Wall clock time and date at job start Wed Apr 1 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81393 * 109.47318 * 2 1 4 4 O 1.42097 * 110.54569 * 68.36941 * 3 2 1 5 5 O 1.42102 * 110.54168 * 291.62100 * 3 2 1 6 6 N 1.65598 * 104.45164 * 180.02562 * 3 2 1 7 7 C 1.46494 * 120.00577 * 64.99174 * 6 3 2 8 8 H 1.09002 * 109.46979 * 335.00636 * 7 6 3 9 9 C 1.53009 * 109.46928 * 95.00220 * 7 6 3 10 10 C 1.50692 * 109.47690 * 215.00333 * 7 6 3 11 11 O 1.21287 * 119.99877 * 0.02562 * 10 7 6 12 12 N 1.34775 * 120.00186 * 180.02562 * 10 7 6 13 13 C 1.46506 * 120.00230 * 180.02562 * 12 10 7 14 14 H 1.09001 * 110.91226 * 37.44298 * 13 12 10 15 15 C 1.54903 * 111.00241 * 273.54389 * 13 12 10 16 16 N 1.47421 * 104.83315 * 278.93451 * 15 13 12 17 17 C 1.36939 * 125.64858 * 155.85141 * 16 15 13 18 18 H 1.07996 * 119.99982 * 353.90110 * 17 16 15 19 19 C 1.38817 * 119.99954 * 173.89711 * 17 16 15 20 20 N 1.31613 * 119.99986 * 6.83731 * 19 17 16 21 21 Si 1.86797 * 119.99814 * 186.83100 * 19 17 16 22 22 H 1.48505 * 109.47109 * 94.99070 * 21 19 17 23 23 H 1.48503 * 109.46980 * 214.98572 * 21 19 17 24 24 H 1.48496 * 109.47373 * 334.98809 * 21 19 17 25 25 C 1.47020 * 108.70220 * 335.86868 * 16 15 13 26 26 C 1.54319 * 107.27295 * 1.06565 * 25 16 15 27 27 C 1.52995 * 110.72534 * 140.55344 * 26 25 16 28 28 C 1.53005 * 110.71851 * 263.64988 * 26 25 16 29 29 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47259 * 300.00670 * 1 2 3 31 31 H 1.09005 * 109.46821 * 60.00334 * 1 2 3 32 32 H 1.09001 * 109.47259 * 239.99329 * 2 1 3 33 33 H 1.09005 * 109.46821 * 119.99666 * 2 1 3 34 34 H 0.97000 * 119.99837 * 245.00226 * 6 3 2 35 35 H 1.08992 * 109.46908 * 60.00316 * 9 7 6 36 36 H 1.08999 * 109.46872 * 180.02562 * 9 7 6 37 37 H 1.09003 * 109.47021 * 300.00602 * 9 7 6 38 38 H 0.96999 * 120.00281 * 359.97438 * 12 10 7 39 39 H 1.09002 * 110.36741 * 160.09292 * 15 13 12 40 40 H 1.09003 * 110.36584 * 37.77033 * 15 13 12 41 41 H 0.97001 * 120.00020 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.87818 * 120.47590 * 25 16 15 43 43 H 1.08994 * 109.88526 * 241.48611 * 25 16 15 44 44 H 1.09008 * 109.47117 * 61.45203 * 27 26 25 45 45 H 1.09004 * 109.47460 * 181.45360 * 27 26 25 46 46 H 1.08995 * 109.46875 * 301.45110 * 27 26 25 47 47 H 1.09000 * 109.47179 * 58.54318 * 28 26 25 48 48 H 1.09002 * 109.47509 * 178.54514 * 28 26 25 49 49 H 1.09001 * 109.47135 * 298.54880 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3438 1.2369 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5652 -0.0007 7 6 4.4667 0.9670 -1.1508 8 1 3.7806 0.3011 -1.6743 9 6 4.9288 2.0732 -2.1015 10 6 5.6618 0.1829 -0.6738 11 8 5.9182 0.1286 0.5104 12 7 6.4459 -0.4581 -1.5631 13 6 7.6075 -1.2209 -1.0993 14 1 7.3899 -1.7282 -0.1594 15 6 8.8521 -0.3089 -0.9628 16 7 9.3859 -0.1913 -2.3319 17 6 10.1607 0.8358 -2.8010 18 1 10.3473 1.6989 -2.1793 19 6 10.7062 0.7674 -4.0757 20 7 10.3717 -0.2169 -4.8828 21 14 11.9149 2.0727 -4.6455 22 1 13.3025 1.5987 -4.4106 23 1 11.7185 2.3303 -6.0947 24 1 11.6846 3.3267 -3.8842 25 6 8.9484 -1.3593 -3.1103 26 6 8.0778 -2.2299 -2.1801 27 6 6.8814 -2.8056 -2.9403 28 6 8.9091 -3.3514 -1.5538 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.2988 1.8763 0.7605 35 1 5.6148 2.7390 -1.5781 36 1 5.4361 1.6281 -2.9575 37 1 4.0643 2.6404 -2.4466 38 1 6.2407 -0.4150 -2.5101 39 1 9.5901 -0.7698 -0.3061 40 1 8.5643 0.6713 -0.5824 41 1 10.7526 -0.2645 -5.7736 42 1 8.3616 -1.0335 -3.9693 43 1 9.8160 -1.9261 -3.4477 44 1 7.2377 -3.4416 -3.7508 45 1 6.2674 -3.3949 -2.2592 46 1 6.2867 -1.9906 -3.3527 47 1 9.7379 -2.9195 -0.9928 48 1 8.2817 -3.9371 -0.8819 49 1 9.3001 -3.9966 -2.3405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276586734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:01 Heat of formation + Delta-G solvation = -113.613846 kcal Electronic energy + Delta-G solvation = -30480.400048 eV Core-core repulsion = 26376.237458 eV Total energy + Delta-G solvation = -4104.162589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.38091 -39.64870 -38.20538 -37.06059 -36.42597 -35.64367 -34.41313 -34.02096 -32.93436 -30.98173 -29.31061 -27.97122 -27.54752 -25.74708 -24.94648 -24.60764 -22.31207 -21.16039 -20.39389 -20.10324 -19.18727 -18.86774 -18.11229 -17.42297 -17.32914 -16.91589 -16.52556 -16.20430 -16.08048 -15.63336 -15.17301 -15.06536 -14.85560 -14.57608 -14.46364 -14.14607 -13.90105 -13.74172 -13.60365 -13.45558 -13.38857 -13.23966 -13.22524 -13.11969 -13.02153 -12.87930 -12.80239 -12.71784 -12.61432 -12.44989 -12.36207 -12.01404 -11.83596 -11.68417 -11.67834 -11.56172 -11.12485 -10.94891 -10.67956 -10.47587 -10.02395 -8.81472 -7.84568 -5.16264 -0.75281 1.45512 1.47124 1.53661 1.54985 1.61039 2.23940 2.49658 2.81452 3.20767 3.33863 3.50127 3.61324 3.71392 3.73972 3.81934 3.94580 3.99908 4.04459 4.13833 4.27017 4.41405 4.46502 4.47478 4.73421 4.74043 4.80818 4.82010 4.86613 4.91409 4.92611 4.96830 5.04994 5.08521 5.14261 5.25977 5.27799 5.36891 5.42471 5.52045 5.59992 5.76954 5.83994 5.90410 6.22845 6.58335 7.14760 7.21137 7.80354 8.44859 9.25138 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.003025 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.662845 B = 9253.535818 C =10245.298022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.613 4.613 3 S 2.616 3.384 4 O -0.994 6.994 5 O -0.981 6.981 6 N -1.104 6.104 7 C 0.139 3.861 8 H 0.147 0.853 9 C -0.169 4.169 10 C 0.510 3.490 11 O -0.567 6.567 12 N -0.695 5.695 13 C 0.153 3.847 14 H 0.102 0.898 15 C 0.123 3.877 16 N -0.617 5.617 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.054 4.054 20 N -0.940 5.940 21 Si 0.967 3.033 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.275 1.275 25 C 0.199 3.801 26 C -0.090 4.090 27 C -0.124 4.124 28 C -0.123 4.123 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.422 0.578 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.410 0.590 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.247 0.753 42 H 0.018 0.982 43 H 0.009 0.991 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.259 -6.538 6.445 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.747 4.747 3 S 2.712 3.288 4 O -0.985 6.985 5 O -0.971 6.971 6 N -0.862 5.862 7 C 0.028 3.972 8 H 0.165 0.835 9 C -0.228 4.228 10 C 0.295 3.705 11 O -0.446 6.446 12 N -0.346 5.346 13 C 0.047 3.953 14 H 0.120 0.880 15 C -0.003 4.003 16 N -0.344 5.344 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.248 4.248 20 N -0.589 5.589 21 Si 0.796 3.204 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.200 1.200 25 C 0.075 3.925 26 C -0.092 4.092 27 C -0.181 4.181 28 C -0.181 4.181 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.176 0.824 33 H 0.169 0.831 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.247 0.753 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.538 -5.730 6.947 21.513 hybrid contribution 1.761 0.540 -0.559 1.925 sum -17.777 -5.190 6.388 19.590 Atomic orbital electron populations 1.21687 0.89745 1.06574 1.03792 1.30353 1.07771 1.22451 1.14099 1.04803 0.72228 0.78739 0.73004 1.93559 1.83273 1.75249 1.46427 1.93575 1.83453 1.73998 1.46083 1.55422 1.25829 1.77294 1.27625 1.20721 0.93989 0.95461 0.87008 0.83530 1.22286 1.03083 0.98558 0.98863 1.20974 0.84560 0.78869 0.86082 1.90671 1.73521 1.62663 1.17759 1.45858 1.27016 1.50886 1.10890 1.21957 0.84208 0.91383 0.97793 0.88036 1.22029 0.93882 0.97237 0.87175 1.44634 1.59670 1.22915 1.07149 1.19277 1.22204 0.97019 0.98317 0.91272 1.25438 1.01919 1.00435 0.96967 1.70126 1.47003 1.34143 1.07579 0.85238 0.79206 0.78916 0.77030 1.21847 1.21891 1.20007 1.21064 0.94229 0.85999 0.91237 1.22084 0.96945 0.94855 0.95296 1.21664 0.95782 1.00714 0.99984 1.21657 0.99128 0.96718 1.00599 0.87819 0.91080 0.90462 0.82386 0.83120 0.74184 0.92991 0.90133 0.89382 0.75256 0.95754 0.95672 0.94364 0.96361 0.97253 0.92250 0.90364 0.92309 0.94223 0.90279 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.92 71.98 0.71 -0.67 16 2 C -0.61 -5.83 6.68 71.98 0.48 -5.35 16 3 S 2.62 48.01 5.38 -56.49 -0.30 47.70 16 4 O -0.99 -25.77 18.08 -127.65 -2.31 -28.08 16 5 O -0.98 -23.07 17.11 -127.65 -2.18 -25.26 16 6 N -1.10 -21.88 5.15 -172.53 -0.89 -22.77 16 7 C 0.14 2.72 3.09 44.25 0.14 2.85 16 8 H 0.15 1.56 7.15 -2.39 -0.02 1.54 16 9 C -0.17 -3.74 9.41 71.99 0.68 -3.07 16 10 C 0.51 13.23 7.22 87.65 0.63 13.86 16 11 O -0.57 -18.19 15.74 -3.05 -0.05 -18.24 16 12 N -0.69 -18.60 4.57 -435.97 -1.99 -20.59 16 13 C 0.15 4.76 2.56 46.38 0.12 4.87 16 14 H 0.10 2.98 7.63 -2.39 -0.02 2.96 16 15 C 0.12 5.02 6.61 86.85 0.57 5.59 16 16 N -0.62 -29.90 3.39 -692.01 -2.35 -32.25 16 17 C -0.24 -13.08 10.26 84.03 0.86 -12.22 16 18 H 0.07 3.77 7.84 -2.91 -0.02 3.75 16 19 C -0.05 -2.96 5.48 84.86 0.47 -2.49 16 20 N -0.94 -53.53 10.36 21.65 0.22 -53.31 16 21 Si 0.97 45.14 29.56 68.60 2.03 47.16 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 25 C 0.20 8.76 4.55 86.73 0.39 9.15 16 26 C -0.09 -2.78 0.80 -51.00 -0.04 -2.82 16 27 C -0.12 -2.86 8.15 71.98 0.59 -2.28 16 28 C -0.12 -3.43 8.44 71.98 0.61 -2.82 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.16 0.71 7.44 -2.39 -0.02 0.69 16 33 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.42 9.25 8.17 -96.75 -0.79 8.46 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.73 7.56 -2.39 -0.02 1.71 16 37 H 0.09 1.89 7.42 -2.39 -0.02 1.87 16 38 H 0.41 10.06 6.23 -92.71 -0.58 9.48 16 39 H 0.02 1.01 7.73 -2.39 -0.02 1.00 16 40 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.02 0.88 7.23 -2.38 -0.02 0.87 16 43 H 0.01 0.48 7.06 -2.39 -0.02 0.46 16 44 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.27 6.21 -2.39 -0.01 1.26 16 47 H 0.04 1.24 7.47 -2.39 -0.02 1.22 16 48 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.93 398.72 -2.02 -78.95 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.41 Total: 22.05 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.21 Total: 4.64 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -5.01 Total: -128.92 kcal Atomic # 8 Polarization: -67.03 SS G_CDS: -4.54 Total: -71.57 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -0.30 Total: 47.70 kcal Total: -76.93 -2.02 -78.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276586734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.666 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds