Wall clock time and date at job start Wed Apr 1 2020 04:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81408 * 109.46577 * 2 1 4 4 O 1.42094 * 108.57811 * 65.51744 * 3 2 1 5 5 O 1.42100 * 108.58031 * 294.48586 * 3 2 1 6 6 C 1.81402 * 101.91621 * 179.97438 * 3 2 1 7 7 C 1.53001 * 109.46918 * 179.97438 * 6 3 2 8 8 N 1.46503 * 109.47455 * 179.97438 * 7 6 3 9 9 C 1.46498 * 119.99991 * 270.00498 * 8 7 6 10 10 C 1.34778 * 119.99891 * 89.99923 * 8 7 6 11 11 O 1.21593 * 119.99912 * 0.02562 * 10 8 7 12 12 N 1.34767 * 120.00119 * 180.02562 * 10 8 7 13 13 C 1.46497 * 120.00147 * 180.02562 * 12 10 8 14 14 C 1.53349 * 109.42224 * 275.12789 * 13 12 10 15 15 C 1.53189 * 109.15350 * 178.67121 * 14 13 12 16 16 N 1.46931 * 108.89061 * 54.57922 * 15 14 13 17 17 C 1.36938 * 120.62972 * 126.29441 * 16 15 14 18 18 H 1.08005 * 120.00173 * 331.83979 * 17 16 15 19 19 C 1.38813 * 119.99936 * 151.83343 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.08512 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.08402 * 19 17 16 22 22 H 1.48500 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46793 * 120.00276 * 21 19 17 24 24 H 1.48498 * 109.46814 * 240.00176 * 21 19 17 25 25 C 1.46927 * 118.74004 * 306.32424 * 16 15 14 26 26 C 1.53047 * 109.46203 * 155.00199 * 13 12 10 27 27 H 1.09003 * 109.46560 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47079 * 299.99772 * 1 2 3 29 29 H 1.08997 * 109.47598 * 60.00443 * 1 2 3 30 30 H 1.08994 * 109.47185 * 240.00570 * 2 1 3 31 31 H 1.08997 * 109.47598 * 119.99556 * 2 1 3 32 32 H 1.09002 * 109.47256 * 60.00792 * 6 3 2 33 33 H 1.08993 * 109.47509 * 299.99834 * 6 3 2 34 34 H 1.09001 * 109.47279 * 60.00072 * 7 6 3 35 35 H 1.09005 * 109.47288 * 300.00580 * 7 6 3 36 36 H 1.09001 * 109.47100 * 269.99644 * 9 8 7 37 37 H 1.08995 * 109.47593 * 29.99730 * 9 8 7 38 38 H 1.09003 * 109.47019 * 149.99698 * 9 8 7 39 39 H 0.97002 * 120.00429 * 0.02562 * 12 10 8 40 40 H 1.08997 * 109.46024 * 35.03189 * 13 12 10 41 41 H 1.09001 * 109.68292 * 58.70764 * 14 13 12 42 42 H 1.08994 * 109.47524 * 298.51588 * 14 13 12 43 43 H 1.09000 * 109.58714 * 294.72587 * 15 14 13 44 44 H 1.09003 * 109.58688 * 174.43867 * 15 14 13 45 45 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.58255 * 173.39566 * 25 16 15 47 47 H 1.09000 * 109.58150 * 293.67300 * 25 16 15 48 48 H 1.09000 * 109.49464 * 61.43529 * 26 13 12 49 49 H 1.08999 * 109.52117 * 301.35281 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7104 0.0000 4 8 1.7591 2.3232 1.2258 5 8 1.7591 2.3233 -1.2258 6 6 3.9328 1.4721 0.0008 7 6 4.6279 2.8351 0.0002 8 7 6.0802 2.6427 0.0015 9 6 6.8054 2.5475 1.2708 10 6 6.7492 2.5533 -1.1652 11 8 6.1473 2.6328 -2.2187 12 7 8.0851 2.3759 -1.1640 13 6 8.8122 2.2792 -2.4321 14 6 8.7648 0.8324 -2.9382 15 6 9.4982 0.7451 -4.2803 16 7 10.8550 1.2847 -4.1170 17 6 11.9484 0.5458 -4.4825 18 1 11.9040 -0.5331 -4.4574 19 6 13.1138 1.1833 -4.8854 20 7 13.0825 2.4513 -5.2369 21 14 14.7265 0.2416 -4.9285 22 1 14.4943 -1.1581 -4.4900 23 1 15.2638 0.2435 -6.3129 24 1 15.7032 0.8907 -4.0175 25 6 11.0164 2.6320 -3.5534 26 6 10.2679 2.7011 -2.2187 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 4.2259 0.9149 -0.8891 33 1 4.2252 0.9151 0.8909 34 1 4.3349 3.3927 0.8898 35 1 4.3354 3.3917 -0.8902 36 1 7.1202 3.5426 1.5850 37 1 6.1534 2.1160 2.0303 38 1 7.6822 1.9129 1.1416 39 1 8.5653 2.3121 -0.3236 40 1 8.3481 2.9360 -3.1679 41 1 7.7278 0.5233 -3.0695 42 1 9.2510 0.1782 -2.2146 43 1 8.9610 1.3276 -5.0288 44 1 9.5547 -0.2958 -4.5987 45 1 13.8969 2.8968 -5.5181 46 1 12.0747 2.8352 -3.3899 47 1 10.6053 3.3684 -4.2439 48 1 10.7399 2.0293 -1.5017 49 1 10.2991 3.7214 -1.8365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323051577.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:21 Heat of formation + Delta-G solvation = -71.949731 kcal Electronic energy + Delta-G solvation = -29156.675586 eV Core-core repulsion = 25054.319689 eV Total energy + Delta-G solvation = -4102.355898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.30789 -37.70149 -37.32478 -36.40461 -35.92265 -34.53942 -33.62856 -32.57087 -31.44020 -30.06249 -29.23686 -27.08472 -25.47899 -24.69508 -23.49458 -22.24484 -21.75182 -19.92777 -19.37374 -19.23701 -18.14334 -17.48846 -16.80258 -16.59686 -16.45499 -16.25064 -15.39177 -15.02900 -14.93309 -14.54574 -14.51386 -13.94439 -13.77616 -13.62932 -13.58503 -13.45732 -13.07194 -12.97959 -12.89541 -12.78550 -12.56597 -12.42150 -12.33193 -12.32202 -12.04060 -11.70008 -11.46986 -11.33439 -11.13565 -10.86270 -10.83779 -10.75059 -10.49975 -10.28817 -10.06871 -10.01993 -9.76917 -9.55531 -9.04391 -8.62490 -8.45850 -6.69803 -5.81032 -3.23288 -0.45899 2.33016 2.54150 3.12990 3.29563 3.35201 3.43299 3.45406 3.60269 3.92890 4.13770 4.18019 4.24157 4.44062 4.47888 4.71591 4.74656 4.85443 5.07089 5.10045 5.16823 5.18338 5.31358 5.34550 5.39545 5.45861 5.46632 5.50052 5.58696 5.87498 6.05081 6.14368 6.26662 6.33284 6.47018 6.54880 6.58350 6.75869 6.81249 6.95626 7.02230 7.30648 7.60589 7.77996 7.97386 8.43163 8.63708 9.19280 9.82497 10.39671 11.27922 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.001994 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.503279 B =14036.300842 C =14475.310473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.613 4.613 3 S 2.420 3.580 4 O -0.939 6.939 5 O -0.929 6.929 6 C -0.634 4.634 7 C 0.149 3.851 8 N -0.632 5.632 9 C 0.076 3.924 10 C 0.701 3.299 11 O -0.583 6.583 12 N -0.736 5.736 13 C 0.166 3.834 14 C -0.138 4.138 15 C 0.147 3.853 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.174 3.826 26 C -0.145 4.145 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.391 0.609 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.055 0.945 45 H 0.254 0.746 46 H 0.092 0.908 47 H 0.022 0.978 48 H 0.058 0.942 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.177 -3.172 17.474 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.743 4.743 3 S 2.601 3.399 4 O -0.936 6.936 5 O -0.926 6.926 6 C -0.764 4.764 7 C 0.023 3.977 8 N -0.371 5.371 9 C -0.067 4.067 10 C 0.402 3.598 11 O -0.460 6.460 12 N -0.391 5.391 13 C 0.062 3.938 14 C -0.179 4.179 15 C 0.020 3.980 16 N -0.316 5.316 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.048 3.952 26 C -0.185 4.185 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.226 0.774 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.919 -2.232 16.602 26.800 hybrid contribution 1.699 -1.450 0.533 2.297 sum -19.220 -3.683 17.135 26.011 Atomic orbital electron populations 1.21523 0.90278 1.04942 1.03821 1.30203 1.07583 1.24812 1.11660 1.08082 0.77994 0.78352 0.75503 1.93586 1.81115 1.73209 1.45694 1.93628 1.80806 1.72906 1.45271 1.30847 1.24709 1.08725 1.12116 1.20857 0.79835 0.92183 1.04815 1.46956 1.06502 1.78229 1.05380 1.21774 0.97315 1.02003 0.85627 1.16002 0.82348 0.77937 0.83496 1.90942 1.67626 1.57822 1.29614 1.45705 1.05384 1.77403 1.10581 1.21022 0.91758 0.97546 0.83442 1.22440 0.99675 0.95778 1.00004 1.20875 0.86609 0.97796 0.92704 1.44102 1.00329 1.15523 1.71620 1.19223 0.90305 0.90132 1.38398 0.91629 1.25066 0.99317 0.96476 0.98896 1.70034 1.26945 1.10640 1.47089 0.86227 0.83964 0.79318 0.77289 1.20293 1.21721 1.21583 1.20746 1.00135 0.86206 0.88159 1.22534 0.93784 0.99659 1.02565 0.90025 0.90811 0.90679 0.84805 0.85049 0.84209 0.84998 0.89041 0.87994 0.92240 0.90818 0.91105 0.77355 0.89942 0.92742 0.92537 0.96102 0.92629 0.93636 0.89022 0.95994 0.92284 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.92 37.16 0.37 -0.39 16 2 C -0.61 -2.77 6.53 37.16 0.24 -2.53 16 3 S 2.42 18.31 4.72 -107.50 -0.51 17.80 16 4 O -0.94 -9.43 18.10 -57.83 -1.05 -10.47 16 5 O -0.93 -11.08 18.10 -57.83 -1.05 -12.13 16 6 C -0.63 -4.45 6.13 37.16 0.23 -4.22 16 7 C 0.15 1.43 5.41 -4.04 -0.02 1.41 16 8 N -0.63 -6.77 2.87 -187.35 -0.54 -7.31 16 9 C 0.08 0.52 10.20 59.85 0.61 1.13 16 10 C 0.70 10.43 8.24 -86.93 -0.72 9.71 16 11 O -0.58 -11.05 15.59 5.28 0.08 -10.97 16 12 N -0.74 -10.33 4.94 -58.48 -0.29 -10.62 16 13 C 0.17 2.89 2.42 -67.73 -0.16 2.72 16 14 C -0.14 -2.51 5.68 -26.45 -0.15 -2.66 16 15 C 0.15 3.16 6.50 -3.71 -0.02 3.13 16 16 N -0.59 -14.71 2.99 -172.32 -0.52 -15.23 16 17 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 18 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 19 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 20 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 21 Si 0.90 21.38 29.59 -169.99 -5.03 16.36 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 26 C -0.15 -2.63 5.55 -26.61 -0.15 -2.77 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.14 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.64 8.07 -51.93 -0.42 0.23 16 35 H 0.10 1.18 7.42 -51.93 -0.39 0.80 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 38 H 0.07 0.44 6.36 -51.93 -0.33 0.11 16 39 H 0.39 4.37 6.33 -40.82 -0.26 4.11 16 40 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 403.81 15.07 6.09 6.09 Total: -1.00 -37.71 403.81 -10.61 -48.32 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.40 Total: 0.91 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.02 Total: 2.56 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.72 Total: -58.46 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -2.01 Total: -33.57 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 18.31 SS G_CDS: -0.51 Total: 17.80 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.71 -10.61 -48.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323051577.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.630 kcal (2) G-P(sol) polarization free energy of solvation -37.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds