Wall clock time and date at job start Wed Apr 1 2020 04:44:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46508 * 109.46963 * 2 1
4 4 C 1.46495 * 120.00038 * 274.18754 * 3 2 1
5 5 C 1.50706 * 109.46671 * 270.00011 * 4 3 2
6 6 H 1.07996 * 120.00417 * 0.02562 * 5 4 3
7 7 C 1.37879 * 119.99509 * 179.97438 * 5 4 3
8 8 N 1.31518 * 120.00158 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 119.99760 * 179.97438 * 7 5 4
10 10 H 1.48502 * 109.47001 * 60.00086 * 9 7 5
11 11 H 1.48504 * 109.47019 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47308 * 299.99831 * 9 7 5
13 13 C 1.34776 * 119.99824 * 94.18622 * 3 2 1
14 14 O 1.21284 * 119.99682 * 184.76226 * 13 3 2
15 15 C 1.50704 * 120.00065 * 5.03587 * 13 3 2
16 16 N 1.46895 * 109.46877 * 178.01281 * 15 13 3
17 17 C 1.46847 * 111.00105 * 74.52267 * 16 15 13
18 18 C 1.53037 * 109.52352 * 185.83636 * 17 16 15
19 19 C 1.53116 * 109.28218 * 300.82208 * 18 17 16
20 20 C 1.53120 * 109.16199 * 57.64997 * 19 18 17
21 21 C 1.46847 * 111.00134 * 198.73073 * 16 15 13
22 22 H 1.09004 * 109.46347 * 294.17763 * 21 16 15
23 23 C 1.53007 * 109.46240 * 54.14381 * 21 16 15
24 24 S 1.81401 * 109.46862 * 60.25481 * 23 21 16
25 25 N 1.65596 * 104.44948 * 188.12643 * 24 23 21
26 26 O 1.42106 * 110.54350 * 299.75130 * 24 23 21
27 27 O 1.42104 * 110.54197 * 76.50539 * 24 23 21
28 28 H 1.08999 * 109.47645 * 299.99939 * 1 2 3
29 29 H 1.08996 * 109.47019 * 60.00015 * 1 2 3
30 30 H 1.08995 * 109.47090 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.47202 * 240.00119 * 2 1 3
32 32 H 1.09000 * 109.47070 * 119.99482 * 2 1 3
33 33 H 1.08998 * 109.47123 * 29.99625 * 4 3 2
34 34 H 1.08993 * 109.47511 * 150.00023 * 4 3 2
35 35 H 0.97000 * 119.99834 * 179.97438 * 8 7 5
36 36 H 1.08995 * 109.47141 * 298.01411 * 15 13 3
37 37 H 1.09001 * 109.47117 * 58.01232 * 15 13 3
38 38 H 1.08997 * 109.46161 * 305.85250 * 17 16 15
39 39 H 1.09001 * 109.46553 * 65.83412 * 17 16 15
40 40 H 1.09001 * 109.50477 * 60.76169 * 18 17 16
41 41 H 1.09003 * 109.50576 * 180.83858 * 18 17 16
42 42 H 1.08994 * 109.52933 * 177.55872 * 19 18 17
43 43 H 1.08999 * 109.51987 * 297.68743 * 19 18 17
44 44 H 1.09006 * 109.50123 * 62.29265 * 20 19 18
45 45 H 1.08999 * 109.50631 * 182.40267 * 20 19 18
46 46 H 1.08993 * 109.47435 * 180.25654 * 23 21 16
47 47 H 1.09001 * 109.46884 * 300.26232 * 23 21 16
48 48 H 0.96998 * 119.99981 * 149.99975 * 25 24 23
49 49 H 0.97001 * 119.99890 * 330.00375 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1751 2.1028 -1.2653
5 6 3.5650 1.8778 -1.8028
6 1 4.2616 1.2590 -1.2568
7 6 3.9468 2.4612 -2.9923
8 7 3.0980 3.2136 -3.6580
9 14 5.6697 2.1830 -3.6583
10 1 5.8840 0.7312 -3.8857
11 1 5.8282 2.9132 -4.9417
12 1 6.6663 2.6828 -2.6774
13 6 2.3233 1.9882 1.1641
14 8 2.6446 3.1577 1.1722
15 6 2.2709 1.2121 2.4549
16 7 2.6894 2.0788 3.5646
17 6 1.6362 3.0441 3.9044
18 6 2.1588 4.0206 4.9605
19 6 2.5817 3.2384 6.2071
20 6 3.6440 2.2071 5.8169
21 6 3.0783 1.2832 4.7360
22 1 2.2052 0.7600 5.1259
23 6 4.1436 0.2632 4.3285
24 16 5.5996 1.1337 3.6858
25 7 6.5655 -0.0677 3.0809
26 8 5.2536 1.9114 2.5479
27 8 6.3581 1.6904 4.7507
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.4434 1.7367 -1.9854
34 1 2.0184 3.1683 -1.0979
35 1 3.3668 3.6244 -4.4947
36 1 1.2525 0.8649 2.6290
37 1 2.9411 0.3548 2.3908
38 1 1.3476 3.5965 3.0102
39 1 0.7698 2.5128 4.2984
40 1 3.0168 4.5623 4.5625
41 1 1.3721 4.7277 5.2234
42 1 2.9949 3.9254 6.9455
43 1 1.7153 2.7287 6.6285
44 1 4.5255 2.7202 5.4323
45 1 3.9182 1.6181 6.6921
46 1 4.4292 -0.3304 5.1968
47 1 3.7420 -0.3926 3.5560
48 1 7.1546 0.1145 2.3321
49 1 6.5423 -0.9535 3.4754
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365322880.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:09
Heat of formation + Delta-G solvation = -92.718027 kcal
Electronic energy + Delta-G solvation = -31559.010804 eV
Core-core repulsion = 27455.754325 eV
Total energy + Delta-G solvation = -4103.256479 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-39.91131 -38.27519 -36.76085 -35.59022 -35.09469 -33.76243 -33.14353 -32.80160
-32.54087 -29.98598 -28.39467 -27.57247 -26.17355 -23.53675 -22.93143 -22.38222
-21.65065 -20.07000 -19.23344 -18.21234 -17.40193 -17.25175 -16.84375 -16.24107
-15.99416 -15.86956 -15.17442 -15.06329 -14.91835 -14.52853 -14.32788 -14.10184
-13.89428 -13.58928 -13.27228 -13.01885 -12.69525 -12.61450 -12.46053 -12.21222
-12.13663 -11.91536 -11.72421 -11.66161 -11.57205 -11.47440 -11.26314 -11.08343
-10.84091 -10.76991 -10.69405 -10.60812 -10.48083 -10.45179 -10.33706 -10.31336
-10.00755 -9.49594 -8.77420 -8.31024 -8.14515 -7.46571 -5.92084 -3.95118
0.36066 3.01051 3.38955 3.43928 3.45086 3.50888 3.69224 3.82602
4.11993 4.15829 4.32862 4.56218 4.69392 4.78290 4.90086 4.97355
5.09163 5.14516 5.20790 5.30444 5.34289 5.36024 5.42406 5.48644
5.56800 5.62405 5.68876 5.77265 5.80349 5.83138 5.85769 5.95480
6.03661 6.05983 6.22806 6.28192 6.39091 6.50551 6.92283 7.04110
7.05769 7.24575 7.60148 7.72778 8.06204 8.38466 8.61268 9.06084
9.35636 9.69500 11.16027
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011004 B = 0.004444 C = 0.003762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2543.943188 B = 6299.335503 C = 7441.377797
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.107 3.893
3 N -0.606 5.606
4 C 0.250 3.750
5 C -0.519 4.519
6 H 0.058 0.942
7 C 0.060 3.940
8 N -0.898 5.898
9 Si 0.895 3.105
10 H -0.279 1.279
11 H -0.288 1.288
12 H -0.275 1.275
13 C 0.515 3.485
14 O -0.506 6.506
15 C 0.033 3.967
16 N -0.516 5.516
17 C 0.061 3.939
18 C -0.121 4.121
19 C -0.116 4.116
20 C -0.138 4.138
21 C 0.101 3.899
22 H 0.064 0.936
23 C -0.637 4.637
24 S 2.608 3.392
25 N -1.259 6.259
26 O -0.900 6.900
27 O -0.968 6.968
28 H 0.048 0.952
29 H 0.062 0.938
30 H 0.057 0.943
31 H 0.080 0.920
32 H 0.058 0.942
33 H 0.028 0.972
34 H 0.043 0.957
35 H 0.262 0.738
36 H 0.057 0.943
37 H 0.090 0.910
38 H 0.095 0.905
39 H 0.029 0.971
40 H 0.079 0.921
41 H 0.069 0.931
42 H 0.069 0.931
43 H 0.060 0.940
44 H 0.080 0.920
45 H 0.078 0.922
46 H 0.135 0.865
47 H 0.136 0.864
48 H 0.421 0.579
49 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.534 -10.984 19.730 22.723
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.017 4.017
3 N -0.340 5.340
4 C 0.131 3.869
5 C -0.558 4.558
6 H 0.076 0.924
7 C -0.141 4.141
8 N -0.538 5.538
9 Si 0.723 3.277
10 H -0.204 1.204
11 H -0.213 1.213
12 H -0.201 1.201
13 C 0.300 3.700
14 O -0.380 6.380
15 C -0.097 4.097
16 N -0.242 5.242
17 C -0.066 4.066
18 C -0.159 4.159
19 C -0.154 4.154
20 C -0.176 4.176
21 C -0.009 4.009
22 H 0.081 0.919
23 C -0.764 4.764
24 S 2.696 3.304
25 N -0.931 5.931
26 O -0.889 6.889
27 O -0.958 6.958
28 H 0.067 0.933
29 H 0.081 0.919
30 H 0.076 0.924
31 H 0.098 0.902
32 H 0.076 0.924
33 H 0.046 0.954
34 H 0.061 0.939
35 H 0.071 0.929
36 H 0.075 0.925
37 H 0.108 0.892
38 H 0.114 0.886
39 H 0.047 0.953
40 H 0.097 0.903
41 H 0.087 0.913
42 H 0.087 0.913
43 H 0.079 0.921
44 H 0.099 0.901
45 H 0.096 0.904
46 H 0.153 0.847
47 H 0.154 0.846
48 H 0.251 0.749
49 H 0.231 0.769
Dipole moment (debyes) X Y Z Total
from point charges -1.906 -8.851 19.464 21.467
hybrid contribution 0.162 -1.913 -0.270 1.939
sum -1.744 -10.765 19.194 22.076
Atomic orbital electron populations
1.22209 0.96996 1.01129 1.02313 1.21351 0.93415 0.84842 1.02126
1.48200 1.64689 1.13086 1.08010 1.19188 0.96454 0.93172 0.78105
1.21441 0.98357 1.30386 1.05586 0.92416 1.24915 0.97340 0.95086
0.96806 1.69928 1.35066 1.32677 1.16101 0.86606 0.85076 0.77988
0.78027 1.20428 1.21336 1.20063 1.19820 0.78291 0.87831 0.84080
1.90655 1.45121 1.16171 1.86034 1.22157 0.99772 0.95974 0.91845
1.61614 1.41967 1.16135 1.04446 1.22151 0.90598 0.93758 1.00068
1.21635 1.02107 0.97742 0.94413 1.21535 0.98060 0.97724 0.98050
1.22020 0.99962 0.97846 0.97758 1.21269 0.95973 0.91853 0.91823
0.91857 1.30747 1.20045 1.12413 1.13240 1.05250 0.75452 0.74123
0.75528 1.53500 1.61017 1.28237 1.50334 1.93819 1.82795 1.64934
1.47338 1.93588 1.68075 1.74965 1.59135 0.93332 0.91895 0.92421
0.90197 0.92362 0.95354 0.93898 0.92870 0.92479 0.89187 0.88637
0.95288 0.90273 0.91255 0.91275 0.92115 0.90106 0.90353 0.84690
0.84591 0.74933 0.76926
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16
2 C 0.11 1.71 6.05 -4.04 -0.02 1.69 16
3 N -0.61 -13.03 2.46 -175.06 -0.43 -13.46 16
4 C 0.25 6.69 5.22 -5.19 -0.03 6.66 16
5 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16
6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16
7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
8 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16
9 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16
10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16
13 C 0.51 11.03 7.39 -10.98 -0.08 10.95 16
14 O -0.51 -13.20 14.54 5.55 0.08 -13.12 16
15 C 0.03 0.51 3.15 -4.98 -0.02 0.50 16
16 N -0.52 -7.70 2.80 -228.12 -0.64 -8.34 16
17 C 0.06 0.86 5.11 -3.83 -0.02 0.84 16
18 C -0.12 -1.48 6.09 -26.65 -0.16 -1.65 16
19 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16
20 C -0.14 -1.53 4.96 -26.65 -0.13 -1.66 16
21 C 0.10 1.12 2.13 -67.72 -0.14 0.98 16
22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
23 C -0.64 -5.89 5.43 37.16 0.20 -5.69 16
24 S 2.61 35.32 5.10 -107.50 -0.55 34.77 16
25 N -1.26 -12.37 9.36 60.35 0.57 -11.80 16
26 O -0.90 -17.56 16.41 -57.54 -0.94 -18.50 16
27 O -0.97 -15.31 16.36 -57.54 -0.94 -16.25 16
28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16
32 H 0.06 0.74 6.25 -51.93 -0.32 0.42 16
33 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16
34 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16
35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
36 H 0.06 0.73 7.97 -51.93 -0.41 0.31 16
37 H 0.09 1.19 4.65 -51.93 -0.24 0.95 16
38 H 0.10 1.62 6.54 -51.93 -0.34 1.28 16
39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
44 H 0.08 1.09 5.79 -51.93 -0.30 0.79 16
45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
46 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16
47 H 0.14 1.03 5.93 -51.92 -0.31 0.73 16
48 H 0.42 4.21 8.96 -34.47 -0.31 3.90 16
49 H 0.41 2.39 8.96 -34.47 -0.31 2.08 16
LS Contribution 392.09 15.07 5.91 5.91
Total: -1.00 -40.11 392.09 -9.80 -49.91
By element:
Atomic # 1 Polarization: 12.31 SS G_CDS: -7.96 Total: 4.34 kcal
Atomic # 6 Polarization: -3.76 SS G_CDS: -0.60 Total: -4.37 kcal
Atomic # 7 Polarization: -60.44 SS G_CDS: 0.23 Total: -60.21 kcal
Atomic # 8 Polarization: -46.07 SS G_CDS: -1.80 Total: -47.87 kcal
Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal
Atomic # 16 Polarization: 35.32 SS G_CDS: -0.55 Total: 34.77 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -40.11 -9.80 -49.91 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365322880.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.804 kcal
(2) G-P(sol) polarization free energy of solvation -40.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.916 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.718 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds