Wall clock time and date at job start Wed Apr 1 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47190 * 2 1 4 4 C 1.46495 * 120.00350 * 269.99948 * 3 2 1 5 5 C 1.50697 * 109.47291 * 270.00267 * 4 3 2 6 6 H 1.08004 * 119.99698 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00276 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99798 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99624 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47034 * 90.00750 * 9 7 5 11 11 H 1.48504 * 109.47033 * 210.00231 * 9 7 5 12 12 H 1.48496 * 109.47513 * 330.00074 * 9 7 5 13 13 C 1.34780 * 119.99469 * 89.99715 * 3 2 1 14 14 O 1.21285 * 119.99769 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00426 * 0.02562 * 13 3 2 16 16 N 1.46909 * 109.47305 * 179.97438 * 15 13 3 17 17 C 1.47897 * 111.00097 * 287.39790 * 16 15 13 18 18 C 1.54293 * 107.08729 * 214.00589 * 17 16 15 19 19 H 1.09005 * 110.28615 * 120.27058 * 18 17 16 20 20 C 1.53000 * 110.47737 * 242.53461 * 18 17 16 21 21 C 1.54599 * 104.98943 * 1.45158 * 18 17 16 22 22 H 1.08995 * 110.72181 * 263.30555 * 21 18 17 23 23 C 1.53006 * 110.72119 * 140.20043 * 21 18 17 24 24 S 1.81399 * 109.47007 * 177.44768 * 23 21 18 25 25 N 1.65591 * 104.45014 * 179.97438 * 24 23 21 26 26 O 1.42097 * 110.54866 * 291.62907 * 24 23 21 27 27 O 1.42107 * 110.53812 * 68.37457 * 24 23 21 28 28 C 1.48528 * 110.99967 * 170.00122 * 16 15 13 29 29 H 1.09001 * 109.47348 * 59.99441 * 1 2 3 30 30 H 1.08994 * 109.47632 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47695 * 300.00083 * 1 2 3 32 32 H 1.08994 * 109.47255 * 239.99941 * 2 1 3 33 33 H 1.08999 * 109.46961 * 119.99891 * 2 1 3 34 34 H 1.09000 * 109.46904 * 30.00056 * 4 3 2 35 35 H 1.09004 * 109.47166 * 149.99653 * 4 3 2 36 36 H 0.97003 * 119.99496 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46982 * 60.00061 * 15 13 3 38 38 H 1.08991 * 109.47583 * 299.99720 * 15 13 3 39 39 H 1.09003 * 109.92192 * 333.51062 * 17 16 15 40 40 H 1.09005 * 109.92153 * 94.60205 * 17 16 15 41 41 H 1.08998 * 109.46995 * 175.63156 * 20 18 17 42 42 H 1.09001 * 109.47130 * 295.63364 * 20 18 17 43 43 H 1.08998 * 109.47294 * 55.63635 * 20 18 17 44 44 H 1.08993 * 109.46955 * 297.45253 * 23 21 18 45 45 H 1.09000 * 109.47050 * 57.45082 * 23 21 18 46 46 H 0.97000 * 120.00065 * 0.02562 * 25 24 23 47 47 H 0.97004 * 120.00379 * 180.02562 * 25 24 23 48 48 H 1.08999 * 110.67236 * 41.28712 * 28 16 15 49 49 H 1.09000 * 110.80939 * 278.22147 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1494 2.3906 -2.8774 8 7 5.3917 2.1843 -3.2567 9 14 3.0131 3.4362 -3.9285 10 1 3.1159 4.8563 -3.5066 11 1 3.4067 3.3140 -5.3552 12 1 1.6135 2.9696 -3.7595 13 6 2.2428 2.0165 1.1673 14 8 2.6476 3.1598 1.1674 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5890 17 6 3.7725 2.3872 3.7231 18 6 4.0740 2.5410 5.2284 19 1 4.7519 1.7546 5.5604 20 6 4.6752 3.9182 5.5159 21 6 2.7026 2.3977 5.9276 22 1 2.2707 3.3769 6.1340 23 6 2.8345 1.5837 7.2165 24 16 1.2237 1.5006 8.0466 25 7 1.5067 0.6023 9.4086 26 8 0.8507 2.7795 8.5409 27 8 0.3135 0.7132 7.2909 28 6 1.8536 1.6333 4.8810 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1383 36 1 5.7177 2.5748 -4.0826 37 1 2.6227 0.4187 2.5299 38 1 0.9444 1.0114 2.5303 39 1 4.2929 1.5159 3.3253 40 1 4.0862 3.2832 3.1876 41 1 4.8096 4.0389 6.5908 42 1 5.6406 4.0046 5.0171 43 1 4.0039 4.6925 5.1445 44 1 3.1722 0.5756 6.9766 45 1 3.5587 2.0622 7.8758 46 1 2.3969 0.2618 9.5888 47 1 0.7822 0.4165 10.0263 48 1 2.0618 0.5643 4.9234 49 1 0.7913 1.8235 5.0345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364527467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:57 Heat of formation + Delta-G solvation = -134.528608 kcal Electronic energy + Delta-G solvation = -29739.967715 eV Core-core repulsion = 25634.898193 eV Total energy + Delta-G solvation = -4105.069521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.16147 -39.90247 -37.99659 -36.96236 -36.90547 -35.18234 -34.73100 -33.97649 -32.56054 -31.91304 -30.27684 -28.61891 -27.49114 -25.56735 -24.37937 -23.69025 -22.25118 -21.23791 -20.34764 -19.73656 -19.11372 -18.49712 -18.19062 -17.98490 -17.36217 -17.13564 -16.73200 -16.39781 -16.25220 -15.95713 -15.63758 -15.24323 -14.85643 -14.71874 -14.67909 -14.36684 -14.05773 -13.84077 -13.77819 -13.62824 -13.35963 -13.19456 -13.12551 -13.10308 -13.01079 -12.94038 -12.75174 -12.60594 -12.54361 -12.39356 -12.13413 -12.04044 -11.89764 -11.75021 -11.73168 -11.64728 -11.22832 -11.20907 -10.84179 -10.61050 -9.41896 -9.38021 -8.35395 -6.39541 -0.69309 1.30780 1.34984 1.43196 1.83794 2.01939 2.18975 2.29553 2.72738 2.95724 2.99354 3.32229 3.37720 3.56496 3.59175 3.76665 4.02213 4.06064 4.13367 4.22382 4.28472 4.32625 4.42915 4.43580 4.57166 4.58873 4.63813 4.65834 4.78533 4.81031 4.90443 4.95515 4.97378 4.99561 5.01216 5.14894 5.17794 5.33476 5.38295 5.40913 5.46353 5.65917 5.83297 5.90172 6.24536 6.42206 6.60913 6.74688 7.21543 7.48318 8.81484 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002507 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.314417 B =11167.354124 C =12035.009563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.240 1.240 13 C 0.498 3.502 14 O -0.577 6.577 15 C 0.039 3.961 16 N -0.519 5.519 17 C 0.039 3.961 18 C -0.077 4.077 19 H 0.110 0.890 20 C -0.147 4.147 21 C -0.082 4.082 22 H 0.093 0.907 23 C -0.592 4.592 24 S 2.617 3.383 25 N -1.240 6.240 26 O -1.010 7.010 27 O -0.997 6.997 28 C 0.017 3.983 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.172 0.828 45 H 0.175 0.825 46 H 0.428 0.572 47 H 0.424 0.576 48 H 0.080 0.920 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 -8.813 27.131 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.198 1.198 12 H -0.164 1.164 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.092 4.092 16 N -0.243 5.243 17 C -0.089 4.089 18 C -0.097 4.097 19 H 0.128 0.872 20 C -0.204 4.204 21 C -0.103 4.103 22 H 0.112 0.888 23 C -0.724 4.724 24 S 2.712 3.288 25 N -0.917 5.917 26 O -0.999 6.999 27 O -0.986 6.986 28 C -0.110 4.110 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.190 0.810 45 H 0.193 0.807 46 H 0.258 0.742 47 H 0.254 0.746 48 H 0.098 0.902 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.775 -7.226 26.450 28.500 hybrid contribution 1.226 -0.370 -0.795 1.507 sum -6.549 -7.595 25.654 27.545 Atomic orbital electron populations 1.22164 0.94096 1.03652 1.02021 1.21760 0.95546 0.81156 1.03877 1.48072 1.64620 1.15189 1.05726 1.19250 0.94812 0.92855 0.82623 1.21532 0.96956 1.31919 1.06598 0.95281 1.25814 0.96679 0.97169 0.98951 1.70044 1.17292 1.46626 1.24509 0.85746 0.80486 0.79002 0.77902 1.20392 1.19831 1.16355 1.21137 0.77232 0.86735 0.86229 1.90628 1.46845 1.20317 1.87791 1.22232 1.04682 0.94084 0.88226 1.64342 1.13574 1.44035 1.02348 1.23055 0.87607 1.00782 0.97465 1.22055 0.95672 1.00093 0.91841 0.87174 1.21874 1.00504 0.95238 1.02795 1.21885 0.97402 0.99175 0.91842 0.88823 1.30281 1.22037 1.11957 1.08108 1.04315 0.76983 0.73250 0.74268 1.52784 1.21812 1.74008 1.43127 1.93575 1.82472 1.44545 1.79337 1.93585 1.62166 1.70235 1.72615 1.23735 1.00492 0.98768 0.87990 0.93552 0.88646 0.92176 0.90884 0.88738 0.93575 0.96786 0.92286 0.89852 0.85631 0.94231 0.92741 0.89783 0.92587 0.93813 0.81030 0.80673 0.74232 0.74570 0.90190 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.96 16 2 C 0.10 2.92 5.93 86.38 0.51 3.43 16 3 N -0.60 -25.01 2.46 -826.18 -2.03 -27.04 16 4 C 0.23 11.37 4.23 85.63 0.36 11.74 16 5 C -0.53 -31.71 9.94 25.60 0.25 -31.45 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.71 5.47 84.65 0.46 1.17 16 8 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 9 Si 0.95 45.48 27.47 68.60 1.88 47.36 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 13 C 0.50 20.85 7.50 87.65 0.66 21.50 16 14 O -0.58 -30.04 14.87 -3.05 -0.05 -30.09 16 15 C 0.04 1.13 3.83 85.55 0.33 1.46 16 16 N -0.52 -15.13 4.91 -886.97 -4.35 -19.48 16 17 C 0.04 1.12 5.54 86.55 0.48 1.60 16 18 C -0.08 -1.39 3.18 -9.81 -0.03 -1.42 16 19 H 0.11 1.34 7.85 -2.38 -0.02 1.33 16 20 C -0.15 -2.69 8.90 71.98 0.64 -2.04 16 21 C -0.08 -1.33 2.60 -9.59 -0.02 -1.35 16 22 H 0.09 1.70 7.86 -2.39 -0.02 1.69 16 23 C -0.59 -3.66 5.44 71.98 0.39 -3.27 16 24 S 2.62 32.44 5.79 -56.49 -0.33 32.11 16 25 N -1.24 -5.43 9.43 37.02 0.35 -5.08 16 26 O -1.01 -22.10 18.10 -127.65 -2.31 -24.41 16 27 O -1.00 -19.99 16.89 -127.65 -2.16 -22.15 16 28 C 0.02 0.36 5.00 86.65 0.43 0.79 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 32 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 33 H 0.09 2.22 6.44 -2.39 -0.02 2.20 16 34 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 35 H 0.01 0.77 6.85 -2.39 -0.02 0.75 16 36 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.08 2.07 6.99 -2.38 -0.02 2.06 16 38 H 0.13 2.98 7.13 -2.39 -0.02 2.96 16 39 H 0.04 1.14 7.52 -2.39 -0.02 1.12 16 40 H 0.05 2.03 7.08 -2.38 -0.02 2.01 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.17 0.00 8.05 -2.39 -0.02 -0.02 16 45 H 0.18 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.43 -1.23 8.83 -96.75 -0.85 -2.08 16 47 H 0.42 1.63 8.96 -96.74 -0.87 0.76 16 48 H 0.08 1.25 7.86 -2.39 -0.02 1.23 16 49 H 0.09 1.90 7.66 -2.39 -0.02 1.88 16 Total: -1.00 -95.32 399.16 -4.30 -99.62 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -0.82 Total: 9.84 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.20 Total: -0.80 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -5.73 Total: -111.49 kcal Atomic # 8 Polarization: -72.14 SS G_CDS: -4.51 Total: -76.65 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Atomic # 16 Polarization: 32.44 SS G_CDS: -0.33 Total: 32.11 kcal Total: -95.32 -4.30 -99.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364527467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.905 kcal (2) G-P(sol) polarization free energy of solvation -95.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds