Wall clock time and date at job start Wed Apr 1 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47107 * 2 1 4 4 O 1.42097 * 110.54329 * 68.37411 * 3 2 1 5 5 O 1.42105 * 110.54032 * 291.62758 * 3 2 1 6 6 N 1.65591 * 104.45142 * 180.02562 * 3 2 1 7 7 C 1.46506 * 120.00093 * 269.99645 * 6 3 2 8 8 C 1.46503 * 120.00504 * 89.99931 * 6 3 2 9 9 C 1.50701 * 109.46814 * 265.00099 * 8 6 3 10 10 O 1.21282 * 120.00330 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99723 * 179.97438 * 9 8 6 12 12 C 1.46504 * 119.99763 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.01607 * 33.61349 * 12 11 9 14 14 C 1.54269 * 110.07012 * 272.18910 * 12 11 9 15 15 C 1.55032 * 104.27833 * 264.21154 * 14 12 11 16 16 C 1.54881 * 102.68502 * 322.23515 * 15 14 12 17 17 H 1.09006 * 110.48920 * 279.02910 * 16 15 14 18 18 C 1.53005 * 110.48896 * 156.51815 * 16 15 14 19 19 N 1.46505 * 109.46904 * 68.24079 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.53876 * 110.02897 * 154.99903 * 12 11 9 29 29 H 1.09000 * 109.47290 * 60.00336 * 1 2 3 30 30 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47273 * 299.99661 * 1 2 3 32 32 H 1.08998 * 109.47473 * 239.99823 * 2 1 3 33 33 H 1.09000 * 109.47290 * 119.99664 * 2 1 3 34 34 H 1.08990 * 109.47432 * 270.00547 * 7 6 3 35 35 H 1.09006 * 109.46716 * 30.00091 * 7 6 3 36 36 H 1.08999 * 109.47128 * 149.99937 * 7 6 3 37 37 H 1.08996 * 109.47505 * 145.00246 * 8 6 3 38 38 H 1.08999 * 109.46944 * 24.99952 * 8 6 3 39 39 H 0.96999 * 120.00228 * 359.97438 * 11 9 8 40 40 H 1.08995 * 110.48656 * 22.98283 * 14 12 11 41 41 H 1.08999 * 110.48093 * 145.49644 * 14 12 11 42 42 H 1.09004 * 110.87147 * 203.90327 * 15 14 12 43 43 H 1.08994 * 110.69513 * 80.49103 * 15 14 12 44 44 H 1.09003 * 109.46946 * 308.24838 * 18 16 15 45 45 H 1.08993 * 109.47679 * 188.24380 * 18 16 15 46 46 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 47 47 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 48 48 H 1.09001 * 110.03595 * 0.05210 * 28 12 11 49 49 H 1.09001 * 110.03522 * 238.61463 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8384 2.3438 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5012 1.2677 8 6 4.5135 1.5014 -1.2697 9 6 4.7465 0.0601 -1.6430 10 8 4.3427 -0.8264 -0.9206 11 7 5.4027 -0.2437 -2.7804 12 6 5.6287 -1.6449 -3.1436 13 1 4.7910 -2.2569 -2.8092 14 6 6.9401 -2.1516 -2.5085 15 6 7.9992 -1.9768 -3.6271 16 6 7.2095 -2.3536 -4.9050 17 1 7.1620 -3.4367 -5.0187 18 6 7.8506 -1.7146 -6.1387 19 7 9.1546 -2.3343 -6.3876 20 6 9.9181 -1.9209 -7.4465 21 1 9.5592 -1.1378 -8.0979 22 6 11.1562 -2.5041 -7.6789 23 7 11.8924 -2.1030 -8.6936 24 14 11.7773 -3.8581 -6.5518 25 1 11.3358 -5.1769 -7.0724 26 1 13.2609 -3.8175 -6.5004 27 1 11.2290 -3.6560 -5.1866 28 6 5.8000 -1.7733 -4.6674 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.7854 2.5089 1.5824 35 1 3.8830 1.0407 2.0276 36 1 5.4182 0.9060 1.1370 37 1 5.4723 2.0089 -1.1638 38 1 3.9287 1.9889 -2.0498 39 1 5.7247 0.4652 -3.3588 40 1 7.2003 -1.5489 -1.6383 41 1 6.8486 -3.2016 -2.2307 42 1 8.8383 -2.6562 -3.4771 43 1 8.3416 -0.9431 -3.6752 44 1 7.9828 -0.6463 -5.9672 45 1 7.2051 -1.8667 -7.0036 46 1 9.4771 -3.0374 -5.8023 47 1 12.7574 -2.5107 -8.8563 48 1 5.7158 -0.7931 -5.1366 49 1 5.0455 -2.4477 -5.0725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332322163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:17 Heat of formation + Delta-G solvation = -98.178825 kcal Electronic energy + Delta-G solvation = -29117.596992 eV Core-core repulsion = 25014.103716 eV Total energy + Delta-G solvation = -4103.493277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.37409 -38.40229 -37.55038 -36.47005 -36.09790 -35.00255 -33.55767 -33.45405 -31.40241 -29.58458 -29.10347 -27.77117 -25.71706 -24.53025 -24.18912 -21.96574 -21.41573 -20.34325 -19.76125 -19.24859 -18.28676 -17.71568 -17.54107 -16.97014 -16.69666 -16.31984 -15.76667 -15.18134 -15.07162 -14.74602 -14.46185 -14.42990 -14.12409 -13.78939 -13.60602 -13.40374 -13.30092 -13.22162 -12.89951 -12.77681 -12.71642 -12.49971 -12.27390 -12.09157 -12.02385 -11.97137 -11.88515 -11.69407 -11.41285 -11.10568 -10.99133 -10.95080 -10.60580 -10.50671 -10.42164 -10.38795 -10.10090 -9.61435 -9.40558 -9.28467 -8.91932 -7.25264 -5.79375 -3.14656 -0.16261 2.06297 2.24348 2.90516 3.34283 3.37138 3.41388 3.42756 3.72039 4.06541 4.30979 4.35935 4.38458 4.53687 4.56359 4.58905 4.77975 4.78609 4.86635 4.88172 5.12751 5.16280 5.24889 5.33517 5.39061 5.41553 5.42551 5.44433 5.49320 5.51772 5.56430 5.65978 5.73393 5.85815 5.88091 5.92856 5.93736 6.11144 6.30753 6.36996 6.40272 6.64790 6.75560 7.19924 7.87074 7.96944 8.39823 9.19185 9.91639 10.11645 11.39088 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.001944 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.981162 B =14396.906942 C =14439.785943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.620 4.620 3 S 2.608 3.392 4 O -0.953 6.953 5 O -0.956 6.956 6 N -0.984 5.984 7 C 0.098 3.902 8 C 0.092 3.908 9 C 0.487 3.513 10 O -0.538 6.538 11 N -0.716 5.716 12 C 0.141 3.859 13 H 0.089 0.911 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.103 4.103 17 H 0.076 0.924 18 C 0.165 3.835 19 N -0.755 5.755 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.122 4.122 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.404 0.596 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.076 0.924 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.091 5.777 20.854 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.750 4.750 3 S 2.701 3.299 4 O -0.943 6.943 5 O -0.947 6.947 6 N -0.819 5.819 7 C -0.047 4.047 8 C -0.037 4.037 9 C 0.271 3.729 10 O -0.415 6.415 11 N -0.368 5.368 12 C 0.036 3.964 13 H 0.107 0.893 14 C -0.170 4.170 15 C -0.152 4.152 16 C -0.122 4.122 17 H 0.094 0.906 18 C 0.038 3.962 19 N -0.401 5.401 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.161 4.161 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.239 0.761 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.763 6.089 21.193 30.981 hybrid contribution 1.120 -1.552 0.373 1.950 sum -20.643 4.537 21.566 30.196 Atomic orbital electron populations 1.21533 0.90805 1.05129 1.03187 1.30437 1.06373 1.25630 1.12574 1.05233 0.72710 0.77667 0.74264 1.93599 1.82845 1.72831 1.45057 1.93582 1.82882 1.73020 1.45167 1.57106 1.24792 1.89100 1.10913 1.21480 0.97876 1.02215 0.83121 1.21332 1.01198 0.94054 0.87136 1.21384 0.78038 0.92143 0.81287 1.90684 1.50834 1.49286 1.50699 1.46259 1.57627 1.09177 1.23755 1.21674 0.98307 0.81431 0.94972 0.89337 1.22795 0.94692 1.01255 0.98305 1.22556 0.97219 1.02088 0.93353 1.22235 0.93444 1.00576 0.95928 0.90591 1.20663 0.86922 0.95259 0.93338 1.42701 1.18221 1.45098 1.34070 1.19060 0.97979 1.17014 1.03309 0.89280 1.24686 0.96975 0.99631 0.97996 1.69700 1.12880 1.45127 1.30540 0.86539 0.78138 0.82937 0.80842 1.21114 1.21763 1.20342 1.22448 0.97882 1.02279 0.93484 0.91069 0.89917 0.91126 0.84572 0.84902 0.91950 0.90954 0.90766 0.86503 0.85624 0.76092 0.91625 0.91056 0.91465 0.91139 0.95610 0.95641 0.80670 0.93066 0.90547 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.92 37.16 0.37 -0.54 16 2 C -0.62 -4.45 6.43 37.16 0.24 -4.21 16 3 S 2.61 23.21 5.38 -107.50 -0.58 22.63 16 4 O -0.95 -10.78 17.09 -57.54 -0.98 -11.76 16 5 O -0.96 -10.73 16.53 -57.54 -0.95 -11.68 16 6 N -0.98 -7.50 2.61 -123.05 -0.32 -7.82 16 7 C 0.10 0.62 10.20 59.85 0.61 1.23 16 8 C 0.09 0.60 6.12 -5.19 -0.03 0.57 16 9 C 0.49 4.18 7.89 -10.98 -0.09 4.10 16 10 O -0.54 -5.99 14.66 5.56 0.08 -5.91 16 11 N -0.72 -5.70 5.03 -52.71 -0.27 -5.97 16 12 C 0.14 1.36 3.25 -66.81 -0.22 1.14 16 13 H 0.09 0.92 7.56 -51.93 -0.39 0.53 16 14 C -0.13 -1.41 6.54 -24.99 -0.16 -1.57 16 15 C -0.11 -1.47 6.11 -24.67 -0.15 -1.62 16 16 C -0.10 -1.38 2.90 -88.96 -0.26 -1.64 16 17 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 18 C 0.17 2.94 5.54 -4.04 -0.02 2.92 16 19 N -0.76 -17.31 5.27 -59.90 -0.32 -17.63 16 20 C -0.24 -6.79 10.47 -15.06 -0.16 -6.94 16 21 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 23 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 24 Si 0.89 21.82 27.74 -169.99 -4.72 17.11 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.37 6.51 56.52 0.37 -6.00 16 28 C -0.12 -1.24 6.14 -25.61 -0.16 -1.40 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 1.04 7.21 -51.92 -0.37 0.67 16 33 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 36 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.12 0.48 8.11 -51.93 -0.42 0.06 16 38 H 0.13 0.74 6.81 -51.93 -0.35 0.39 16 39 H 0.40 2.42 8.32 -40.82 -0.34 2.08 16 40 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 44 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.36 8.09 5.44 -40.82 -0.22 7.87 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.08 0.72 7.31 -51.93 -0.38 0.34 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 404.54 15.07 6.10 6.10 Total: -1.00 -36.56 404.54 -9.68 -46.24 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.38 Total: 5.02 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.12 Total: -7.98 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.13 Total: -59.76 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -1.85 Total: -29.34 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: 23.21 SS G_CDS: -0.58 Total: 22.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.56 -9.68 -46.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332322163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.940 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds