Wall clock time and date at job start Wed Apr 1 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99798 * 2 1 4 4 S 1.65603 * 120.00086 * 180.02562 * 2 1 3 5 5 O 1.42108 * 106.39890 * 336.45255 * 4 2 1 6 6 O 1.42099 * 106.39896 * 203.54155 * 4 2 1 7 7 N 1.65590 * 107.21998 * 89.99564 * 4 2 1 8 8 C 1.47041 * 120.04726 * 90.00160 * 7 4 2 9 9 C 1.53565 * 107.24829 * 229.62479 * 8 7 4 10 10 O 1.42624 * 108.29769 * 304.08618 * 9 8 7 11 11 C 1.42784 * 115.82289 * 64.59564 * 10 9 8 12 12 H 1.09003 * 112.28029 * 69.43662 * 11 10 9 13 13 C 1.54891 * 107.18722 * 192.91745 * 11 10 9 14 14 N 1.47485 * 107.16305 * 93.25746 * 13 11 10 15 15 C 1.46898 * 110.99874 * 237.55238 * 14 13 11 16 16 C 1.53002 * 109.46786 * 174.90147 * 15 14 13 17 17 C 1.53006 * 109.47027 * 174.69910 * 16 15 14 18 18 C 1.50700 * 109.47363 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99459 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99691 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47399 * 60.00551 * 22 20 18 24 24 H 1.48503 * 109.47091 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47306 * 299.99846 * 22 20 18 26 26 C 1.48028 * 108.57691 * 359.82719 * 14 13 11 27 27 C 1.45546 * 120.04760 * 269.97821 * 7 4 2 28 28 H 1.08999 * 110.29261 * 14.39903 * 27 7 4 29 29 H 1.08996 * 109.46664 * 269.99582 * 1 2 3 30 30 H 1.09002 * 109.46997 * 29.99839 * 1 2 3 31 31 H 1.09002 * 109.47259 * 149.99812 * 1 2 3 32 32 H 1.09000 * 109.47001 * 270.00072 * 3 2 1 33 33 H 1.08995 * 109.47082 * 30.00326 * 3 2 1 34 34 H 1.09012 * 109.46911 * 150.00402 * 3 2 1 35 35 H 1.09004 * 109.90212 * 349.06026 * 8 7 4 36 36 H 1.09005 * 109.90131 * 110.18543 * 8 7 4 37 37 H 1.08999 * 109.70130 * 63.79171 * 9 8 7 38 38 H 1.09006 * 109.69856 * 184.38841 * 9 8 7 39 39 H 1.09006 * 109.89661 * 212.64238 * 13 11 10 40 40 H 1.08994 * 109.90172 * 333.87177 * 13 11 10 41 41 H 1.09000 * 109.46894 * 294.89945 * 15 14 13 42 42 H 1.08997 * 109.47521 * 54.90160 * 15 14 13 43 43 H 1.08996 * 109.47593 * 294.70015 * 16 15 14 44 44 H 1.09003 * 109.47287 * 54.70566 * 16 15 14 45 45 H 1.08996 * 109.47020 * 300.00456 * 17 16 15 46 46 H 1.09000 * 109.47043 * 60.00089 * 17 16 15 47 47 H 0.97000 * 119.99549 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.42887 * 264.74677 * 26 14 13 49 49 H 1.09003 * 110.42572 * 142.25837 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 1.4114 -2.4067 0.5436 6 8 3.5759 -1.1569 0.5440 7 7 2.5381 -1.8580 -1.5825 8 6 3.7493 -1.4101 -2.2856 9 6 3.3005 -0.7954 -3.6194 10 8 2.5321 -1.7682 -4.3247 11 6 1.3021 -2.1537 -3.7106 12 1 0.5625 -1.3531 -3.7283 13 6 0.8027 -3.4234 -4.4439 14 7 1.3056 -4.5873 -3.6904 15 6 2.1190 -5.4586 -4.5489 16 6 2.7257 -6.5822 -3.7062 17 6 3.4634 -7.5634 -4.6195 18 6 4.0616 -8.6699 -3.7895 19 1 3.9285 -8.6731 -2.7177 20 6 4.7787 -9.6779 -4.3983 21 7 4.9410 -9.6735 -5.7034 22 14 5.5194 -11.0497 -3.3694 23 1 4.4378 -11.7654 -2.6461 24 1 6.2365 -12.0013 -4.2557 25 1 6.4734 -10.4728 -2.3884 26 6 2.0912 -4.0976 -2.5353 27 6 1.5551 -2.6749 -2.2787 28 1 0.6221 -2.7055 -1.7159 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 2.3791 1.5834 -1.0277 33 1 1.6084 2.0283 0.5139 34 1 3.1500 1.1384 0.5138 35 1 4.2695 -0.6612 -1.6884 36 1 4.4063 -2.2599 -2.4711 37 1 2.6905 0.0879 -3.4301 38 1 4.1745 -0.5194 -4.2094 39 1 -0.2872 -3.4364 -4.4628 40 1 1.1940 -3.4426 -5.4609 41 1 1.4911 -5.8883 -5.3294 42 1 2.9182 -4.8750 -5.0058 43 1 3.4263 -6.1590 -2.9865 44 1 1.9318 -7.1072 -3.1749 45 1 2.7628 -7.9867 -5.3393 46 1 4.2573 -7.0385 -5.1509 47 1 5.4459 -10.3825 -6.1316 48 1 3.1522 -4.0654 -2.7830 49 1 1.9219 -4.7308 -1.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277951241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:34 Heat of formation + Delta-G solvation = -100.227614 kcal Electronic energy + Delta-G solvation = -30654.595333 eV Core-core repulsion = 26551.013214 eV Total energy + Delta-G solvation = -4103.582119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.55629 -37.71436 -37.16454 -36.57841 -36.13049 -35.36346 -33.96649 -32.19868 -30.34995 -28.61112 -28.48826 -27.92171 -25.78688 -25.10066 -23.94284 -22.94782 -21.06277 -20.87723 -19.65349 -19.14594 -18.40089 -17.84826 -17.22615 -16.54362 -16.29862 -16.08026 -15.64690 -15.44610 -14.85183 -14.69159 -14.63901 -14.51795 -14.36557 -13.74630 -13.59693 -13.27799 -13.09049 -13.01060 -12.78668 -12.74336 -12.50194 -12.33345 -12.20243 -12.09050 -11.97992 -11.88570 -11.79605 -11.61152 -11.44197 -11.22362 -10.78030 -10.68316 -10.56755 -10.41660 -10.37008 -9.64738 -9.58666 -9.28649 -9.10803 -9.00761 -8.28828 -8.10352 -5.94520 -3.96287 0.15052 2.38493 3.08272 3.38068 3.39864 3.41592 3.45050 3.85563 4.09869 4.22707 4.27569 4.40544 4.51036 4.56248 4.68325 4.76303 4.79171 4.85740 4.90567 4.92643 5.09177 5.13462 5.26811 5.29910 5.30880 5.41230 5.42025 5.48385 5.55177 5.59085 5.77243 5.79694 5.86317 5.96139 6.03358 6.09668 6.24939 6.36688 6.71682 6.82587 6.95106 7.09176 7.26347 7.36466 7.73822 7.89254 8.06149 8.49668 9.10676 9.67408 11.16937 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002742 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.895007 B =10210.267708 C =10926.347740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.016 6.016 3 C 0.084 3.916 4 S 2.781 3.219 5 O -0.963 6.963 6 O -0.970 6.970 7 N -0.994 5.994 8 C 0.083 3.917 9 C 0.053 3.947 10 O -0.369 6.369 11 C 0.064 3.936 12 H 0.081 0.919 13 C 0.045 3.955 14 N -0.522 5.522 15 C 0.053 3.947 16 C -0.109 4.109 17 C 0.024 3.976 18 C -0.518 4.518 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.041 3.959 27 C 0.113 3.887 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.016 0.984 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.061 0.939 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.580 28.165 7.247 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.857 5.857 3 C -0.061 4.061 4 S 2.790 3.210 5 O -0.947 6.947 6 O -0.954 6.954 7 N -0.833 5.833 8 C -0.043 4.043 9 C -0.025 4.025 10 O -0.287 6.287 11 C 0.004 3.996 12 H 0.099 0.901 13 C -0.083 4.083 14 N -0.247 5.247 15 C -0.075 4.075 16 C -0.147 4.147 17 C -0.014 4.014 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.089 4.089 27 C 0.005 3.995 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.577 27.215 7.883 29.908 hybrid contribution 0.972 0.069 0.077 0.977 sum -8.605 27.284 7.960 29.695 Atomic orbital electron populations 1.21486 0.78124 1.03075 1.02454 1.57835 1.15572 1.22465 1.89855 1.21590 0.97355 0.85271 1.01930 1.02238 0.73217 0.72736 0.72827 1.93644 1.66756 1.58175 1.76100 1.93604 1.40341 1.85157 1.76259 1.57744 1.29217 1.64153 1.32227 1.22255 0.86359 1.01061 0.94581 1.22898 0.96082 0.90665 0.92875 1.87874 1.33286 1.60073 1.47499 1.23714 0.86579 0.97198 0.92113 0.90095 1.23084 1.00574 0.86731 0.97912 1.63864 1.36873 1.15439 1.08508 1.22508 0.94947 0.94446 0.95564 1.21707 0.98898 0.95461 0.98636 1.19048 0.94845 0.92958 0.94528 1.21227 1.32796 1.07952 0.93702 0.92762 1.25020 0.96432 0.98128 0.94903 1.69960 1.41398 1.33656 1.08650 0.86662 0.79365 0.81902 0.80094 1.20216 1.21340 1.20287 1.23205 0.97417 0.92821 0.95438 1.22149 0.91733 0.91437 0.94177 0.86945 0.92159 0.90918 0.91098 0.92804 0.90580 0.89946 0.88318 0.89473 0.92861 0.87577 0.89084 0.90746 0.90861 0.94793 0.93624 0.92481 0.96558 0.96853 0.93022 0.92031 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.29 59.85 0.62 1.16 16 2 N -1.02 -7.61 3.64 -129.20 -0.47 -8.08 16 3 C 0.08 0.44 10.66 59.85 0.64 1.08 16 4 S 2.78 30.92 6.01 -107.50 -0.65 30.28 16 5 O -0.96 -13.61 15.99 -57.17 -0.91 -14.53 16 6 O -0.97 -12.99 15.47 -57.17 -0.88 -13.87 16 7 N -0.99 -10.32 3.12 -105.75 -0.33 -10.65 16 8 C 0.08 0.76 6.29 -3.45 -0.02 0.74 16 9 C 0.05 0.43 7.02 37.45 0.26 0.69 16 10 O -0.37 -4.17 9.98 -35.23 -0.35 -4.52 16 11 C 0.06 0.66 4.01 -24.97 -0.10 0.56 16 12 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 13 C 0.05 0.54 6.56 -2.51 -0.02 0.52 16 14 N -0.52 -7.89 5.28 -231.15 -1.22 -9.11 16 15 C 0.05 0.94 4.63 -3.82 -0.02 0.92 16 16 C -0.11 -2.35 4.81 -26.73 -0.13 -2.47 16 17 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 18 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 19 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 22 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.04 0.60 5.00 -2.58 -0.01 0.58 16 27 C 0.11 1.27 3.09 -67.06 -0.21 1.06 16 28 H 0.11 1.17 7.26 -51.93 -0.38 0.80 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 31 H 0.07 0.41 7.75 -51.93 -0.40 0.01 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 34 H 0.08 0.50 7.02 -51.92 -0.36 0.14 16 35 H 0.10 0.73 7.21 -51.93 -0.37 0.36 16 36 H 0.09 0.92 7.57 -51.93 -0.39 0.53 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.93 7.42 -51.93 -0.39 0.55 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.05 0.98 6.93 -51.93 -0.36 0.62 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.06 0.98 6.46 -51.93 -0.34 0.65 16 49 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -35.89 393.04 -11.16 -47.05 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -8.44 Total: -4.37 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 0.46 Total: -8.58 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -1.29 Total: -54.64 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -2.15 Total: -32.92 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 30.92 SS G_CDS: -0.65 Total: 30.28 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.89 -11.16 -47.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277951241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.173 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds