1 12.7750 -1.9463 -4.0268 19 6 11.5717 -3.3818 -5.0677 20 7 10.5383 -3.5265 -5.8700 21 14 12.7248 -4.8191 -4.7615 22 1 13.8003 -4.4005 -3.8270 23 1 11.9634 -5.9465 -4.1659 24 1 13.3270 -5.2532 -6.0476 25 6 11.1193 0.2041 -4.3063 26 6 10.4136 0.8061 -3.0871 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.2988 1.8764 0.7605 33 1 4.0528 1.3771 -2.0723 34 1 4.3227 -0.1131 -1.1372 35 1 6.4219 0.3016 -2.7753 36 1 8.3515 2.2049 -1.9814 37 1 8.6134 0.7155 -1.0425 38 1 8.4904 2.1504 -4.4748 39 1 8.8501 0.6218 -5.3133 40 1 7.2763 0.8495 -4.5140 41 1 9.1394 -1.4347 -2.2312 42 1 7.6410 -1.2411 -3.1734 43 1 8.9041 -1.3000 -5.2728 44 1 9.3336 -2.7304 -4.2999 45 1 10.3753 -4.3796 -6.3019 46 1 10.7697 0.6988 -5.2125 47 1 12.1964 0.3390 -4.2086 48 1 10.5609 1.8861 -3.0785 49 1 10.8287 0.3747 -2.1763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270885167.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:58 Heat of formation + Delta-G solvation = -124.063118 kcal Electronic energy + Delta-G solvation = -29180.647166 eV Core-core repulsion = 25076.031463 eV Total energy + Delta-G solvation = -4104.615704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14329 -39.88852 -38.20590 -37.05900 -36.67703 -35.65730 -34.68220 -33.99702 -32.69151 -31.54337 -29.27468 -28.40729 -27.16960 -25.47219 -24.92107 -23.88317 -22.47049 -21.55647 -20.36831 -19.64771 -19.20481 -18.37463 -17.98736 -17.47015 -17.18403 -16.78906 -16.75598 -16.62667 -15.86309 -15.68289 -15.47235 -15.22205 -15.09186 -14.99118 -14.53898 -14.39383 -14.26767 -14.02777 -13.88906 -13.39578 -13.32977 -13.23923 -13.15421 -13.13277 -13.07871 -12.94140 -12.64599 -12.55945 -12.36246 -12.30797 -12.20318 -11.86448 -11.76738 -11.59074 -11.43681 -11.21287 -11.02283 -10.95400 -10.51666 -10.46769 -10.05283 -8.60662 -7.84764 -5.27733 -0.75981 1.45516 1.48619 1.57675 1.57992 1.63219 2.24646 2.52781 2.82998 3.23248 3.28993 3.57944 3.75254 3.75591 3.84500 3.90620 3.95491 3.98897 4.27688 4.34577 4.42918 4.45113 4.55024 4.58859 4.66036 4.75070 4.76347 4.82873 4.87943 4.89733 4.89951 4.99933 5.10711 5.15651 5.17844 5.30670 5.35519 5.43826 5.44222 5.54784 5.59376 5.70351 5.90288 5.92180 6.43178 6.53957 7.19148 7.20038 7.92828 8.42376 9.20797 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018859 B = 0.002061 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.369779 B =13582.788872 C =14368.628658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.606 4.606 3 S 2.616 3.384 4 O -0.998 6.998 5 O -0.992 6.992 6 N -1.114 6.114 7 C 0.089 3.911 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.710 5.710 11 C 0.141 3.859 12 C -0.054 4.054 13 C -0.138 4.138 14 C -0.116 4.116 15 C 0.177 3.823 16 N -0.610 5.610 17 C -0.259 4.259 18 H 0.060 0.940 19 C -0.049 4.049 20 N -0.931 5.931 21 Si 0.960 3.040 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.294 1.294 25 C 0.142 3.858 26 C -0.113 4.113 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.423 0.577 33 H 0.127 0.873 34 H 0.142 0.858 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.008 0.992 44 H 0.048 0.952 45 H 0.249 0.751 46 H 0.021 0.979 47 H 0.045 0.955 48 H 0.079 0.921 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.230 6.061 9.631 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.740 4.740 3 S 2.713 3.287 4 O -0.988 6.988 5 O -0.982 6.982 6 N -0.875 5.875 7 C -0.041 4.041 8 C 0.293 3.707 9 O -0.459 6.459 10 N -0.363 5.363 11 C 0.017 3.983 12 C -0.055 4.055 13 C -0.195 4.195 14 C -0.155 4.155 15 C 0.051 3.949 16 N -0.334 5.334 17 C -0.389 4.389 18 H 0.078 0.922 19 C -0.244 4.244 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.216 1.216 24 H -0.221 1.221 25 C 0.017 3.983 26 C -0.152 4.152 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.182 0.818 31 H 0.175 0.825 32 H 0.259 0.741 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.254 0.746 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.489 7.183 10.021 23.062 hybrid contribution 1.243 -1.623 -0.164 2.051 sum -18.246 5.560 9.856 21.471 Atomic orbital electron populations 1.21704 0.90281 1.06524 1.03677 1.30304 1.07326 1.21726 1.14618 1.04737 0.72333 0.78903 0.72720 1.93561 1.83337 1.75392 1.46522 1.93558 1.83623 1.74456 1.46606 1.55310 1.25781 1.78579 1.27874 1.21424 0.89184 1.02349 0.91113 1.20925 0.89444 0.78751 0.81539 1.90693 1.78440 1.41094 1.35637 1.45936 1.08023 1.55232 1.27140 1.21290 0.79627 0.99750 0.97657 1.20566 0.95104 0.95043 0.94778 1.21886 1.00865 1.00538 0.96227 1.22053 1.00042 0.94510 0.98880 1.20636 0.82839 0.98072 0.93326 1.44313 1.02388 1.00976 1.85719 1.19494 0.94172 0.96024 1.29235 0.92209 1.25674 0.99882 1.01812 0.97072 1.70167 1.32105 1.24259 1.31208 0.85319 0.78734 0.79921 0.77135 1.19571 1.21602 1.22085 1.21037 0.97444 0.84355 0.95490 1.21883 0.94296 1.00378 0.98666 0.90733 0.87830 0.91164 0.81806 0.82512 0.74063 0.85524 0.84025 0.74590 0.91535 0.92564 0.91906 0.93599 0.91253 0.93828 0.90498 0.97373 0.93375 0.94174 0.96066 0.93664 0.90268 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.92 71.98 0.71 -0.26 16 2 C -0.61 -2.98 6.79 71.98 0.49 -2.49 16 3 S 2.62 38.35 5.46 -56.49 -0.31 38.04 16 4 O -1.00 -22.93 18.08 -127.65 -2.31 -25.23 16 5 O -0.99 -21.15 17.49 -127.65 -2.23 -23.39 16 6 N -1.11 -16.19 5.82 -190.79 -1.11 -17.30 16 7 C 0.09 1.00 6.61 85.63 0.57 1.56 16 8 C 0.51 9.96 7.90 87.66 0.69 10.65 16 9 O -0.58 -16.41 15.73 -3.04 -0.05 -16.46 16 10 N -0.71 -12.82 4.95 -463.05 -2.29 -15.12 16 11 C 0.14 3.25 4.56 86.38 0.39 3.64 16 12 C -0.05 -1.44 0.53 -52.16 -0.03 -1.46 16 13 C -0.14 -3.39 7.54 71.98 0.54 -2.84 16 14 C -0.12 -3.64 4.75 30.67 0.15 -3.49 16 15 C 0.18 7.69 4.84 86.36 0.42 8.11 16 16 N -0.61 -28.97 2.99 -699.08 -2.09 -31.06 16 17 C -0.26 -13.88 9.59 84.03 0.81 -13.07 16 18 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 19 C -0.05 -2.66 4.91 84.86 0.42 -2.25 16 20 N -0.93 -53.03 11.19 21.65 0.24 -52.79 16 21 Si 0.96 43.98 29.59 68.60 2.03 46.01 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 C 0.14 5.51 6.05 86.36 0.52 6.04 16 26 C -0.11 -3.40 4.91 30.67 0.15 -3.25 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.46 8.14 -2.38 -0.02 0.45 16 30 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.42 7.43 7.67 -96.74 -0.74 6.69 16 33 H 0.13 1.08 7.69 -2.39 -0.02 1.06 16 34 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.42 5.52 6.16 -92.71 -0.57 4.95 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.42 4.98 -2.39 -0.01 1.41 16 40 H 0.07 1.36 6.86 -2.38 -0.02 1.34 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.08 1.90 6.82 -2.39 -0.02 1.89 16 43 H 0.01 0.38 6.69 -2.38 -0.02 0.36 16 44 H 0.05 2.45 6.04 -2.39 -0.01 2.44 16 45 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 46 H 0.02 0.83 6.69 -2.39 -0.02 0.81 16 47 H 0.04 1.78 7.94 -2.39 -0.02 1.76 16 48 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -80.50 392.94 -2.64 -83.13 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.35 Total: 13.29 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.83 Total: 0.88 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -5.25 Total: -116.27 kcal Atomic # 8 Polarization: -60.49 SS G_CDS: -4.59 Total: -65.08 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 38.35 SS G_CDS: -0.31 Total: 38.04 kcal Total: -80.50 -2.64 -83.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270885167.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.929 kcal (2) G-P(sol) polarization free energy of solvation -80.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds