Wall clock time and date at job start Wed Apr 1 2020 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46963 * 2 1 4 4 C 1.46495 * 120.00038 * 274.18754 * 3 2 1 5 5 C 1.50706 * 109.46671 * 270.00011 * 4 3 2 6 6 H 1.07996 * 120.00417 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99509 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00158 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99760 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47001 * 60.00086 * 9 7 5 11 11 H 1.48504 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47308 * 299.99831 * 9 7 5 13 13 C 1.34776 * 119.99824 * 94.18622 * 3 2 1 14 14 O 1.21284 * 119.99682 * 184.76226 * 13 3 2 15 15 C 1.50704 * 120.00065 * 5.03587 * 13 3 2 16 16 N 1.46895 * 109.46877 * 178.01281 * 15 13 3 17 17 C 1.46847 * 111.00105 * 74.52267 * 16 15 13 18 18 C 1.53037 * 109.52352 * 185.83636 * 17 16 15 19 19 C 1.53116 * 109.28218 * 300.82208 * 18 17 16 20 20 C 1.53120 * 109.16199 * 57.64997 * 19 18 17 21 21 C 1.46847 * 111.00134 * 198.73073 * 16 15 13 22 22 H 1.09004 * 109.46347 * 294.17763 * 21 16 15 23 23 C 1.53007 * 109.46240 * 54.14381 * 21 16 15 24 24 S 1.81401 * 109.46862 * 60.25481 * 23 21 16 25 25 N 1.65596 * 104.44948 * 188.12643 * 24 23 21 26 26 O 1.42106 * 110.54350 * 299.75130 * 24 23 21 27 27 O 1.42104 * 110.54197 * 76.50539 * 24 23 21 28 28 H 1.08999 * 109.47645 * 299.99939 * 1 2 3 29 29 H 1.08996 * 109.47019 * 60.00015 * 1 2 3 30 30 H 1.08995 * 109.47090 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47202 * 240.00119 * 2 1 3 32 32 H 1.09000 * 109.47070 * 119.99482 * 2 1 3 33 33 H 1.08998 * 109.47123 * 29.99625 * 4 3 2 34 34 H 1.08993 * 109.47511 * 150.00023 * 4 3 2 35 35 H 0.97000 * 119.99834 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47141 * 298.01411 * 15 13 3 37 37 H 1.09001 * 109.47117 * 58.01232 * 15 13 3 38 38 H 1.08997 * 109.46161 * 305.85250 * 17 16 15 39 39 H 1.09001 * 109.46553 * 65.83412 * 17 16 15 40 40 H 1.09001 * 109.50477 * 60.76169 * 18 17 16 41 41 H 1.09003 * 109.50576 * 180.83858 * 18 17 16 42 42 H 1.08994 * 109.52933 * 177.55872 * 19 18 17 43 43 H 1.08999 * 109.51987 * 297.68743 * 19 18 17 44 44 H 1.09006 * 109.50123 * 62.29265 * 20 19 18 45 45 H 1.08999 * 109.50631 * 182.40267 * 20 19 18 46 46 H 1.08993 * 109.47435 * 180.25654 * 23 21 16 47 47 H 1.09001 * 109.46884 * 300.26232 * 23 21 16 48 48 H 0.96998 * 119.99981 * 149.99975 * 25 24 23 49 49 H 0.97001 * 119.99890 * 330.00375 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1751 2.1028 -1.2653 5 6 3.5650 1.8778 -1.8028 6 1 4.2616 1.2590 -1.2568 7 6 3.9468 2.4612 -2.9923 8 7 3.0980 3.2136 -3.6580 9 14 5.6697 2.1830 -3.6583 10 1 5.8840 0.7312 -3.8857 11 1 5.8282 2.9132 -4.9417 12 1 6.6663 2.6828 -2.6774 13 6 2.3233 1.9882 1.1641 14 8 2.6446 3.1577 1.1722 15 6 2.2709 1.2121 2.4549 16 7 2.6894 2.0788 3.5646 17 6 1.6362 3.0441 3.9044 18 6 2.1588 4.0206 4.9605 19 6 2.5817 3.2384 6.2071 20 6 3.6440 2.2071 5.8169 21 6 3.0783 1.2832 4.7360 22 1 2.2052 0.7600 5.1259 23 6 4.1436 0.2632 4.3285 24 16 5.5996 1.1337 3.6858 25 7 6.5655 -0.0677 3.0809 26 8 5.2536 1.9114 2.5479 27 8 6.3581 1.6904 4.7507 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.4434 1.7367 -1.9854 34 1 2.0184 3.1683 -1.0979 35 1 3.3668 3.6244 -4.4947 36 1 1.2525 0.8649 2.6290 37 1 2.9411 0.3548 2.3908 38 1 1.3476 3.5965 3.0102 39 1 0.7698 2.5128 4.2984 40 1 3.0168 4.5623 4.5625 41 1 1.3721 4.7277 5.2234 42 1 2.9949 3.9254 6.9455 43 1 1.7153 2.7287 6.6285 44 1 4.5255 2.7202 5.4323 45 1 3.9182 1.6181 6.6921 46 1 4.4292 -0.3304 5.1968 47 1 3.7420 -0.3926 3.5560 48 1 7.1546 0.1145 2.3321 49 1 6.5423 -0.9535 3.4754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365322880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:09 Heat of formation + Delta-G solvation = -92.718027 kcal Electronic energy + Delta-G solvation = -31559.010804 eV Core-core repulsion = 27455.754325 eV Total energy + Delta-G solvation = -4103.256479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.91131 -38.27519 -36.76085 -35.59022 -35.09469 -33.76243 -33.14353 -32.80160 -32.54087 -29.98598 -28.39467 -27.57247 -26.17355 -23.53675 -22.93143 -22.38222 -21.65065 -20.07000 -19.23344 -18.21234 -17.40193 -17.25175 -16.84375 -16.24107 -15.99416 -15.86956 -15.17442 -15.06329 -14.91835 -14.52853 -14.32788 -14.10184 -13.89428 -13.58928 -13.27228 -13.01885 -12.69525 -12.61450 -12.46053 -12.21222 -12.13663 -11.91536 -11.72421 -11.66161 -11.57205 -11.47440 -11.26314 -11.08343 -10.84091 -10.76991 -10.69405 -10.60812 -10.48083 -10.45179 -10.33706 -10.31336 -10.00755 -9.49594 -8.77420 -8.31024 -8.14515 -7.46571 -5.92084 -3.95118 0.36066 3.01051 3.38955 3.43928 3.45086 3.50888 3.69224 3.82602 4.11993 4.15829 4.32862 4.56218 4.69392 4.78290 4.90086 4.97355 5.09163 5.14516 5.20790 5.30444 5.34289 5.36024 5.42406 5.48644 5.56800 5.62405 5.68876 5.77265 5.80349 5.83138 5.85769 5.95480 6.03661 6.05983 6.22806 6.28192 6.39091 6.50551 6.92283 7.04110 7.05769 7.24575 7.60148 7.72778 8.06204 8.38466 8.61268 9.06084 9.35636 9.69500 11.16027 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.004444 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.943188 B = 6299.335503 C = 7441.377797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.606 5.606 4 C 0.250 3.750 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.515 3.485 14 O -0.506 6.506 15 C 0.033 3.967 16 N -0.516 5.516 17 C 0.061 3.939 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.138 4.138 21 C 0.101 3.899 22 H 0.064 0.936 23 C -0.637 4.637 24 S 2.608 3.392 25 N -1.259 6.259 26 O -0.900 6.900 27 O -0.968 6.968 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.029 0.971 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.421 0.579 49 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 -10.984 19.730 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.340 5.340 4 C 0.131 3.869 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.300 3.700 14 O -0.380 6.380 15 C -0.097 4.097 16 N -0.242 5.242 17 C -0.066 4.066 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.176 4.176 21 C -0.009 4.009 22 H 0.081 0.919 23 C -0.764 4.764 24 S 2.696 3.304 25 N -0.931 5.931 26 O -0.889 6.889 27 O -0.958 6.958 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.153 0.847 47 H 0.154 0.846 48 H 0.251 0.749 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.906 -8.851 19.464 21.467 hybrid contribution 0.162 -1.913 -0.270 1.939 sum -1.744 -10.765 19.194 22.076 Atomic orbital electron populations 1.22209 0.96996 1.01129 1.02313 1.21351 0.93415 0.84842 1.02126 1.48200 1.64689 1.13086 1.08010 1.19188 0.96454 0.93172 0.78105 1.21441 0.98357 1.30386 1.05586 0.92416 1.24915 0.97340 0.95086 0.96806 1.69928 1.35066 1.32677 1.16101 0.86606 0.85076 0.77988 0.78027 1.20428 1.21336 1.20063 1.19820 0.78291 0.87831 0.84080 1.90655 1.45121 1.16171 1.86034 1.22157 0.99772 0.95974 0.91845 1.61614 1.41967 1.16135 1.04446 1.22151 0.90598 0.93758 1.00068 1.21635 1.02107 0.97742 0.94413 1.21535 0.98060 0.97724 0.98050 1.22020 0.99962 0.97846 0.97758 1.21269 0.95973 0.91853 0.91823 0.91857 1.30747 1.20045 1.12413 1.13240 1.05250 0.75452 0.74123 0.75528 1.53500 1.61017 1.28237 1.50334 1.93819 1.82795 1.64934 1.47338 1.93588 1.68075 1.74965 1.59135 0.93332 0.91895 0.92421 0.90197 0.92362 0.95354 0.93898 0.92870 0.92479 0.89187 0.88637 0.95288 0.90273 0.91255 0.91275 0.92115 0.90106 0.90353 0.84690 0.84591 0.74933 0.76926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.71 6.05 -4.04 -0.02 1.69 16 3 N -0.61 -13.03 2.46 -175.06 -0.43 -13.46 16 4 C 0.25 6.69 5.22 -5.19 -0.03 6.66 16 5 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 9 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.51 11.03 7.39 -10.98 -0.08 10.95 16 14 O -0.51 -13.20 14.54 5.55 0.08 -13.12 16 15 C 0.03 0.51 3.15 -4.98 -0.02 0.50 16 16 N -0.52 -7.70 2.80 -228.12 -0.64 -8.34 16 17 C 0.06 0.86 5.11 -3.83 -0.02 0.84 16 18 C -0.12 -1.48 6.09 -26.65 -0.16 -1.65 16 19 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 20 C -0.14 -1.53 4.96 -26.65 -0.13 -1.66 16 21 C 0.10 1.12 2.13 -67.72 -0.14 0.98 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 C -0.64 -5.89 5.43 37.16 0.20 -5.69 16 24 S 2.61 35.32 5.10 -107.50 -0.55 34.77 16 25 N -1.26 -12.37 9.36 60.35 0.57 -11.80 16 26 O -0.90 -17.56 16.41 -57.54 -0.94 -18.50 16 27 O -0.97 -15.31 16.36 -57.54 -0.94 -16.25 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.06 0.74 6.25 -51.93 -0.32 0.42 16 33 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.06 0.73 7.97 -51.93 -0.41 0.31 16 37 H 0.09 1.19 4.65 -51.93 -0.24 0.95 16 38 H 0.10 1.62 6.54 -51.93 -0.34 1.28 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 1.09 5.79 -51.93 -0.30 0.79 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.14 1.03 5.93 -51.92 -0.31 0.73 16 48 H 0.42 4.21 8.96 -34.47 -0.31 3.90 16 49 H 0.41 2.39 8.96 -34.47 -0.31 2.08 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -40.11 392.09 -9.80 -49.91 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.96 Total: 4.34 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.60 Total: -4.37 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.23 Total: -60.21 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.80 Total: -47.87 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 35.32 SS G_CDS: -0.55 Total: 34.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.11 -9.80 -49.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365322880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.804 kcal (2) G-P(sol) polarization free energy of solvation -40.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds