Wall clock time and date at job start Wed Apr 1 2020 05:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34783 * 119.99726 * 2 1 4 4 O 1.21277 * 119.99589 * 180.27775 * 3 2 1 5 5 C 1.50697 * 119.99969 * 0.02562 * 3 2 1 6 6 C 1.53009 * 109.46790 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46562 * 179.97438 * 6 5 3 8 8 S 1.81399 * 109.46560 * 179.97438 * 7 6 5 9 9 N 1.65602 * 104.44771 * 180.02562 * 8 7 6 10 10 O 1.42101 * 110.54683 * 291.62913 * 8 7 6 11 11 O 1.42105 * 110.54514 * 68.38160 * 8 7 6 12 12 C 1.46498 * 120.00067 * 180.02562 * 2 1 3 13 13 C 1.53001 * 109.47350 * 125.78054 * 12 2 1 14 14 C 1.52997 * 109.46966 * 299.99580 * 13 12 2 15 15 C 1.53004 * 109.47273 * 300.00365 * 14 13 12 16 16 N 1.46496 * 109.47373 * 179.97438 * 15 14 13 17 17 C 1.36936 * 120.00068 * 84.99944 * 16 15 14 18 18 H 1.08004 * 119.99602 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00248 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00175 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00101 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47243 * 59.99233 * 21 19 17 23 23 H 1.48502 * 109.46912 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46898 * 299.99572 * 21 19 17 25 25 C 1.52999 * 109.46977 * 59.99617 * 15 14 13 26 26 C 1.52992 * 109.47173 * 5.77401 * 12 2 1 27 27 H 1.09006 * 109.47213 * 84.07919 * 1 2 3 28 28 H 1.08999 * 109.47398 * 204.07899 * 1 2 3 29 29 H 1.09006 * 109.47272 * 324.08233 * 1 2 3 30 30 H 1.09004 * 109.47139 * 299.99768 * 5 3 2 31 31 H 1.09002 * 109.47358 * 60.00228 * 5 3 2 32 32 H 1.08994 * 109.47286 * 300.00021 * 6 5 3 33 33 H 1.08997 * 109.47127 * 60.00473 * 6 5 3 34 34 H 1.08994 * 109.47478 * 300.00075 * 7 6 5 35 35 H 1.08997 * 109.46872 * 60.00489 * 7 6 5 36 36 H 0.96997 * 119.99942 * 359.97438 * 9 8 7 37 37 H 0.97002 * 119.99886 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.46537 * 245.77340 * 12 2 1 39 39 H 1.08996 * 109.47388 * 59.99685 * 13 12 2 40 40 H 1.09000 * 109.47056 * 180.02562 * 13 12 2 41 41 H 1.08999 * 109.47764 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.47455 * 59.99887 * 14 13 12 43 43 H 1.09000 * 109.47164 * 299.99786 * 15 14 13 44 44 H 0.97001 * 120.00292 * 265.00097 * 16 15 14 45 45 H 0.96998 * 120.00232 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.47163 * 180.02562 * 25 15 14 47 47 H 1.09001 * 109.47105 * 60.00873 * 25 15 14 48 48 H 1.09000 * 109.47360 * 180.02562 * 26 12 2 49 49 H 1.09001 * 109.47564 * 300.00344 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0051 5 6 1.3853 2.4723 0.0006 6 6 2.3796 3.6353 0.0011 7 6 1.6144 4.9603 0.0011 8 16 2.7932 6.3391 0.0024 9 7 1.8428 7.6952 0.0030 10 8 3.4892 6.3990 1.2399 11 8 3.4908 6.4000 -1.2341 12 6 2.1974 -1.2687 -0.0006 13 6 3.1829 -1.2882 -1.1708 14 6 2.4154 -1.1419 -2.4863 15 6 1.4275 -2.3012 -2.6320 16 7 0.6921 -2.1608 -3.8912 17 6 1.2284 -2.6442 -5.0548 18 1 2.1937 -3.1286 -5.0441 19 6 0.5319 -2.5108 -6.2481 20 7 -0.6442 -1.9201 -6.2611 21 14 1.2632 -3.1709 -7.8352 22 1 1.4813 -4.6344 -7.7087 23 1 0.3290 -2.9053 -8.9587 24 1 2.5604 -2.4983 -8.0999 25 6 0.4421 -2.2816 -1.4616 26 6 1.2096 -2.4279 -0.1462 27 1 -0.3634 0.1060 -1.0222 28 1 -0.3634 -0.9382 0.4193 29 1 -0.3634 0.8323 0.6029 30 1 0.7583 2.5303 -0.8892 31 1 0.7589 2.5299 0.8908 32 1 3.0062 3.5772 0.8910 33 1 3.0061 3.5780 -0.8889 34 1 0.9881 5.0182 -0.8891 35 1 0.9876 5.0178 0.8909 36 1 0.8766 7.6103 0.0022 37 1 2.2524 8.5745 0.0033 38 1 2.7443 -1.3728 0.9366 39 1 3.8866 -0.4624 -1.0670 40 1 3.7275 -2.2324 -1.1715 41 1 3.1173 -1.1563 -3.3201 42 1 1.8703 -0.1980 -2.4859 43 1 1.9724 -3.2451 -2.6323 44 1 -0.1746 -1.7254 -3.9008 45 1 -1.1311 -1.8271 -7.0949 46 1 -0.2614 -3.1077 -1.5652 47 1 -0.1030 -1.3377 -1.4613 48 1 1.7546 -3.3719 -0.1462 49 1 0.5076 -2.4140 0.6875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329244439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:29 Heat of formation + Delta-G solvation = -127.511486 kcal Electronic energy + Delta-G solvation = -29582.298577 eV Core-core repulsion = 25477.533341 eV Total energy + Delta-G solvation = -4104.765236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64350 -39.26146 -38.04562 -36.96889 -36.60273 -35.71986 -34.77136 -33.99237 -32.79094 -31.94763 -30.04158 -28.94547 -27.28425 -25.51958 -23.94446 -23.49563 -22.24208 -21.05226 -20.36743 -19.76920 -19.09335 -18.56132 -18.19026 -17.66311 -17.39823 -17.09578 -16.85372 -16.71151 -16.22805 -16.03387 -15.60177 -15.29248 -15.17871 -14.72705 -14.56301 -14.05684 -13.96027 -13.73276 -13.39913 -13.28614 -13.18810 -13.13758 -13.10988 -13.05780 -13.02312 -12.88059 -12.79901 -12.74506 -12.56190 -12.20332 -12.06305 -11.96952 -11.86219 -11.63025 -11.42668 -11.31050 -11.23688 -11.07544 -10.89903 -10.37871 -9.47455 -8.97386 -7.94869 -5.21362 -0.70888 1.44727 1.46938 1.52821 1.71564 1.98885 2.14679 2.55120 2.74096 3.37044 3.39745 3.45209 3.74685 3.79976 3.87747 3.89984 3.91603 4.13076 4.30453 4.35485 4.37114 4.39825 4.45155 4.55945 4.62500 4.63680 4.67201 4.69858 4.77431 4.87151 4.94717 4.97659 5.07872 5.08895 5.16916 5.25484 5.29218 5.31750 5.32274 5.47909 5.56358 5.65605 5.77957 6.29044 6.41446 6.52943 7.28509 7.34843 8.12756 8.36244 9.28197 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.002521 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.905447 B =11104.117898 C =12592.837023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.603 5.603 3 C 0.498 3.502 4 O -0.583 6.583 5 C -0.127 4.127 6 C -0.110 4.110 7 C -0.594 4.594 8 S 2.617 3.383 9 N -1.237 6.237 10 O -1.010 7.010 11 O -1.017 7.017 12 C 0.155 3.845 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.174 3.826 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.065 0.935 19 C -0.073 4.073 20 N -0.966 5.966 21 Si 0.965 3.035 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.285 1.285 25 C -0.135 4.135 26 C -0.110 4.110 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.169 0.831 35 H 0.181 0.819 36 H 0.429 0.571 37 H 0.423 0.577 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.019 0.981 42 H 0.040 0.960 43 H 0.030 0.970 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 13.954 21.381 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.335 5.335 3 C 0.288 3.712 4 O -0.464 6.464 5 C -0.167 4.167 6 C -0.149 4.149 7 C -0.727 4.727 8 S 2.713 3.287 9 N -0.915 5.915 10 O -0.999 6.999 11 O -1.006 7.006 12 C 0.052 3.948 13 C -0.172 4.172 14 C -0.151 4.151 15 C 0.066 3.934 16 N -0.374 5.374 17 C -0.370 4.370 18 H 0.083 0.917 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.795 3.205 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.211 1.211 25 C -0.173 4.173 26 C -0.148 4.148 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.187 0.813 35 H 0.199 0.801 36 H 0.259 0.741 37 H 0.254 0.746 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.488 13.689 21.257 25.405 hybrid contribution -0.345 -0.127 -1.647 1.687 sum -2.833 13.562 19.610 24.010 Atomic orbital electron populations 1.22398 0.77893 1.05737 1.02326 1.47974 1.08097 1.05214 1.72263 1.21307 0.87845 0.86744 0.75335 1.90641 1.16095 1.88015 1.51694 1.21733 0.98690 0.88815 1.07478 1.21081 0.98026 0.91889 1.03941 1.30185 1.15740 1.10907 1.15833 1.04220 0.75277 0.76224 0.72966 1.52735 1.21001 1.22973 1.94801 1.93564 1.72710 1.86522 1.47090 1.93577 1.72874 1.86523 1.47606 1.20980 0.92831 0.83545 0.97435 1.21927 0.98601 1.02304 0.94347 1.21895 0.97993 0.99585 0.95637 1.20432 0.92400 0.94806 0.85729 1.42573 1.21529 1.70085 1.03222 1.19504 1.01190 1.29129 0.87205 0.91667 1.25434 0.97633 1.02788 1.00643 1.69772 1.14965 1.50437 1.26512 0.85337 0.77113 0.78293 0.79793 1.20451 1.21844 1.21115 1.22212 0.97992 1.03656 0.93403 1.21782 0.98179 0.97349 0.97505 0.92562 0.88392 0.88138 0.86700 0.84406 0.90335 0.91960 0.81322 0.80144 0.74122 0.74608 0.90476 0.91617 0.91365 0.96243 0.94106 0.95191 0.79457 0.94033 0.92201 0.89303 0.89977 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 8.06 127.77 1.03 1.83 16 2 N -0.60 -12.81 2.28 -822.60 -1.87 -14.68 16 3 C 0.50 12.04 7.21 87.65 0.63 12.67 16 4 O -0.58 -19.36 13.68 -3.02 -0.04 -19.40 16 5 C -0.13 -1.78 4.33 29.85 0.13 -1.65 16 6 C -0.11 -1.82 4.51 30.60 0.14 -1.68 16 7 C -0.59 -4.16 6.09 71.98 0.44 -3.72 16 8 S 2.62 39.30 5.97 -56.49 -0.34 38.97 16 9 N -1.24 -7.90 9.43 37.02 0.35 -7.55 16 10 O -1.01 -23.81 18.10 -127.65 -2.31 -26.12 16 11 O -1.02 -26.41 18.10 -127.65 -2.31 -28.72 16 12 C 0.16 3.70 3.05 44.99 0.14 3.84 16 13 C -0.13 -4.18 5.14 30.59 0.16 -4.02 16 14 C -0.11 -4.23 5.34 30.59 0.16 -4.07 16 15 C 0.17 6.79 2.77 44.99 0.12 6.91 16 16 N -0.73 -36.70 5.12 -322.94 -1.65 -38.35 16 17 C -0.24 -13.43 9.93 84.03 0.83 -12.59 16 18 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 20 N -0.97 -58.50 13.06 21.65 0.28 -58.21 16 21 Si 0.97 46.86 29.55 68.60 2.03 48.88 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 24 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 25 C -0.14 -3.77 4.84 30.59 0.15 -3.63 16 26 C -0.11 -2.25 4.90 30.59 0.15 -2.10 16 27 H 0.06 0.97 6.49 -2.38 -0.02 0.96 16 28 H 0.10 1.12 5.26 -2.39 -0.01 1.10 16 29 H 0.10 0.66 6.69 -2.38 -0.02 0.64 16 30 H 0.11 1.33 8.11 -2.39 -0.02 1.31 16 31 H 0.14 0.79 7.42 -2.39 -0.02 0.77 16 32 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 33 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.17 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.18 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.43 -0.54 8.83 -96.75 -0.85 -1.40 16 37 H 0.42 2.49 8.96 -96.74 -0.87 1.63 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 2.36 5.76 -2.39 -0.01 2.34 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 1.60 7.46 -2.39 -0.02 1.59 16 43 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 44 H 0.37 19.59 7.80 -92.71 -0.72 18.87 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 46 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.09 2.31 3.94 -2.39 -0.01 2.30 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.10 1.42 6.68 -2.39 -0.02 1.41 16 Total: -1.00 -91.94 389.11 -2.77 -94.71 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -1.45 Total: 22.43 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 4.55 Total: -11.94 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -2.90 Total: -118.80 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -4.66 Total: -74.25 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 16 Polarization: 39.30 SS G_CDS: -0.34 Total: 38.97 kcal Total: -91.94 -2.77 -94.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329244439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.801 kcal (2) G-P(sol) polarization free energy of solvation -91.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds