Wall clock time and date at job start Wed Apr 1 2020 05:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81408 * 109.47143 * 2 1 4 4 O 1.42105 * 110.54013 * 68.37622 * 3 2 1 5 5 O 1.42096 * 110.54267 * 291.62764 * 3 2 1 6 6 N 1.65597 * 104.45021 * 180.02562 * 3 2 1 7 7 C 1.46961 * 120.59512 * 89.99998 * 6 3 2 8 8 C 1.53374 * 108.63587 * 235.20764 * 7 6 3 9 9 N 1.46966 * 108.63351 * 310.57148 * 8 7 6 10 10 C 1.34773 * 120.59702 * 234.95341 * 9 8 7 11 11 O 1.21285 * 119.99941 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99976 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47465 * 40.00051 * 12 10 9 14 14 N 1.46901 * 109.46910 * 160.00247 * 12 10 9 15 15 C 1.53006 * 109.47095 * 279.99882 * 12 10 9 16 16 C 1.52999 * 109.46749 * 175.00250 * 15 12 10 17 17 C 1.53006 * 109.46749 * 180.02562 * 16 15 12 18 18 C 1.50693 * 109.47229 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99869 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00440 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99569 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00425 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46894 * 59.99961 * 22 20 18 24 24 H 1.48500 * 109.47296 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47287 * 300.00081 * 22 20 18 26 26 C 1.46974 * 118.81028 * 55.22873 * 9 8 7 27 27 C 1.46966 * 120.59213 * 269.98181 * 6 3 2 28 28 H 1.09005 * 109.47385 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.47565 * 59.99531 * 1 2 3 30 30 H 1.08995 * 109.47181 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46803 * 240.00486 * 2 1 3 32 32 H 1.08997 * 109.47205 * 119.99809 * 2 1 3 33 33 H 1.08997 * 109.61217 * 115.46242 * 7 6 3 34 34 H 1.09003 * 109.61309 * 354.94577 * 7 6 3 35 35 H 1.09004 * 109.60939 * 190.83155 * 8 7 6 36 36 H 1.08997 * 109.61082 * 70.31916 * 8 7 6 37 37 H 1.00906 * 110.99681 * 296.03899 * 14 12 10 38 38 H 1.00894 * 111.00555 * 60.00022 * 14 12 10 39 39 H 1.09000 * 109.47011 * 295.00520 * 15 12 10 40 40 H 1.09000 * 109.46819 * 54.99763 * 15 12 10 41 41 H 1.09005 * 109.46981 * 299.99549 * 16 15 12 42 42 H 1.08996 * 109.47375 * 60.00129 * 16 15 12 43 43 H 1.09000 * 109.47011 * 300.00271 * 17 16 15 44 44 H 1.09008 * 109.46754 * 59.99800 * 17 16 15 45 45 H 0.97003 * 119.99932 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.60601 * 64.51973 * 26 9 8 47 47 H 1.08994 * 109.60866 * 185.02664 * 26 9 8 48 48 H 1.09006 * 109.60601 * 244.53937 * 27 6 3 49 49 H 1.08994 * 109.61336 * 5.04360 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2371 5 8 1.8385 2.3439 -1.2369 6 7 3.7843 1.5654 -0.0007 7 6 4.5289 1.5001 -1.2661 8 6 5.3840 0.2269 -1.2664 9 7 6.1297 0.1617 -0.0017 10 6 7.4718 0.0386 -0.0022 11 8 8.0751 -0.0189 -1.0529 12 6 8.2230 -0.0275 1.3026 13 1 7.6651 -0.6382 2.0125 14 7 9.5458 -0.6249 1.0763 15 6 8.3909 1.3849 1.8665 16 6 9.0422 1.3079 3.2488 17 6 9.2096 2.7202 3.8131 18 6 9.8504 2.6445 5.1748 19 1 10.1125 1.6850 5.5956 20 6 10.1022 3.8000 5.8836 21 7 9.7835 4.9684 5.3709 22 14 10.8972 3.7061 7.5713 23 1 12.2287 3.0588 7.4559 24 1 11.0584 5.0768 8.1195 25 1 10.0359 2.9081 8.4805 26 6 5.3851 0.2270 1.2638 27 6 4.5299 1.5001 1.2641 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1739 2.3740 -1.3565 34 1 3.8291 1.4709 -2.1013 35 1 6.0831 0.2560 -2.1022 36 1 4.7388 -0.6471 -1.3562 37 1 9.4622 -1.5810 0.7648 38 1 10.0829 -0.0768 0.4213 39 1 9.0235 1.9698 1.1988 40 1 7.4140 1.8609 1.9510 41 1 8.4094 0.7230 3.9165 42 1 10.0190 0.8319 3.1643 43 1 9.8420 3.3055 3.1455 44 1 8.2324 3.1959 3.8976 45 1 9.9609 5.7814 5.8694 46 1 4.7401 -0.6470 1.3541 47 1 6.0849 0.2561 2.0989 48 1 5.1751 2.3742 1.3538 49 1 3.8309 1.4711 2.0998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341240219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:55 Heat of formation + Delta-G solvation = -140.275390 kcal Electronic energy + Delta-G solvation = -29793.444354 eV Core-core repulsion = 25688.125634 eV Total energy + Delta-G solvation = -4105.318721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.48511 -38.86232 -38.30931 -37.18830 -37.07897 -35.27762 -34.97469 -34.02064 -33.11458 -32.49678 -29.64700 -28.47331 -26.62434 -25.03519 -25.02768 -24.03163 -22.56012 -21.69736 -20.61895 -19.58611 -18.97145 -18.41537 -17.92277 -17.51719 -17.45667 -17.21176 -16.78954 -16.45494 -16.33942 -15.92790 -15.58114 -15.37420 -15.21133 -15.08390 -14.57822 -14.41145 -14.25262 -14.07692 -13.70540 -13.63684 -13.59964 -13.41358 -13.26118 -13.13606 -13.02690 -12.79262 -12.59039 -12.46423 -12.42586 -12.39325 -12.35391 -12.13084 -12.08045 -11.62366 -11.42050 -11.34297 -11.21151 -10.92779 -10.56359 -10.49478 -9.66568 -9.51062 -8.15049 -6.25388 -0.81812 1.42520 1.45365 1.45758 1.48176 1.53467 1.98916 2.44960 2.85860 3.05668 3.18293 3.35298 3.48016 3.65129 3.75903 3.80157 3.91242 3.97142 4.12181 4.14321 4.16784 4.22381 4.34025 4.40970 4.51956 4.59819 4.64323 4.69180 4.71961 4.82688 4.83956 4.89365 4.93011 5.06664 5.13007 5.15623 5.29831 5.37098 5.40752 5.43542 5.63090 5.86905 5.96487 6.04413 6.28354 6.32450 6.49215 6.92939 7.03729 7.43788 8.96488 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002698 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.611278 B =10374.241975 C =11992.233437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.601 4.601 3 S 2.600 3.400 4 O -0.991 6.991 5 O -0.991 6.991 6 N -0.999 5.999 7 C 0.108 3.892 8 C 0.094 3.906 9 N -0.604 5.604 10 C 0.486 3.514 11 O -0.581 6.581 12 C 0.085 3.915 13 H 0.127 0.873 14 N -0.818 5.818 15 C -0.095 4.095 16 C -0.082 4.082 17 C 0.022 3.978 18 C -0.538 4.538 19 H 0.062 0.938 20 C -0.003 4.003 21 N -0.936 5.936 22 Si 0.962 3.038 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.263 1.263 26 C 0.084 3.916 27 C 0.098 3.902 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.350 0.650 38 H 0.344 0.656 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.055 0.945 43 H -0.020 1.020 44 H -0.007 1.007 45 H 0.262 0.738 46 H 0.115 0.885 47 H 0.108 0.892 48 H 0.062 0.938 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.446 -17.560 -13.527 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.735 4.735 3 S 2.699 3.301 4 O -0.981 6.981 5 O -0.982 6.982 6 N -0.836 5.836 7 C -0.019 4.019 8 C -0.030 4.030 9 N -0.336 5.336 10 C 0.273 3.727 11 O -0.462 6.462 12 C -0.030 4.030 13 H 0.145 0.855 14 N -0.347 5.347 15 C -0.134 4.134 16 C -0.120 4.120 17 C -0.015 4.015 18 C -0.576 4.576 19 H 0.080 0.920 20 C -0.201 4.201 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.194 1.194 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.040 4.040 27 C -0.028 4.028 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.074 0.926 43 H -0.002 1.002 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.133 0.867 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.458 -16.428 -13.258 28.710 hybrid contribution 0.479 0.220 -0.326 0.620 sum -18.979 -16.208 -13.584 28.415 Atomic orbital electron populations 1.21699 0.90362 1.06535 1.03498 1.30323 1.07106 1.21666 1.14413 1.05301 0.72608 0.79420 0.72820 1.93568 1.83387 1.74839 1.46324 1.93543 1.83444 1.74861 1.46319 1.57579 1.24014 1.90103 1.11905 1.21848 0.96249 0.98237 0.85519 1.22124 0.95474 0.98484 0.86899 1.48162 1.05657 1.71566 1.08254 1.22460 0.82721 0.74653 0.92865 1.90655 1.68336 1.52344 1.34821 1.21671 0.90482 0.98219 0.92674 0.85537 1.59050 1.13427 1.07272 1.54982 1.21499 1.01103 0.93605 0.97164 1.21274 1.00279 0.96726 0.93698 1.19044 0.94623 0.93485 0.94320 1.21708 1.39671 0.92864 1.03310 0.92022 1.25987 0.96499 0.95148 1.02429 1.70102 1.49440 0.98238 1.39936 0.85545 0.79267 0.77114 0.79393 1.19362 1.21215 1.18805 1.22530 0.96574 0.99011 0.85891 1.21950 0.96640 0.98650 0.85569 0.91202 0.91107 0.87635 0.82320 0.82260 0.92274 0.86341 0.89253 0.87727 0.83689 0.84222 0.94017 0.90932 0.92085 0.92604 1.00170 0.98905 0.92981 0.86710 0.87379 0.91979 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.92 71.98 0.71 -0.31 16 2 C -0.60 -3.13 6.90 71.98 0.50 -2.63 16 3 S 2.60 41.36 5.42 -56.49 -0.31 41.05 16 4 O -0.99 -23.60 16.70 -127.65 -2.13 -25.73 16 5 O -0.99 -22.43 16.70 -127.65 -2.13 -24.56 16 6 N -1.00 -15.14 3.20 -512.24 -1.64 -16.78 16 7 C 0.11 1.60 6.49 86.42 0.56 2.16 16 8 C 0.09 1.31 6.59 86.42 0.57 1.88 16 9 N -0.60 -10.38 2.95 -817.99 -2.41 -12.80 16 10 C 0.49 11.52 6.94 87.66 0.61 12.13 16 11 O -0.58 -17.62 15.66 -3.04 -0.05 -17.67 16 12 C 0.09 2.01 2.29 44.17 0.10 2.11 16 13 H 0.13 2.35 6.76 -2.39 -0.02 2.34 16 14 N -0.82 -20.22 8.44 -171.79 -1.45 -21.67 16 15 C -0.10 -2.95 4.52 30.60 0.14 -2.82 16 16 C -0.08 -3.17 5.04 30.60 0.15 -3.02 16 17 C 0.02 1.16 4.97 29.85 0.15 1.31 16 18 C -0.54 -30.49 9.11 25.60 0.23 -30.25 16 19 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 20 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 21 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 22 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 25 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 26 C 0.08 1.04 5.91 86.41 0.51 1.55 16 27 C 0.10 1.55 6.49 86.41 0.56 2.11 16 28 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 1.36 7.06 -2.39 -0.02 1.35 16 35 H 0.09 1.57 6.99 -2.39 -0.02 1.55 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.35 7.16 9.06 -89.69 -0.81 6.35 16 38 H 0.34 9.34 8.58 -89.70 -0.77 8.57 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 2.10 6.91 -2.39 -0.02 2.08 16 41 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 43 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 44 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 45 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.11 1.41 4.87 -2.39 -0.01 1.40 16 48 H 0.06 1.29 8.04 -2.38 -0.02 1.27 16 49 H 0.12 1.59 7.06 -2.39 -0.02 1.58 16 Total: -1.00 -83.75 400.66 -3.17 -86.92 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.62 Total: 17.76 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 5.26 Total: -15.51 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -5.21 Total: -108.75 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -4.31 Total: -67.96 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 41.36 SS G_CDS: -0.31 Total: 41.05 kcal Total: -83.75 -3.17 -86.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341240219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.355 kcal (2) G-P(sol) polarization free energy of solvation -83.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds