Wall clock time and date at job start Wed Apr 1 2020 04:44:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46508 * 109.46963 * 2 1
4 4 C 1.46495 * 120.00038 * 274.18754 * 3 2 1
5 5 C 1.50706 * 109.46671 * 270.00011 * 4 3 2
6 6 H 1.07996 * 120.00417 * 0.02562 * 5 4 3
7 7 C 1.37879 * 119.99509 * 179.97438 * 5 4 3
8 8 N 1.31518 * 120.00158 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 119.99760 * 179.97438 * 7 5 4
10 10 H 1.48502 * 109.47001 * 60.00086 * 9 7 5
11 11 H 1.48504 * 109.47019 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47308 * 299.99831 * 9 7 5
13 13 C 1.34776 * 119.99824 * 94.18622 * 3 2 1
14 14 O 1.21284 * 119.99682 * 184.76226 * 13 3 2
15 15 C 1.50704 * 120.00065 * 5.03587 * 13 3 2
16 16 N 1.46895 * 109.46877 * 178.01281 * 15 13 3
17 17 C 1.46847 * 111.00105 * 74.52267 * 16 15 13
18 18 C 1.53037 * 109.52352 * 185.83636 * 17 16 15
19 19 C 1.53116 * 109.28218 * 300.82208 * 18 17 16
20 20 C 1.53120 * 109.16199 * 57.64997 * 19 18 17
21 21 C 1.46847 * 111.00134 * 198.73073 * 16 15 13
22 22 H 1.09004 * 109.46347 * 294.17763 * 21 16 15
23 23 C 1.53007 * 109.46240 * 54.14381 * 21 16 15
24 24 S 1.81401 * 109.46862 * 60.25481 * 23 21 16
25 25 N 1.65596 * 104.44948 * 188.12643 * 24 23 21
26 26 O 1.42106 * 110.54350 * 299.75130 * 24 23 21
27 27 O 1.42104 * 110.54197 * 76.50539 * 24 23 21
28 28 H 1.08999 * 109.47645 * 299.99939 * 1 2 3
29 29 H 1.08996 * 109.47019 * 60.00015 * 1 2 3
30 30 H 1.08995 * 109.47090 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.47202 * 240.00119 * 2 1 3
32 32 H 1.09000 * 109.47070 * 119.99482 * 2 1 3
33 33 H 1.08998 * 109.47123 * 29.99625 * 4 3 2
34 34 H 1.08993 * 109.47511 * 150.00023 * 4 3 2
35 35 H 0.97000 * 119.99834 * 179.97438 * 8 7 5
36 36 H 1.08995 * 109.47141 * 298.01411 * 15 13 3
37 37 H 1.09001 * 109.47117 * 58.01232 * 15 13 3
38 38 H 1.08997 * 109.46161 * 305.85250 * 17 16 15
39 39 H 1.09001 * 109.46553 * 65.83412 * 17 16 15
40 40 H 1.09001 * 109.50477 * 60.76169 * 18 17 16
41 41 H 1.09003 * 109.50576 * 180.83858 * 18 17 16
42 42 H 1.08994 * 109.52933 * 177.55872 * 19 18 17
43 43 H 1.08999 * 109.51987 * 297.68743 * 19 18 17
44 44 H 1.09006 * 109.50123 * 62.29265 * 20 19 18
45 45 H 1.08999 * 109.50631 * 182.40267 * 20 19 18
46 46 H 1.08993 * 109.47435 * 180.25654 * 23 21 16
47 47 H 1.09001 * 109.46884 * 300.26232 * 23 21 16
48 48 H 0.96998 * 119.99981 * 149.99975 * 25 24 23
49 49 H 0.97001 * 119.99890 * 330.00375 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1751 2.1028 -1.2653
5 6 3.5650 1.8778 -1.8028
6 1 4.2616 1.2590 -1.2568
7 6 3.9468 2.4612 -2.9923
8 7 3.0980 3.2136 -3.6580
9 14 5.6697 2.1830 -3.6583
10 1 5.8840 0.7312 -3.8857
11 1 5.8282 2.9132 -4.9417
12 1 6.6663 2.6828 -2.6774
13 6 2.3233 1.9882 1.1641
14 8 2.6446 3.1577 1.1722
15 6 2.2709 1.2121 2.4549
16 7 2.6894 2.0788 3.5646
17 6 1.6362 3.0441 3.9044
18 6 2.1588 4.0206 4.9605
19 6 2.5817 3.2384 6.2071
20 6 3.6440 2.2071 5.8169
21 6 3.0783 1.2832 4.7360
22 1 2.2052 0.7600 5.1259
23 6 4.1436 0.2632 4.3285
24 16 5.5996 1.1337 3.6858
25 7 6.5655 -0.0677 3.0809
26 8 5.2536 1.9114 2.5479
27 8 6.3581 1.6904 4.7507
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.4434 1.7367 -1.9854
34 1 2.0184 3.1683 -1.0979
35 1 3.3668 3.6244 -4.4947
36 1 1.2525 0.8649 2.6290
37 1 2.9411 0.3548 2.3908
38 1 1.3476 3.5965 3.0102
39 1 0.7698 2.5128 4.2984
40 1 3.0168 4.5623 4.5625
41 1 1.3721 4.7277 5.2234
42 1 2.9949 3.9254 6.9455
43 1 1.7153 2.7287 6.6285
44 1 4.5255 2.7202 5.4323
45 1 3.9182 1.6181 6.6921
46 1 4.4292 -0.3304 5.1968
47 1 3.7420 -0.3926 3.5560
48 1 7.1546 0.1145 2.3321
49 1 6.5423 -0.9535 3.4754
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001365322880.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:08
Heat of formation + Delta-G solvation = -126.722346 kcal
Electronic energy + Delta-G solvation = -31560.485342 eV
Core-core repulsion = 27455.754325 eV
Total energy + Delta-G solvation = -4104.731016 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-41.11057 -39.65759 -37.88791 -36.77534 -36.72970 -34.98042 -34.57008 -33.98551
-33.64426 -31.52614 -29.87152 -28.59258 -27.75780 -25.04018 -24.31155 -23.66230
-22.77461 -20.97167 -20.21180 -19.77249 -18.56016 -18.34186 -18.18448 -17.98702
-17.24434 -17.16106 -16.56698 -16.28519 -16.06114 -15.90517 -15.66786 -15.25183
-14.88850 -14.83661 -14.58309 -14.25768 -14.05582 -13.92782 -13.51420 -13.38269
-13.23989 -13.16496 -13.10145 -13.04572 -12.85993 -12.78653 -12.75125 -12.61430
-12.48016 -12.32327 -12.11165 -11.84657 -11.68358 -11.66555 -11.49859 -11.39492
-11.25928 -11.15244 -10.60375 -10.36975 -9.32386 -9.14314 -8.17665 -6.31309
-0.59385 1.34171 1.41126 1.47434 2.04795 2.12242 2.31913 2.42911
2.89878 2.92711 3.11026 3.39033 3.43739 3.74323 3.81313 3.94254
4.04747 4.15263 4.23285 4.26346 4.29677 4.34131 4.40152 4.48935
4.58931 4.63348 4.66543 4.80109 4.90265 4.91834 4.96276 5.03887
5.05279 5.10674 5.17282 5.26506 5.29061 5.31707 5.42316 5.45339
5.64912 5.92709 6.02205 6.10658 6.15235 6.39768 6.77681 6.98728
7.35131 7.75240 8.88752
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011004 B = 0.004444 C = 0.003762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2543.943188 B = 6299.335503 C = 7441.377797
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.098 3.902
3 N -0.613 5.613
4 C 0.267 3.733
5 C -0.535 4.535
6 H 0.052 0.948
7 C 0.005 3.995
8 N -0.931 5.931
9 Si 0.962 3.038
10 H -0.254 1.254
11 H -0.278 1.278
12 H -0.283 1.283
13 C 0.502 3.498
14 O -0.570 6.570
15 C 0.045 3.955
16 N -0.550 5.550
17 C 0.063 3.937
18 C -0.122 4.122
19 C -0.110 4.110
20 C -0.146 4.146
21 C 0.095 3.905
22 H 0.108 0.892
23 C -0.610 4.610
24 S 2.596 3.404
25 N -1.248 6.248
26 O -0.975 6.975
27 O -1.007 7.007
28 H 0.057 0.943
29 H 0.033 0.967
30 H 0.097 0.903
31 H 0.069 0.931
32 H 0.103 0.897
33 H 0.019 0.981
34 H -0.010 1.010
35 H 0.265 0.735
36 H 0.096 0.904
37 H 0.116 0.884
38 H 0.049 0.951
39 H 0.063 0.937
40 H 0.038 0.962
41 H 0.083 0.917
42 H 0.075 0.925
43 H 0.091 0.909
44 H 0.044 0.956
45 H 0.111 0.889
46 H 0.188 0.812
47 H 0.164 0.836
48 H 0.420 0.580
49 H 0.426 0.574
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.260 -15.464 22.632 27.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.025 4.025
3 N -0.347 5.347
4 C 0.145 3.855
5 C -0.573 4.573
6 H 0.070 0.930
7 C -0.193 4.193
8 N -0.571 5.571
9 Si 0.787 3.213
10 H -0.178 1.178
11 H -0.203 1.203
12 H -0.209 1.209
13 C 0.290 3.710
14 O -0.448 6.448
15 C -0.085 4.085
16 N -0.276 5.276
17 C -0.065 4.065
18 C -0.160 4.160
19 C -0.147 4.147
20 C -0.184 4.184
21 C -0.014 4.014
22 H 0.126 0.874
23 C -0.743 4.743
24 S 2.690 3.310
25 N -0.923 5.923
26 O -0.965 6.965
27 O -0.996 6.996
28 H 0.076 0.924
29 H 0.053 0.947
30 H 0.116 0.884
31 H 0.087 0.913
32 H 0.122 0.878
33 H 0.037 0.963
34 H 0.008 0.992
35 H 0.074 0.926
36 H 0.114 0.886
37 H 0.134 0.866
38 H 0.068 0.932
39 H 0.081 0.919
40 H 0.056 0.944
41 H 0.102 0.898
42 H 0.094 0.906
43 H 0.110 0.890
44 H 0.063 0.937
45 H 0.130 0.870
46 H 0.206 0.794
47 H 0.181 0.819
48 H 0.249 0.751
49 H 0.255 0.745
Dipole moment (debyes) X Y Z Total
from point charges -2.606 -13.386 22.376 26.204
hybrid contribution 0.338 -0.516 -1.117 1.276
sum -2.268 -13.902 21.260 25.502
Atomic orbital electron populations
1.22138 0.94825 1.03390 1.01427 1.21744 0.95195 0.81681 1.03835
1.48242 1.64936 1.15121 1.06370 1.18564 0.95324 0.90926 0.80660
1.21716 0.99262 1.30475 1.05890 0.92995 1.25847 1.01688 0.94651
0.97145 1.70057 1.37154 1.33412 1.16524 0.85553 0.79296 0.79285
0.77201 1.17821 1.20275 1.20939 1.21076 0.76444 0.87618 0.85903
1.90624 1.47701 1.19306 1.87174 1.22071 1.02633 0.95322 0.88458
1.61434 1.42781 1.17352 1.06046 1.22061 0.91799 0.94042 0.98549
1.21632 1.00975 0.97992 0.95403 1.21526 0.98981 0.97616 0.96588
1.22143 0.98866 0.98439 0.98931 1.21516 0.97709 0.91945 0.90222
0.87402 1.30554 1.15844 1.11871 1.16000 1.05088 0.76792 0.74769
0.74364 1.53103 1.60438 1.28664 1.50112 1.93757 1.84225 1.68229
1.50260 1.93540 1.69893 1.76814 1.59316 0.92359 0.94734 0.88427
0.91259 0.87842 0.96285 0.99230 0.92612 0.88622 0.86594 0.93220
0.91911 0.94352 0.89822 0.90610 0.89025 0.93711 0.87025 0.79415
0.81857 0.75080 0.74534
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16
2 C 0.10 2.94 6.05 86.38 0.52 3.47 16
3 N -0.61 -27.04 2.46 -826.15 -2.03 -29.07 16
4 C 0.27 15.24 5.22 85.64 0.45 15.68 16
5 C -0.53 -32.59 9.39 25.60 0.24 -32.35 16
6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16
7 C 0.00 0.30 5.46 84.65 0.46 0.76 16
8 N -0.93 -59.07 13.29 21.45 0.28 -58.78 16
9 Si 0.96 47.32 29.54 68.60 2.03 49.34 16
10 H -0.25 -11.43 7.11 99.48 0.71 -10.72 16
11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
12 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16
13 C 0.50 22.06 7.39 87.66 0.65 22.71 16
14 O -0.57 -32.13 14.54 -3.04 -0.04 -32.18 16
15 C 0.05 1.28 3.15 85.56 0.27 1.55 16
16 N -0.55 -15.47 2.80 -875.65 -2.46 -17.93 16
17 C 0.06 1.71 5.11 86.33 0.44 2.15 16
18 C -0.12 -3.00 6.09 30.65 0.19 -2.81 16
19 C -0.11 -1.90 6.00 30.67 0.18 -1.71 16
20 C -0.15 -2.77 4.96 30.65 0.15 -2.62 16
21 C 0.10 1.67 2.13 44.94 0.10 1.77 16
22 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16
23 C -0.61 -8.11 5.43 71.98 0.39 -7.72 16
24 S 2.60 68.07 5.10 -56.49 -0.29 67.78 16
25 N -1.25 -22.52 9.36 37.02 0.35 -22.17 16
26 O -0.98 -39.78 16.41 -127.65 -2.10 -41.87 16
27 O -1.01 -31.96 16.36 -127.65 -2.09 -34.04 16
28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
31 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16
32 H 0.10 2.17 6.25 -2.39 -0.01 2.15 16
33 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16
34 H -0.01 -0.70 7.36 -2.39 -0.02 -0.71 16
35 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16
36 H 0.10 1.95 7.97 -2.39 -0.02 1.93 16
37 H 0.12 2.57 4.65 -2.39 -0.01 2.56 16
38 H 0.05 1.79 6.54 -2.39 -0.02 1.78 16
39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16
41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.04 1.20 5.79 -2.38 -0.01 1.18 16
45 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
46 H 0.19 0.63 8.14 -2.39 -0.02 0.61 16
47 H 0.16 1.37 5.93 -2.39 -0.01 1.36 16
48 H 0.42 8.22 8.96 -96.75 -0.87 7.35 16
49 H 0.43 3.69 8.96 -96.75 -0.87 2.82 16
Total: -1.00 -100.38 392.09 -2.33 -102.71
By element:
Atomic # 1 Polarization: 19.27 SS G_CDS: -0.77 Total: 18.51 kcal
Atomic # 6 Polarization: -7.07 SS G_CDS: 4.78 Total: -2.30 kcal
Atomic # 7 Polarization: -124.10 SS G_CDS: -3.85 Total: -127.96 kcal
Atomic # 8 Polarization: -103.86 SS G_CDS: -4.23 Total: -108.09 kcal
Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal
Atomic # 16 Polarization: 68.07 SS G_CDS: -0.29 Total: 67.78 kcal
Total: -100.38 -2.33 -102.71 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365322880.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.008 kcal
(2) G-P(sol) polarization free energy of solvation -100.384 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.715 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.722 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds