Wall clock time and date at job start Wed Apr 1 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81408 * 109.47143 * 2 1 4 4 O 1.42105 * 110.54013 * 68.37622 * 3 2 1 5 5 O 1.42096 * 110.54267 * 291.62764 * 3 2 1 6 6 N 1.65597 * 104.45021 * 180.02562 * 3 2 1 7 7 C 1.46961 * 120.59512 * 89.99998 * 6 3 2 8 8 C 1.53374 * 108.63587 * 235.20764 * 7 6 3 9 9 N 1.46966 * 108.63351 * 310.57148 * 8 7 6 10 10 C 1.34773 * 120.59702 * 234.95341 * 9 8 7 11 11 O 1.21285 * 119.99941 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99976 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47465 * 40.00051 * 12 10 9 14 14 N 1.46901 * 109.46910 * 160.00247 * 12 10 9 15 15 C 1.53006 * 109.47095 * 279.99882 * 12 10 9 16 16 C 1.52999 * 109.46749 * 175.00250 * 15 12 10 17 17 C 1.53006 * 109.46749 * 180.02562 * 16 15 12 18 18 C 1.50693 * 109.47229 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99869 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00440 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99569 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00425 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46894 * 59.99961 * 22 20 18 24 24 H 1.48500 * 109.47296 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47287 * 300.00081 * 22 20 18 26 26 C 1.46974 * 118.81028 * 55.22873 * 9 8 7 27 27 C 1.46966 * 120.59213 * 269.98181 * 6 3 2 28 28 H 1.09005 * 109.47385 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.47565 * 59.99531 * 1 2 3 30 30 H 1.08995 * 109.47181 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46803 * 240.00486 * 2 1 3 32 32 H 1.08997 * 109.47205 * 119.99809 * 2 1 3 33 33 H 1.08997 * 109.61217 * 115.46242 * 7 6 3 34 34 H 1.09003 * 109.61309 * 354.94577 * 7 6 3 35 35 H 1.09004 * 109.60939 * 190.83155 * 8 7 6 36 36 H 1.08997 * 109.61082 * 70.31916 * 8 7 6 37 37 H 1.00906 * 110.99681 * 296.03899 * 14 12 10 38 38 H 1.00894 * 111.00555 * 60.00022 * 14 12 10 39 39 H 1.09000 * 109.47011 * 295.00520 * 15 12 10 40 40 H 1.09000 * 109.46819 * 54.99763 * 15 12 10 41 41 H 1.09005 * 109.46981 * 299.99549 * 16 15 12 42 42 H 1.08996 * 109.47375 * 60.00129 * 16 15 12 43 43 H 1.09000 * 109.47011 * 300.00271 * 17 16 15 44 44 H 1.09008 * 109.46754 * 59.99800 * 17 16 15 45 45 H 0.97003 * 119.99932 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.60601 * 64.51973 * 26 9 8 47 47 H 1.08994 * 109.60866 * 185.02664 * 26 9 8 48 48 H 1.09006 * 109.60601 * 244.53937 * 27 6 3 49 49 H 1.08994 * 109.61336 * 5.04360 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2371 5 8 1.8385 2.3439 -1.2369 6 7 3.7843 1.5654 -0.0007 7 6 4.5289 1.5001 -1.2661 8 6 5.3840 0.2269 -1.2664 9 7 6.1297 0.1617 -0.0017 10 6 7.4718 0.0386 -0.0022 11 8 8.0751 -0.0189 -1.0529 12 6 8.2230 -0.0275 1.3026 13 1 7.6651 -0.6382 2.0125 14 7 9.5458 -0.6249 1.0763 15 6 8.3909 1.3849 1.8665 16 6 9.0422 1.3079 3.2488 17 6 9.2096 2.7202 3.8131 18 6 9.8504 2.6445 5.1748 19 1 10.1125 1.6850 5.5956 20 6 10.1022 3.8000 5.8836 21 7 9.7835 4.9684 5.3709 22 14 10.8972 3.7061 7.5713 23 1 12.2287 3.0588 7.4559 24 1 11.0584 5.0768 8.1195 25 1 10.0359 2.9081 8.4805 26 6 5.3851 0.2270 1.2638 27 6 4.5299 1.5001 1.2641 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1739 2.3740 -1.3565 34 1 3.8291 1.4709 -2.1013 35 1 6.0831 0.2560 -2.1022 36 1 4.7388 -0.6471 -1.3562 37 1 9.4622 -1.5810 0.7648 38 1 10.0829 -0.0768 0.4213 39 1 9.0235 1.9698 1.1988 40 1 7.4140 1.8609 1.9510 41 1 8.4094 0.7230 3.9165 42 1 10.0190 0.8319 3.1643 43 1 9.8420 3.3055 3.1455 44 1 8.2324 3.1959 3.8976 45 1 9.9609 5.7814 5.8694 46 1 4.7401 -0.6470 1.3541 47 1 6.0849 0.2561 2.0989 48 1 5.1751 2.3742 1.3538 49 1 3.8309 1.4711 2.0998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341240219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:56 Heat of formation + Delta-G solvation = -110.716787 kcal Electronic energy + Delta-G solvation = -29792.162597 eV Core-core repulsion = 25688.125634 eV Total energy + Delta-G solvation = -4104.036963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.59955 -38.06517 -37.54624 -36.31664 -35.87642 -34.24885 -33.64480 -33.37764 -31.83489 -31.37876 -28.29677 -27.44063 -25.27271 -24.60377 -24.12041 -22.72339 -21.63434 -20.06359 -19.86060 -18.85880 -18.14606 -17.11891 -16.82075 -16.77260 -16.42019 -16.28841 -15.72010 -15.49403 -15.34160 -14.77340 -14.63859 -14.44787 -14.44001 -13.98010 -13.81345 -13.46545 -13.12244 -13.05190 -12.98126 -12.81837 -12.47207 -12.43390 -12.31353 -12.09217 -11.98682 -11.80019 -11.69007 -11.49158 -11.38062 -11.17458 -11.06118 -10.74293 -10.65525 -10.44135 -10.24027 -9.88392 -9.63363 -9.24496 -9.06833 -8.78948 -8.61170 -8.29604 -5.95271 -3.97168 -0.20160 2.12394 2.42174 2.74702 3.36444 3.40909 3.43352 3.43696 3.65999 3.98157 4.17263 4.22433 4.35127 4.48374 4.50734 4.63911 4.65825 4.73073 4.78842 4.84338 4.95277 5.03899 5.05852 5.15457 5.23252 5.29789 5.32788 5.39078 5.40550 5.48240 5.53918 5.67749 5.88149 6.03034 6.07036 6.16205 6.38921 6.77691 6.97005 6.99028 7.17389 7.22006 7.45678 7.73574 7.88648 7.95225 8.05728 8.48729 9.10238 9.66696 11.16069 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002698 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.611278 B =10374.241975 C =11992.233437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.633 4.633 3 S 2.605 3.395 4 O -0.947 6.947 5 O -0.952 6.952 6 N -0.999 5.999 7 C 0.107 3.893 8 C 0.093 3.907 9 N -0.609 5.609 10 C 0.486 3.514 11 O -0.548 6.548 12 C 0.076 3.924 13 H 0.101 0.899 14 N -0.811 5.811 15 C -0.106 4.106 16 C -0.100 4.100 17 C 0.020 3.980 18 C -0.518 4.518 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.086 3.914 27 C 0.102 3.898 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.338 0.662 38 H 0.351 0.649 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.013 0.987 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.139 -14.235 -14.236 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.762 4.762 3 S 2.698 3.302 4 O -0.937 6.937 5 O -0.943 6.943 6 N -0.836 5.836 7 C -0.020 4.020 8 C -0.031 4.031 9 N -0.344 5.344 10 C 0.274 3.726 11 O -0.425 6.425 12 C -0.039 4.039 13 H 0.119 0.881 14 N -0.339 5.339 15 C -0.144 4.144 16 C -0.137 4.137 17 C -0.017 4.017 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.039 4.039 27 C -0.024 4.024 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.165 0.835 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.128 0.872 48 H 0.107 0.893 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.134 -13.131 -13.973 26.391 hybrid contribution 0.164 -0.821 -0.077 0.841 sum -17.970 -13.952 -14.050 26.739 Atomic orbital electron populations 1.21507 0.90440 1.05115 1.03545 1.30585 1.07283 1.26771 1.11576 1.05325 0.72848 0.77534 0.74448 1.93627 1.82885 1.72207 1.44976 1.93598 1.83033 1.72370 1.45277 1.57722 1.24154 1.89694 1.12069 1.21856 0.96155 0.98979 0.84960 1.21990 0.95652 0.97256 0.88227 1.48102 1.06322 1.73208 1.06746 1.22631 0.81795 0.74558 0.93648 1.90665 1.67400 1.50480 1.33936 1.21821 0.90061 1.00112 0.91949 0.88120 1.59046 1.13306 1.06545 1.55022 1.21714 1.01559 0.91376 0.99738 1.21545 0.99915 1.00699 0.91560 1.19110 0.96758 0.90426 0.95389 1.21223 1.39743 0.92481 1.02167 0.92738 1.25026 0.95912 0.95559 0.98024 1.69955 1.48119 0.97449 1.38110 0.86682 0.79977 0.76926 0.84531 1.20272 1.21395 1.20290 1.22312 0.96459 0.98044 0.87058 1.21939 0.96503 0.99036 0.84936 0.90835 0.90976 0.89976 0.85183 0.84972 0.89946 0.88005 0.87794 0.91345 0.85030 0.83513 0.91830 0.91815 0.93672 0.91807 0.96839 0.96919 0.93024 0.90812 0.87196 0.89284 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.92 37.16 0.37 -0.33 16 2 C -0.63 -2.93 6.90 37.16 0.26 -2.68 16 3 S 2.61 22.15 5.42 -107.50 -0.58 21.57 16 4 O -0.95 -11.27 16.70 -57.54 -0.96 -12.23 16 5 O -0.95 -10.85 16.70 -57.54 -0.96 -11.81 16 6 N -1.00 -8.15 3.20 -113.26 -0.36 -8.51 16 7 C 0.11 0.84 6.49 -3.60 -0.02 0.81 16 8 C 0.09 0.75 6.59 -3.59 -0.02 0.73 16 9 N -0.61 -5.87 2.95 -172.48 -0.51 -6.38 16 10 C 0.49 6.05 6.94 -10.99 -0.08 5.98 16 11 O -0.55 -8.39 15.66 5.55 0.09 -8.31 16 12 C 0.08 0.95 2.29 -68.86 -0.16 0.80 16 13 H 0.10 1.09 6.76 -51.93 -0.35 0.74 16 14 N -0.81 -10.41 8.44 -5.65 -0.05 -10.46 16 15 C -0.11 -1.63 4.52 -26.73 -0.12 -1.75 16 16 C -0.10 -1.92 5.04 -26.73 -0.13 -2.06 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.09 0.66 5.91 -3.59 -0.02 0.63 16 27 C 0.10 0.86 6.49 -3.60 -0.02 0.83 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.65 7.06 -51.93 -0.37 0.28 16 35 H 0.10 0.97 6.99 -51.93 -0.36 0.60 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.34 3.72 9.06 -39.29 -0.36 3.37 16 38 H 0.35 4.74 8.58 -39.29 -0.34 4.41 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.91 6.91 -51.93 -0.36 0.55 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.29 7.75 -51.93 -0.40 0.89 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.11 0.87 4.87 -51.93 -0.25 0.62 16 48 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 49 H 0.11 0.78 7.06 -51.93 -0.37 0.42 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -37.13 400.66 -10.27 -47.41 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.19 Total: 2.31 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.51 Total: -10.02 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.18 Total: -51.63 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.83 Total: -32.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 22.15 SS G_CDS: -0.58 Total: 21.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.13 -10.27 -47.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341240219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.311 kcal (2) G-P(sol) polarization free energy of solvation -37.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds