Wall clock time and date at job start Wed Apr 1 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81393 * 109.47318 * 2 1 4 4 O 1.42097 * 110.54569 * 68.36941 * 3 2 1 5 5 O 1.42102 * 110.54168 * 291.62100 * 3 2 1 6 6 N 1.65598 * 104.45164 * 180.02562 * 3 2 1 7 7 C 1.46494 * 120.00577 * 64.99174 * 6 3 2 8 8 H 1.09002 * 109.46979 * 335.00636 * 7 6 3 9 9 C 1.53009 * 109.46928 * 95.00220 * 7 6 3 10 10 C 1.50692 * 109.47690 * 215.00333 * 7 6 3 11 11 O 1.21287 * 119.99877 * 0.02562 * 10 7 6 12 12 N 1.34775 * 120.00186 * 180.02562 * 10 7 6 13 13 C 1.46506 * 120.00230 * 180.02562 * 12 10 7 14 14 H 1.09001 * 110.91226 * 37.44298 * 13 12 10 15 15 C 1.54903 * 111.00241 * 273.54389 * 13 12 10 16 16 N 1.47421 * 104.83315 * 278.93451 * 15 13 12 17 17 C 1.36939 * 125.64858 * 155.85141 * 16 15 13 18 18 H 1.07996 * 119.99982 * 353.90110 * 17 16 15 19 19 C 1.38817 * 119.99954 * 173.89711 * 17 16 15 20 20 N 1.31613 * 119.99986 * 6.83731 * 19 17 16 21 21 Si 1.86797 * 119.99814 * 186.83100 * 19 17 16 22 22 H 1.48505 * 109.47109 * 94.99070 * 21 19 17 23 23 H 1.48503 * 109.46980 * 214.98572 * 21 19 17 24 24 H 1.48496 * 109.47373 * 334.98809 * 21 19 17 25 25 C 1.47020 * 108.70220 * 335.86868 * 16 15 13 26 26 C 1.54319 * 107.27295 * 1.06565 * 25 16 15 27 27 C 1.52995 * 110.72534 * 140.55344 * 26 25 16 28 28 C 1.53005 * 110.71851 * 263.64988 * 26 25 16 29 29 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47259 * 300.00670 * 1 2 3 31 31 H 1.09005 * 109.46821 * 60.00334 * 1 2 3 32 32 H 1.09001 * 109.47259 * 239.99329 * 2 1 3 33 33 H 1.09005 * 109.46821 * 119.99666 * 2 1 3 34 34 H 0.97000 * 119.99837 * 245.00226 * 6 3 2 35 35 H 1.08992 * 109.46908 * 60.00316 * 9 7 6 36 36 H 1.08999 * 109.46872 * 180.02562 * 9 7 6 37 37 H 1.09003 * 109.47021 * 300.00602 * 9 7 6 38 38 H 0.96999 * 120.00281 * 359.97438 * 12 10 7 39 39 H 1.09002 * 110.36741 * 160.09292 * 15 13 12 40 40 H 1.09003 * 110.36584 * 37.77033 * 15 13 12 41 41 H 0.97001 * 120.00020 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.87818 * 120.47590 * 25 16 15 43 43 H 1.08994 * 109.88526 * 241.48611 * 25 16 15 44 44 H 1.09008 * 109.47117 * 61.45203 * 27 26 25 45 45 H 1.09004 * 109.47460 * 181.45360 * 27 26 25 46 46 H 1.08995 * 109.46875 * 301.45110 * 27 26 25 47 47 H 1.09000 * 109.47179 * 58.54318 * 28 26 25 48 48 H 1.09002 * 109.47509 * 178.54514 * 28 26 25 49 49 H 1.09001 * 109.47135 * 298.54880 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3438 1.2369 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5652 -0.0007 7 6 4.4667 0.9670 -1.1508 8 1 3.7806 0.3011 -1.6743 9 6 4.9288 2.0732 -2.1015 10 6 5.6618 0.1829 -0.6738 11 8 5.9182 0.1286 0.5104 12 7 6.4459 -0.4581 -1.5631 13 6 7.6075 -1.2209 -1.0993 14 1 7.3899 -1.7282 -0.1594 15 6 8.8521 -0.3089 -0.9628 16 7 9.3859 -0.1913 -2.3319 17 6 10.1607 0.8358 -2.8010 18 1 10.3473 1.6989 -2.1793 19 6 10.7062 0.7674 -4.0757 20 7 10.3717 -0.2169 -4.8828 21 14 11.9149 2.0727 -4.6455 22 1 13.3025 1.5987 -4.4106 23 1 11.7185 2.3303 -6.0947 24 1 11.6846 3.3267 -3.8842 25 6 8.9484 -1.3593 -3.1103 26 6 8.0778 -2.2299 -2.1801 27 6 6.8814 -2.8056 -2.9403 28 6 8.9091 -3.3514 -1.5538 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.2988 1.8763 0.7605 35 1 5.6148 2.7390 -1.5781 36 1 5.4361 1.6281 -2.9575 37 1 4.0643 2.6404 -2.4466 38 1 6.2407 -0.4150 -2.5101 39 1 9.5901 -0.7698 -0.3061 40 1 8.5643 0.6713 -0.5824 41 1 10.7526 -0.2645 -5.7736 42 1 8.3616 -1.0335 -3.9693 43 1 9.8160 -1.9261 -3.4477 44 1 7.2377 -3.4416 -3.7508 45 1 6.2674 -3.3949 -2.2592 46 1 6.2867 -1.9906 -3.3527 47 1 9.7379 -2.9195 -0.9928 48 1 8.2817 -3.9371 -0.8819 49 1 9.3001 -3.9966 -2.3405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276586734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:02 Heat of formation + Delta-G solvation = -86.947181 kcal Electronic energy + Delta-G solvation = -30479.243694 eV Core-core repulsion = 26376.237458 eV Total energy + Delta-G solvation = -4103.006236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.15240 -38.29562 -37.32208 -36.18835 -35.46732 -33.98557 -33.53026 -33.08385 -31.14051 -29.98549 -27.79884 -26.77702 -25.79560 -24.53082 -24.41599 -23.20512 -20.79822 -19.88187 -19.60579 -18.84864 -18.21230 -17.29509 -16.80524 -16.59611 -16.23308 -15.93629 -15.20574 -15.05754 -14.61368 -14.46495 -14.02033 -13.76466 -13.59217 -13.57133 -13.40219 -13.06963 -12.89776 -12.75905 -12.52213 -12.34718 -12.28516 -12.20436 -11.99896 -11.97241 -11.87239 -11.86460 -11.71066 -11.46234 -11.22899 -10.99611 -10.92622 -10.81583 -10.36210 -10.28886 -10.06383 -10.02489 -9.88012 -9.58701 -9.45280 -8.79408 -8.58244 -6.85747 -5.77861 -3.09062 -0.01136 2.38453 2.67726 3.29392 3.37420 3.43937 3.44680 3.57314 3.89289 4.21486 4.38037 4.46441 4.52884 4.70172 4.81033 4.93890 4.94545 5.12207 5.21269 5.25120 5.31700 5.33110 5.48711 5.51144 5.56109 5.73869 5.77135 5.83059 5.88216 5.95031 6.07226 6.14717 6.20960 6.24002 6.37174 6.46709 6.55061 6.63815 6.69804 6.79147 6.94731 7.45396 7.54836 7.71312 7.76663 8.19828 8.33606 9.17418 9.77401 10.43432 11.34253 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.003025 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.662845 B = 9253.535818 C =10245.298022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.614 3.386 4 O -0.956 6.956 5 O -0.951 6.951 6 N -1.099 6.099 7 C 0.136 3.864 8 H 0.103 0.897 9 C -0.169 4.169 10 C 0.508 3.492 11 O -0.539 6.539 12 N -0.697 5.697 13 C 0.138 3.862 14 H 0.088 0.912 15 C 0.127 3.873 16 N -0.602 5.602 17 C -0.225 4.225 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.188 3.812 26 C -0.103 4.103 27 C -0.128 4.128 28 C -0.126 4.126 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.427 0.573 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.403 0.597 39 H 0.027 0.973 40 H 0.042 0.958 41 H 0.252 0.748 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.263 -4.797 6.262 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.705 3.295 4 O -0.946 6.946 5 O -0.941 6.941 6 N -0.860 5.860 7 C 0.024 3.976 8 H 0.121 0.879 9 C -0.228 4.228 10 C 0.291 3.709 11 O -0.417 6.417 12 N -0.348 5.348 13 C 0.032 3.968 14 H 0.106 0.894 15 C 0.000 4.000 16 N -0.328 5.328 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.063 3.937 26 C -0.105 4.105 27 C -0.186 4.186 28 C -0.184 4.184 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.240 0.760 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.537 -4.033 6.755 19.221 hybrid contribution 1.134 0.002 -0.548 1.259 sum -16.403 -4.032 6.207 17.996 Atomic orbital electron populations 1.21496 0.90390 1.05110 1.03472 1.30545 1.07331 1.26770 1.11894 1.04991 0.72820 0.77231 0.74450 1.93612 1.82938 1.72998 1.45062 1.93618 1.83281 1.71820 1.45390 1.55439 1.25611 1.77032 1.27870 1.20629 0.94328 0.95580 0.87017 0.87888 1.22289 1.03278 0.98442 0.98774 1.20493 0.84216 0.79524 0.86663 1.90679 1.72715 1.61814 1.16474 1.45892 1.27674 1.50861 1.10391 1.22197 0.85215 0.92288 0.97071 0.89444 1.21916 0.92031 0.97126 0.88961 1.44426 1.59893 1.23014 1.05515 1.19040 1.21787 0.96314 0.98229 0.90590 1.24772 1.00334 0.98401 0.96694 1.69942 1.46315 1.32834 1.07713 0.86150 0.81439 0.80769 0.77739 1.21693 1.21819 1.20696 1.21290 0.95270 0.86389 0.90719 1.22195 0.96560 0.95361 0.96372 1.21677 0.96977 1.00206 0.99731 1.21673 0.99389 0.97042 1.00248 0.89986 0.90954 0.90870 0.85130 0.84656 0.73636 0.91057 0.90353 0.89856 0.75995 0.95495 0.93984 0.93795 0.93861 0.93283 0.92262 0.93369 0.93056 0.92220 0.93615 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.92 37.16 0.37 -0.51 16 2 C -0.64 -4.21 6.68 37.16 0.25 -3.96 16 3 S 2.61 25.86 5.38 -107.50 -0.58 25.29 16 4 O -0.96 -12.51 18.08 -57.54 -1.04 -13.55 16 5 O -0.95 -11.75 17.11 -57.54 -0.98 -12.73 16 6 N -1.10 -11.62 5.15 -5.88 -0.03 -11.65 16 7 C 0.14 1.47 3.09 -69.08 -0.21 1.26 16 8 H 0.10 0.76 7.15 -51.93 -0.37 0.39 16 9 C -0.17 -1.95 9.41 37.16 0.35 -1.60 16 10 C 0.51 7.07 7.22 -10.99 -0.08 6.99 16 11 O -0.54 -9.05 15.74 5.55 0.09 -8.96 16 12 N -0.70 -9.99 4.57 -51.73 -0.24 -10.23 16 13 C 0.14 2.25 2.56 -65.78 -0.17 2.08 16 14 H 0.09 1.40 7.63 -51.93 -0.40 1.01 16 15 C 0.13 2.56 6.61 -2.53 -0.02 2.54 16 16 N -0.60 -14.24 3.39 -170.08 -0.58 -14.82 16 17 C -0.23 -6.02 10.26 -15.06 -0.15 -6.17 16 18 H 0.08 2.02 7.84 -52.49 -0.41 1.60 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -25.58 10.36 55.49 0.57 -25.01 16 21 Si 0.91 21.59 29.56 -169.99 -5.02 16.57 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.19 4.06 4.55 -3.07 -0.01 4.05 16 26 C -0.10 -1.67 0.80 -152.68 -0.12 -1.79 16 27 C -0.13 -1.68 8.15 37.16 0.30 -1.38 16 28 C -0.13 -1.86 8.44 37.16 0.31 -1.55 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.13 0.64 7.44 -51.92 -0.39 0.26 16 33 H 0.14 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.43 4.74 8.17 -34.47 -0.28 4.46 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.88 7.56 -51.93 -0.39 0.49 16 37 H 0.08 0.93 7.42 -51.93 -0.39 0.55 16 38 H 0.40 5.37 6.23 -40.82 -0.25 5.12 16 39 H 0.03 0.55 7.73 -51.93 -0.40 0.15 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.04 1.03 7.23 -51.93 -0.38 0.65 16 43 H 0.05 1.22 7.06 -51.93 -0.37 0.85 16 44 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.63 6.21 -51.93 -0.32 0.31 16 47 H 0.06 0.96 7.47 -51.93 -0.39 0.57 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -34.29 398.72 -9.18 -43.47 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.10 Total: 5.90 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 0.72 Total: -0.29 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.27 Total: -61.70 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.94 Total: -35.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 25.86 SS G_CDS: -0.58 Total: 25.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.29 -9.18 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276586734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.482 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds