Wall clock time and date at job start Wed Apr 1 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99798 * 2 1 4 4 S 1.65603 * 120.00086 * 180.02562 * 2 1 3 5 5 O 1.42108 * 106.39890 * 336.45255 * 4 2 1 6 6 O 1.42099 * 106.39896 * 203.54155 * 4 2 1 7 7 N 1.65590 * 107.21998 * 89.99564 * 4 2 1 8 8 C 1.47041 * 120.04726 * 90.00160 * 7 4 2 9 9 C 1.53565 * 107.24829 * 229.62479 * 8 7 4 10 10 O 1.42624 * 108.29769 * 304.08618 * 9 8 7 11 11 C 1.42784 * 115.82289 * 64.59564 * 10 9 8 12 12 H 1.09003 * 112.28029 * 69.43662 * 11 10 9 13 13 C 1.54891 * 107.18722 * 192.91745 * 11 10 9 14 14 N 1.47485 * 107.16305 * 93.25746 * 13 11 10 15 15 C 1.46898 * 110.99874 * 237.55238 * 14 13 11 16 16 C 1.53002 * 109.46786 * 174.90147 * 15 14 13 17 17 C 1.53006 * 109.47027 * 174.69910 * 16 15 14 18 18 C 1.50700 * 109.47363 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99459 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99691 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47399 * 60.00551 * 22 20 18 24 24 H 1.48503 * 109.47091 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47306 * 299.99846 * 22 20 18 26 26 C 1.48028 * 108.57691 * 359.82719 * 14 13 11 27 27 C 1.45546 * 120.04760 * 269.97821 * 7 4 2 28 28 H 1.08999 * 110.29261 * 14.39903 * 27 7 4 29 29 H 1.08996 * 109.46664 * 269.99582 * 1 2 3 30 30 H 1.09002 * 109.46997 * 29.99839 * 1 2 3 31 31 H 1.09002 * 109.47259 * 149.99812 * 1 2 3 32 32 H 1.09000 * 109.47001 * 270.00072 * 3 2 1 33 33 H 1.08995 * 109.47082 * 30.00326 * 3 2 1 34 34 H 1.09012 * 109.46911 * 150.00402 * 3 2 1 35 35 H 1.09004 * 109.90212 * 349.06026 * 8 7 4 36 36 H 1.09005 * 109.90131 * 110.18543 * 8 7 4 37 37 H 1.08999 * 109.70130 * 63.79171 * 9 8 7 38 38 H 1.09006 * 109.69856 * 184.38841 * 9 8 7 39 39 H 1.09006 * 109.89661 * 212.64238 * 13 11 10 40 40 H 1.08994 * 109.90172 * 333.87177 * 13 11 10 41 41 H 1.09000 * 109.46894 * 294.89945 * 15 14 13 42 42 H 1.08997 * 109.47521 * 54.90160 * 15 14 13 43 43 H 1.08996 * 109.47593 * 294.70015 * 16 15 14 44 44 H 1.09003 * 109.47287 * 54.70566 * 16 15 14 45 45 H 1.08996 * 109.47020 * 300.00456 * 17 16 15 46 46 H 1.09000 * 109.47043 * 60.00089 * 17 16 15 47 47 H 0.97000 * 119.99549 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.42887 * 264.74677 * 26 14 13 49 49 H 1.09003 * 110.42572 * 142.25837 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 1.4114 -2.4067 0.5436 6 8 3.5759 -1.1569 0.5440 7 7 2.5381 -1.8580 -1.5825 8 6 3.7493 -1.4101 -2.2856 9 6 3.3005 -0.7954 -3.6194 10 8 2.5321 -1.7682 -4.3247 11 6 1.3021 -2.1537 -3.7106 12 1 0.5625 -1.3531 -3.7283 13 6 0.8027 -3.4234 -4.4439 14 7 1.3056 -4.5873 -3.6904 15 6 2.1190 -5.4586 -4.5489 16 6 2.7257 -6.5822 -3.7062 17 6 3.4634 -7.5634 -4.6195 18 6 4.0616 -8.6699 -3.7895 19 1 3.9285 -8.6731 -2.7177 20 6 4.7787 -9.6779 -4.3983 21 7 4.9410 -9.6735 -5.7034 22 14 5.5194 -11.0497 -3.3694 23 1 4.4378 -11.7654 -2.6461 24 1 6.2365 -12.0013 -4.2557 25 1 6.4734 -10.4728 -2.3884 26 6 2.0912 -4.0976 -2.5353 27 6 1.5551 -2.6749 -2.2787 28 1 0.6221 -2.7055 -1.7159 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 2.3791 1.5834 -1.0277 33 1 1.6084 2.0283 0.5139 34 1 3.1500 1.1384 0.5138 35 1 4.2695 -0.6612 -1.6884 36 1 4.4063 -2.2599 -2.4711 37 1 2.6905 0.0879 -3.4301 38 1 4.1745 -0.5194 -4.2094 39 1 -0.2872 -3.4364 -4.4628 40 1 1.1940 -3.4426 -5.4609 41 1 1.4911 -5.8883 -5.3294 42 1 2.9182 -4.8750 -5.0058 43 1 3.4263 -6.1590 -2.9865 44 1 1.9318 -7.1072 -3.1749 45 1 2.7628 -7.9867 -5.3393 46 1 4.2573 -7.0385 -5.1509 47 1 5.4459 -10.3825 -6.1316 48 1 3.1522 -4.0654 -2.7830 49 1 1.9219 -4.7308 -1.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277951241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:33 Heat of formation + Delta-G solvation = -128.890750 kcal Electronic energy + Delta-G solvation = -30655.838260 eV Core-core repulsion = 26551.013214 eV Total energy + Delta-G solvation = -4104.825046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46347 -38.67278 -38.27848 -37.18209 -37.01405 -36.20883 -35.83192 -33.94350 -31.71045 -29.57308 -29.09568 -28.96953 -27.43108 -25.61645 -24.93601 -24.45268 -22.52038 -21.82736 -21.12061 -19.95938 -19.19456 -18.63895 -18.53513 -17.97917 -17.39771 -17.02865 -16.65137 -16.42072 -16.19475 -15.87096 -15.53760 -15.44853 -15.39938 -14.98986 -14.36654 -14.35910 -14.14869 -14.06709 -14.04570 -13.62069 -13.51567 -13.46026 -13.34429 -13.19577 -13.03086 -12.78262 -12.72882 -12.68764 -12.61322 -12.57559 -12.48288 -12.36010 -12.17557 -11.57925 -11.46406 -11.41385 -11.28255 -11.04815 -10.56822 -10.10853 -9.93077 -9.33641 -8.21949 -6.33100 -0.67913 1.37588 1.41072 1.49062 1.63834 2.30821 2.39245 2.67251 2.92470 3.10701 3.12567 3.36259 3.47609 3.67696 3.83366 3.88471 4.02076 4.06738 4.18961 4.24765 4.32040 4.39357 4.45208 4.49097 4.51993 4.61701 4.67755 4.69623 4.74202 4.80290 4.84647 4.90476 4.93610 4.95739 4.98195 5.02025 5.11171 5.12182 5.19666 5.24331 5.48470 5.59234 5.70634 5.82979 5.94987 6.01828 6.24756 6.26474 6.82737 7.35821 8.89849 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002742 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.895007 B =10210.267708 C =10926.347740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.008 6.008 3 C 0.076 3.924 4 S 2.791 3.209 5 O -1.000 7.000 6 O -0.999 6.999 7 N -0.993 5.993 8 C 0.078 3.922 9 C 0.055 3.945 10 O -0.394 6.394 11 C 0.075 3.925 12 H 0.121 0.879 13 C 0.040 3.960 14 N -0.527 5.527 15 C 0.068 3.932 16 C -0.093 4.093 17 C 0.030 3.970 18 C -0.547 4.547 19 H 0.055 0.945 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.269 1.269 26 C 0.035 3.965 27 C 0.119 3.881 28 H 0.124 0.876 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.040 0.960 44 H 0.052 0.948 45 H -0.005 1.005 46 H -0.011 1.011 47 H 0.265 0.735 48 H 0.041 0.959 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 30.426 7.689 33.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.852 5.852 3 C -0.069 4.069 4 S 2.801 3.199 5 O -0.983 6.983 6 O -0.983 6.983 7 N -0.831 5.831 8 C -0.047 4.047 9 C -0.023 4.023 10 O -0.313 6.313 11 C 0.015 3.985 12 H 0.138 0.862 13 C -0.087 4.087 14 N -0.252 5.252 15 C -0.060 4.060 16 C -0.131 4.131 17 C -0.008 4.008 18 C -0.585 4.585 19 H 0.073 0.927 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.194 1.194 26 C -0.095 4.095 27 C 0.011 3.989 28 H 0.142 0.858 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.013 0.987 46 H 0.007 0.993 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.708 29.494 8.333 32.466 hybrid contribution 1.324 -0.575 -0.064 1.445 sum -9.383 28.919 8.269 31.507 Atomic orbital electron populations 1.21729 0.76694 1.04551 1.03004 1.57546 1.16320 1.21764 1.89521 1.21839 0.96988 0.84439 1.03605 1.01660 0.72448 0.73076 0.72727 1.93590 1.67449 1.60205 1.77077 1.93559 1.42011 1.85669 1.77035 1.57644 1.29521 1.64173 1.31807 1.22383 0.85815 1.00742 0.95797 1.23084 0.96765 0.90656 0.91800 1.87842 1.33971 1.61183 1.48320 1.23767 0.87147 0.97404 0.90177 0.86155 1.23258 1.01961 0.86280 0.97228 1.63789 1.35741 1.17142 1.08492 1.22187 0.94931 0.93768 0.95117 1.21444 0.98185 0.95593 0.97885 1.18926 0.93958 0.93386 0.94525 1.21650 1.33558 1.09143 0.94103 0.92663 1.25970 0.96678 1.00841 0.96204 1.70087 1.41966 1.34702 1.10429 0.85511 0.78712 0.78435 0.78460 1.19158 1.20410 1.19383 1.23168 0.96477 0.95261 0.94578 1.22076 0.91959 0.89343 0.95553 0.85821 0.92229 0.87812 0.91231 0.90564 0.88371 0.91218 0.86538 0.91872 0.89985 0.86214 0.86423 0.91429 0.90807 0.95622 0.94106 0.92946 0.98652 0.99264 0.92658 0.94062 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.29 127.77 1.31 2.04 16 2 N -1.01 -12.64 3.64 -562.67 -2.05 -14.69 16 3 C 0.08 0.57 10.66 127.77 1.36 1.93 16 4 S 2.79 60.13 6.01 -56.49 -0.34 59.79 16 5 O -1.00 -28.28 15.99 -128.00 -2.05 -30.33 16 6 O -1.00 -26.68 15.47 -128.00 -1.98 -28.66 16 7 N -0.99 -19.64 3.12 -488.49 -1.52 -21.16 16 8 C 0.08 1.35 6.29 86.47 0.54 1.89 16 9 C 0.05 0.75 7.02 72.17 0.51 1.25 16 10 O -0.39 -8.12 9.98 -148.98 -1.49 -9.61 16 11 C 0.07 1.33 4.01 31.74 0.13 1.46 16 12 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 13 C 0.04 0.89 6.56 86.84 0.57 1.46 16 14 N -0.53 -15.92 5.28 -885.23 -4.68 -20.60 16 15 C 0.07 2.51 4.63 86.30 0.40 2.91 16 16 C -0.09 -4.19 4.81 30.60 0.15 -4.04 16 17 C 0.03 1.65 4.97 29.85 0.15 1.80 16 18 C -0.55 -32.83 9.11 25.60 0.23 -32.60 16 19 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.00 0.06 5.46 84.65 0.46 0.52 16 21 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 22 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.03 1.05 5.00 86.49 0.43 1.48 16 27 C 0.12 2.54 3.09 46.07 0.14 2.68 16 28 H 0.12 2.38 7.26 -2.39 -0.02 2.36 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.26 8.07 -2.39 -0.02 0.24 16 31 H 0.07 0.63 7.75 -2.39 -0.02 0.61 16 32 H 0.08 0.25 8.14 -2.39 -0.02 0.24 16 33 H 0.10 0.33 8.07 -2.39 -0.02 0.31 16 34 H 0.07 0.73 7.02 -2.38 -0.02 0.71 16 35 H 0.12 1.57 7.21 -2.39 -0.02 1.56 16 36 H 0.06 1.39 7.57 -2.38 -0.02 1.37 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.07 1.61 7.42 -2.39 -0.02 1.59 16 41 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 43 H 0.04 1.84 6.93 -2.39 -0.02 1.82 16 44 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 47 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 48 H 0.04 1.39 6.46 -2.39 -0.02 1.38 16 49 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -80.26 393.04 -4.48 -84.74 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.92 Total: 7.74 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 6.39 Total: -17.22 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -7.96 Total: -114.51 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -5.52 Total: -68.60 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 60.13 SS G_CDS: -0.34 Total: 59.79 kcal Total: -80.26 -4.48 -84.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277951241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.146 kcal (2) G-P(sol) polarization free energy of solvation -80.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds