Wall clock time and date at job start Wed Apr 1 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81408 * 109.46577 * 2 1 4 4 O 1.42094 * 108.57811 * 65.51744 * 3 2 1 5 5 O 1.42100 * 108.58031 * 294.48586 * 3 2 1 6 6 C 1.81402 * 101.91621 * 179.97438 * 3 2 1 7 7 C 1.53001 * 109.46918 * 179.97438 * 6 3 2 8 8 N 1.46503 * 109.47455 * 179.97438 * 7 6 3 9 9 C 1.46498 * 119.99991 * 270.00498 * 8 7 6 10 10 C 1.34778 * 119.99891 * 89.99923 * 8 7 6 11 11 O 1.21593 * 119.99912 * 0.02562 * 10 8 7 12 12 N 1.34767 * 120.00119 * 180.02562 * 10 8 7 13 13 C 1.46497 * 120.00147 * 180.02562 * 12 10 8 14 14 C 1.53349 * 109.42224 * 275.12789 * 13 12 10 15 15 C 1.53189 * 109.15350 * 178.67121 * 14 13 12 16 16 N 1.46931 * 108.89061 * 54.57922 * 15 14 13 17 17 C 1.36938 * 120.62972 * 126.29441 * 16 15 14 18 18 H 1.08005 * 120.00173 * 331.83979 * 17 16 15 19 19 C 1.38813 * 119.99936 * 151.83343 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.08512 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.08402 * 19 17 16 22 22 H 1.48500 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46793 * 120.00276 * 21 19 17 24 24 H 1.48498 * 109.46814 * 240.00176 * 21 19 17 25 25 C 1.46927 * 118.74004 * 306.32424 * 16 15 14 26 26 C 1.53047 * 109.46203 * 155.00199 * 13 12 10 27 27 H 1.09003 * 109.46560 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47079 * 299.99772 * 1 2 3 29 29 H 1.08997 * 109.47598 * 60.00443 * 1 2 3 30 30 H 1.08994 * 109.47185 * 240.00570 * 2 1 3 31 31 H 1.08997 * 109.47598 * 119.99556 * 2 1 3 32 32 H 1.09002 * 109.47256 * 60.00792 * 6 3 2 33 33 H 1.08993 * 109.47509 * 299.99834 * 6 3 2 34 34 H 1.09001 * 109.47279 * 60.00072 * 7 6 3 35 35 H 1.09005 * 109.47288 * 300.00580 * 7 6 3 36 36 H 1.09001 * 109.47100 * 269.99644 * 9 8 7 37 37 H 1.08995 * 109.47593 * 29.99730 * 9 8 7 38 38 H 1.09003 * 109.47019 * 149.99698 * 9 8 7 39 39 H 0.97002 * 120.00429 * 0.02562 * 12 10 8 40 40 H 1.08997 * 109.46024 * 35.03189 * 13 12 10 41 41 H 1.09001 * 109.68292 * 58.70764 * 14 13 12 42 42 H 1.08994 * 109.47524 * 298.51588 * 14 13 12 43 43 H 1.09000 * 109.58714 * 294.72587 * 15 14 13 44 44 H 1.09003 * 109.58688 * 174.43867 * 15 14 13 45 45 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.58255 * 173.39566 * 25 16 15 47 47 H 1.09000 * 109.58150 * 293.67300 * 25 16 15 48 48 H 1.09000 * 109.49464 * 61.43529 * 26 13 12 49 49 H 1.08999 * 109.52117 * 301.35281 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7104 0.0000 4 8 1.7591 2.3232 1.2258 5 8 1.7591 2.3233 -1.2258 6 6 3.9328 1.4721 0.0008 7 6 4.6279 2.8351 0.0002 8 7 6.0802 2.6427 0.0015 9 6 6.8054 2.5475 1.2708 10 6 6.7492 2.5533 -1.1652 11 8 6.1473 2.6328 -2.2187 12 7 8.0851 2.3759 -1.1640 13 6 8.8122 2.2792 -2.4321 14 6 8.7648 0.8324 -2.9382 15 6 9.4982 0.7451 -4.2803 16 7 10.8550 1.2847 -4.1170 17 6 11.9484 0.5458 -4.4825 18 1 11.9040 -0.5331 -4.4574 19 6 13.1138 1.1833 -4.8854 20 7 13.0825 2.4513 -5.2369 21 14 14.7265 0.2416 -4.9285 22 1 14.4943 -1.1581 -4.4900 23 1 15.2638 0.2435 -6.3129 24 1 15.7032 0.8907 -4.0175 25 6 11.0164 2.6320 -3.5534 26 6 10.2679 2.7011 -2.2187 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 4.2259 0.9149 -0.8891 33 1 4.2252 0.9151 0.8909 34 1 4.3349 3.3927 0.8898 35 1 4.3354 3.3917 -0.8902 36 1 7.1202 3.5426 1.5850 37 1 6.1534 2.1160 2.0303 38 1 7.6822 1.9129 1.1416 39 1 8.5653 2.3121 -0.3236 40 1 8.3481 2.9360 -3.1679 41 1 7.7278 0.5233 -3.0695 42 1 9.2510 0.1782 -2.2146 43 1 8.9610 1.3276 -5.0288 44 1 9.5547 -0.2958 -4.5987 45 1 13.8969 2.8968 -5.5181 46 1 12.0747 2.8352 -3.3899 47 1 10.6053 3.3684 -4.2439 48 1 10.7399 2.0293 -1.5017 49 1 10.2991 3.7214 -1.8365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323051577.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:19 Heat of formation + Delta-G solvation = -100.427738 kcal Electronic energy + Delta-G solvation = -29157.910485 eV Core-core repulsion = 25054.319689 eV Total energy + Delta-G solvation = -4103.590797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.42798 -39.22861 -38.03024 -37.15115 -36.94267 -36.04513 -34.09543 -34.00172 -32.62065 -31.66671 -30.84746 -27.75673 -27.00294 -25.62875 -24.35431 -23.88436 -23.24275 -21.21736 -20.77437 -19.85039 -19.30163 -18.53927 -18.17075 -17.38072 -17.22844 -17.13428 -16.80182 -16.29796 -15.93910 -15.56462 -15.44896 -15.34759 -15.14811 -14.82429 -14.66691 -14.52438 -14.09519 -14.05723 -13.99879 -13.61065 -13.33689 -13.30077 -13.19129 -13.15427 -13.06142 -13.02099 -12.62677 -12.50878 -12.40523 -12.32358 -12.20462 -11.99686 -11.98170 -11.87034 -11.55689 -11.42322 -11.33841 -11.13409 -10.56760 -10.17119 -9.60935 -8.71230 -7.87752 -5.33671 -1.02474 1.47732 1.49756 1.57690 1.60594 1.81152 2.07415 2.52030 2.64094 2.97138 3.07164 3.28687 3.59703 3.65785 3.72374 3.76473 3.89140 3.95542 4.05604 4.24081 4.27590 4.33719 4.41164 4.43615 4.46762 4.62095 4.65142 4.74676 4.80159 4.84072 4.85151 4.87693 4.90892 5.00612 5.06311 5.12662 5.15370 5.29050 5.41507 5.46440 5.58102 5.64729 5.69702 5.86977 6.39103 6.94652 7.14333 7.53261 7.83750 8.37014 9.19612 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.001994 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.503279 B =14036.300842 C =14475.310473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.592 4.592 3 S 2.420 3.580 4 O -0.969 6.969 5 O -0.986 6.986 6 C -0.624 4.624 7 C 0.133 3.867 8 N -0.623 5.623 9 C 0.065 3.935 10 C 0.696 3.304 11 O -0.632 6.632 12 N -0.724 5.724 13 C 0.178 3.822 14 C -0.121 4.121 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.069 0.931 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.287 1.287 25 C 0.178 3.822 26 C -0.126 4.126 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.167 0.833 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.409 0.591 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.005 0.995 44 H 0.058 0.942 45 H 0.251 0.749 46 H 0.064 0.936 47 H -0.007 1.007 48 H 0.072 0.928 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.323 -5.458 20.669 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.725 4.725 3 S 2.606 3.394 4 O -0.966 6.966 5 O -0.983 6.983 6 C -0.754 4.754 7 C 0.008 3.992 8 N -0.361 5.361 9 C -0.076 4.076 10 C 0.397 3.603 11 O -0.513 6.513 12 N -0.380 5.380 13 C 0.073 3.927 14 C -0.162 4.162 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.086 0.914 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.214 1.214 25 C 0.052 3.948 26 C -0.166 4.166 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.185 0.815 32 H 0.153 0.847 33 H 0.190 0.810 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.023 0.977 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.011 0.989 48 H 0.091 0.909 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.088 -4.490 19.880 29.327 hybrid contribution 1.649 -0.767 -0.454 1.874 sum -19.439 -5.257 19.425 27.980 Atomic orbital electron populations 1.21707 0.90732 1.06183 1.03548 1.30031 1.07089 1.20962 1.14371 1.07806 0.78060 0.79796 0.73720 1.93540 1.81666 1.75243 1.46128 1.93560 1.81879 1.75603 1.47263 1.30718 1.23402 1.07505 1.13823 1.21068 0.79515 0.93915 1.04727 1.46971 1.06902 1.76774 1.05408 1.22128 0.98039 1.03289 0.84184 1.16188 0.82315 0.77746 0.84084 1.90918 1.68559 1.59868 1.31918 1.45273 1.05259 1.77426 1.10011 1.20584 0.91318 0.96371 0.84434 1.22220 0.99347 0.96509 0.98099 1.20970 0.85404 0.97406 0.94455 1.44362 1.01073 1.15775 1.72035 1.19551 0.91174 0.90570 1.37779 0.91372 1.25848 1.02448 0.97378 0.99050 1.70195 1.27442 1.12207 1.48403 0.85173 0.79743 0.78583 0.76713 1.18956 1.22277 1.21403 1.20567 0.99016 0.85046 0.90186 1.22240 0.93443 1.01403 0.99519 0.87894 0.90703 0.91674 0.83032 0.81518 0.84745 0.81000 0.86344 0.91135 0.91149 0.87758 0.90171 0.75233 0.92881 0.92254 0.91337 0.97734 0.92321 0.94037 0.91764 0.98912 0.90888 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.92 71.98 0.71 -0.63 16 2 C -0.59 -3.59 6.53 71.98 0.47 -3.12 16 3 S 2.42 34.47 4.72 -56.49 -0.27 34.21 16 4 O -0.97 -18.54 18.10 -127.37 -2.30 -20.85 16 5 O -0.99 -24.71 18.10 -127.37 -2.31 -27.01 16 6 C -0.62 -7.39 6.13 71.98 0.44 -6.94 16 7 C 0.13 2.38 5.41 86.38 0.47 2.85 16 8 N -0.62 -11.94 2.87 -864.90 -2.49 -14.42 16 9 C 0.07 0.62 10.20 127.77 1.30 1.93 16 10 C 0.70 19.88 8.24 179.06 1.48 21.36 16 11 O -0.63 -24.32 15.59 -4.01 -0.06 -24.38 16 12 N -0.72 -18.88 4.94 -457.19 -2.26 -21.14 16 13 C 0.18 6.07 2.42 45.12 0.11 6.18 16 14 C -0.12 -4.28 5.68 30.77 0.17 -4.11 16 15 C 0.14 6.23 6.50 86.36 0.56 6.79 16 16 N -0.61 -30.62 2.99 -699.08 -2.09 -32.71 16 17 C -0.26 -14.19 9.58 84.03 0.81 -13.38 16 18 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 19 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 20 N -0.94 -55.16 11.20 21.65 0.24 -54.92 16 21 Si 0.97 44.16 29.59 68.60 2.03 46.19 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 25 C 0.18 8.49 5.30 86.36 0.46 8.95 16 26 C -0.13 -4.43 5.55 30.67 0.17 -4.26 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.17 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.17 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.12 1.43 8.07 -2.39 -0.02 1.41 16 35 H 0.07 1.72 7.42 -2.38 -0.02 1.70 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 38 H 0.08 0.64 6.36 -2.39 -0.02 0.63 16 39 H 0.41 7.78 6.33 -92.71 -0.59 7.19 16 40 H 0.05 2.15 7.58 -2.39 -0.02 2.14 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 45 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.06 3.41 6.06 -2.39 -0.01 3.40 16 47 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -86.07 403.81 -1.59 -87.67 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.34 Total: 14.22 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 7.57 Total: 13.15 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.60 Total: -123.19 kcal Atomic # 8 Polarization: -67.57 SS G_CDS: -4.67 Total: -72.24 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 34.47 SS G_CDS: -0.27 Total: 34.21 kcal Total: -86.07 -1.59 -87.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323051577.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.762 kcal (2) G-P(sol) polarization free energy of solvation -86.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds