Wall clock time and date at job start Wed Apr 1 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47107 * 2 1 4 4 O 1.42097 * 110.54329 * 68.37411 * 3 2 1 5 5 O 1.42105 * 110.54032 * 291.62758 * 3 2 1 6 6 N 1.65591 * 104.45142 * 180.02562 * 3 2 1 7 7 C 1.46506 * 120.00093 * 269.99645 * 6 3 2 8 8 C 1.46503 * 120.00504 * 89.99931 * 6 3 2 9 9 C 1.50701 * 109.46814 * 265.00099 * 8 6 3 10 10 O 1.21282 * 120.00330 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99723 * 179.97438 * 9 8 6 12 12 C 1.46504 * 119.99763 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.01607 * 33.61349 * 12 11 9 14 14 C 1.54269 * 110.07012 * 272.18910 * 12 11 9 15 15 C 1.55032 * 104.27833 * 264.21154 * 14 12 11 16 16 C 1.54881 * 102.68502 * 322.23515 * 15 14 12 17 17 H 1.09006 * 110.48920 * 279.02910 * 16 15 14 18 18 C 1.53005 * 110.48896 * 156.51815 * 16 15 14 19 19 N 1.46505 * 109.46904 * 68.24079 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.53876 * 110.02897 * 154.99903 * 12 11 9 29 29 H 1.09000 * 109.47290 * 60.00336 * 1 2 3 30 30 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47273 * 299.99661 * 1 2 3 32 32 H 1.08998 * 109.47473 * 239.99823 * 2 1 3 33 33 H 1.09000 * 109.47290 * 119.99664 * 2 1 3 34 34 H 1.08990 * 109.47432 * 270.00547 * 7 6 3 35 35 H 1.09006 * 109.46716 * 30.00091 * 7 6 3 36 36 H 1.08999 * 109.47128 * 149.99937 * 7 6 3 37 37 H 1.08996 * 109.47505 * 145.00246 * 8 6 3 38 38 H 1.08999 * 109.46944 * 24.99952 * 8 6 3 39 39 H 0.96999 * 120.00228 * 359.97438 * 11 9 8 40 40 H 1.08995 * 110.48656 * 22.98283 * 14 12 11 41 41 H 1.08999 * 110.48093 * 145.49644 * 14 12 11 42 42 H 1.09004 * 110.87147 * 203.90327 * 15 14 12 43 43 H 1.08994 * 110.69513 * 80.49103 * 15 14 12 44 44 H 1.09003 * 109.46946 * 308.24838 * 18 16 15 45 45 H 1.08993 * 109.47679 * 188.24380 * 18 16 15 46 46 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 47 47 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 48 48 H 1.09001 * 110.03595 * 0.05210 * 28 12 11 49 49 H 1.09001 * 110.03522 * 238.61463 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8384 2.3438 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5012 1.2677 8 6 4.5135 1.5014 -1.2697 9 6 4.7465 0.0601 -1.6430 10 8 4.3427 -0.8264 -0.9206 11 7 5.4027 -0.2437 -2.7804 12 6 5.6287 -1.6449 -3.1436 13 1 4.7910 -2.2569 -2.8092 14 6 6.9401 -2.1516 -2.5085 15 6 7.9992 -1.9768 -3.6271 16 6 7.2095 -2.3536 -4.9050 17 1 7.1620 -3.4367 -5.0187 18 6 7.8506 -1.7146 -6.1387 19 7 9.1546 -2.3343 -6.3876 20 6 9.9181 -1.9209 -7.4465 21 1 9.5592 -1.1378 -8.0979 22 6 11.1562 -2.5041 -7.6789 23 7 11.8924 -2.1030 -8.6936 24 14 11.7773 -3.8581 -6.5518 25 1 11.3358 -5.1769 -7.0724 26 1 13.2609 -3.8175 -6.5004 27 1 11.2290 -3.6560 -5.1866 28 6 5.8000 -1.7733 -4.6674 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.7854 2.5089 1.5824 35 1 3.8830 1.0407 2.0276 36 1 5.4182 0.9060 1.1370 37 1 5.4723 2.0089 -1.1638 38 1 3.9287 1.9889 -2.0498 39 1 5.7247 0.4652 -3.3588 40 1 7.2003 -1.5489 -1.6383 41 1 6.8486 -3.2016 -2.2307 42 1 8.8383 -2.6562 -3.4771 43 1 8.3416 -0.9431 -3.6752 44 1 7.9828 -0.6463 -5.9672 45 1 7.2051 -1.8667 -7.0036 46 1 9.4771 -3.0374 -5.8023 47 1 12.7574 -2.5107 -8.8563 48 1 5.7158 -0.7931 -5.1366 49 1 5.0455 -2.4477 -5.0725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332322163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:16 Heat of formation + Delta-G solvation = -126.084274 kcal Electronic energy + Delta-G solvation = -29118.807064 eV Core-core repulsion = 25014.103716 eV Total energy + Delta-G solvation = -4104.703348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.09500 -39.32972 -38.31457 -37.21064 -36.86454 -36.38292 -34.66759 -34.03984 -33.24304 -30.57192 -30.02997 -28.67122 -26.48068 -25.83437 -24.77392 -23.66832 -22.20198 -21.25154 -20.80353 -19.93009 -19.51801 -18.91823 -18.33267 -17.62830 -17.40278 -17.15736 -16.66101 -16.40268 -15.94870 -15.89412 -15.58854 -15.17301 -15.05600 -14.95005 -14.63133 -14.36940 -14.20176 -14.01536 -13.87200 -13.67830 -13.52204 -13.48233 -13.40342 -13.28809 -12.87785 -12.75809 -12.65861 -12.50414 -12.45067 -12.37821 -12.13185 -11.96394 -11.83675 -11.72391 -11.65288 -11.57350 -11.45879 -11.13759 -10.93480 -10.00021 -9.98561 -9.26484 -8.01844 -5.34374 -0.81378 1.37683 1.41264 1.45682 1.48690 1.60452 2.26234 2.48980 2.76540 3.05915 3.29622 3.51697 3.55524 3.60222 3.77924 3.83800 3.84792 3.90927 4.00103 4.30507 4.32813 4.44317 4.44850 4.53534 4.55584 4.64303 4.65666 4.69774 4.71238 4.75483 4.84525 4.90374 4.95789 4.97709 5.04052 5.06588 5.12522 5.18290 5.24431 5.36672 5.38364 5.53676 5.66632 5.77571 6.22678 6.59217 7.09964 7.24808 7.87656 8.05843 9.19779 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.001944 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.981162 B =14396.906942 C =14439.785943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.608 4.608 3 S 2.613 3.387 4 O -0.982 6.982 5 O -0.984 6.984 6 N -0.986 5.986 7 C 0.091 3.909 8 C 0.091 3.909 9 C 0.488 3.512 10 O -0.563 6.563 11 N -0.710 5.710 12 C 0.148 3.852 13 H 0.087 0.913 14 C -0.122 4.122 15 C -0.113 4.113 16 C -0.096 4.096 17 H 0.074 0.926 18 C 0.161 3.839 19 N -0.758 5.758 20 C -0.232 4.232 21 H 0.056 0.944 22 C -0.068 4.068 23 N -0.985 5.985 24 Si 0.955 3.045 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.249 1.249 28 C -0.113 4.113 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.415 0.585 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.022 0.978 46 H 0.365 0.635 47 H 0.257 0.743 48 H 0.086 0.914 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.130 4.999 22.787 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.740 4.740 3 S 2.709 3.291 4 O -0.972 6.972 5 O -0.974 6.974 6 N -0.822 5.822 7 C -0.053 4.053 8 C -0.039 4.039 9 C 0.273 3.727 10 O -0.442 6.442 11 N -0.363 5.363 12 C 0.043 3.957 13 H 0.105 0.895 14 C -0.161 4.161 15 C -0.151 4.151 16 C -0.115 4.115 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.404 5.404 20 C -0.363 4.363 21 H 0.074 0.926 22 C -0.259 4.259 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.174 1.174 28 C -0.151 4.151 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.252 0.748 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.046 0.954 45 H 0.040 0.960 46 H 0.198 0.802 47 H 0.066 0.934 48 H 0.104 0.896 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.843 5.353 23.151 32.961 hybrid contribution 1.383 -1.263 -0.280 1.894 sum -21.460 4.090 22.871 31.628 Atomic orbital electron populations 1.21692 0.90073 1.06232 1.03748 1.30322 1.07094 1.23571 1.13003 1.04896 0.72942 0.78185 0.73062 1.93557 1.83513 1.74197 1.45975 1.93540 1.83517 1.74357 1.46014 1.56995 1.24365 1.89081 1.11731 1.21634 0.98077 1.02915 0.82713 1.21509 1.02562 0.92945 0.86842 1.21705 0.77388 0.92682 0.80912 1.90674 1.51891 1.50165 1.51509 1.46184 1.57425 1.08870 1.23863 1.21491 0.97625 0.82317 0.94286 0.89521 1.22706 0.94309 1.01578 0.97487 1.22505 0.97305 1.01387 0.93902 1.22126 0.95159 1.00260 0.93926 0.90724 1.20874 0.84813 0.95441 0.95359 1.42737 1.19507 1.45376 1.32754 1.19056 0.98229 1.15391 1.03618 0.92582 1.25538 0.97506 1.02863 1.00011 1.69886 1.13425 1.47238 1.33043 0.85401 0.76944 0.79427 0.79965 1.20567 1.22416 1.17388 1.22368 0.95819 1.02903 0.94055 0.90821 0.88517 0.90469 0.84718 0.83865 0.91229 0.90668 0.90036 0.83767 0.84951 0.74826 0.91534 0.90805 0.92927 0.91552 0.95384 0.96014 0.80159 0.93418 0.89563 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.92 71.98 0.71 -1.01 16 2 C -0.61 -7.83 6.43 71.98 0.46 -7.37 16 3 S 2.61 44.12 5.38 -56.49 -0.30 43.82 16 4 O -0.98 -21.72 17.09 -127.65 -2.18 -23.90 16 5 O -0.98 -21.40 16.53 -127.65 -2.11 -23.51 16 6 N -0.99 -13.42 2.61 -543.21 -1.42 -14.83 16 7 C 0.09 1.01 10.20 127.77 1.30 2.31 16 8 C 0.09 0.98 6.12 85.63 0.52 1.50 16 9 C 0.49 7.20 7.89 87.66 0.69 7.89 16 10 O -0.56 -11.30 14.66 -3.04 -0.04 -11.34 16 11 N -0.71 -9.36 5.03 -439.08 -2.21 -11.57 16 12 C 0.15 2.44 3.25 45.72 0.15 2.58 16 13 H 0.09 1.55 7.56 -2.39 -0.02 1.53 16 14 C -0.12 -2.30 6.54 31.72 0.21 -2.09 16 15 C -0.11 -2.67 6.11 31.93 0.20 -2.47 16 16 C -0.10 -2.35 2.90 -9.72 -0.03 -2.38 16 17 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 18 C 0.16 5.52 5.54 86.38 0.48 6.00 16 19 N -0.76 -33.99 5.27 -343.44 -1.81 -35.80 16 20 C -0.23 -13.02 10.47 84.04 0.88 -12.14 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 23 N -0.99 -62.87 13.97 21.65 0.30 -62.56 16 24 Si 0.96 44.86 27.74 68.60 1.90 46.76 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.25 -10.42 6.51 99.48 0.65 -9.78 16 28 C -0.11 -1.97 6.14 31.32 0.19 -1.78 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.13 1.84 7.21 -2.39 -0.02 1.83 16 33 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.77 7.79 -2.38 -0.02 0.75 16 36 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 37 H 0.14 0.76 8.11 -2.39 -0.02 0.74 16 38 H 0.13 1.29 6.81 -2.39 -0.02 1.28 16 39 H 0.41 3.75 8.32 -92.71 -0.77 2.98 16 40 H 0.07 1.26 8.04 -2.39 -0.02 1.24 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.07 1.62 8.00 -2.39 -0.02 1.60 16 44 H 0.03 0.96 8.06 -2.39 -0.02 0.94 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.37 15.66 5.44 -92.71 -0.50 15.15 16 47 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.09 1.36 7.31 -2.39 -0.02 1.34 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -79.28 404.54 -2.02 -81.30 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -0.39 Total: 24.11 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 6.24 Total: -12.46 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -5.13 Total: -124.77 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -4.34 Total: -58.76 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.30 Total: 43.82 kcal Total: -79.28 -2.02 -81.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332322163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.787 kcal (2) G-P(sol) polarization free energy of solvation -79.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds