Wall clock time and date at job start Wed Apr 1 2020 04:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46963 * 2 1 4 4 C 1.46495 * 120.00038 * 274.18754 * 3 2 1 5 5 C 1.50706 * 109.46671 * 270.00011 * 4 3 2 6 6 H 1.07996 * 120.00417 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99509 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00158 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99760 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47001 * 60.00086 * 9 7 5 11 11 H 1.48504 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47308 * 299.99831 * 9 7 5 13 13 C 1.34776 * 119.99824 * 94.18622 * 3 2 1 14 14 O 1.21284 * 119.99682 * 184.76226 * 13 3 2 15 15 C 1.50704 * 120.00065 * 5.03587 * 13 3 2 16 16 N 1.46895 * 109.46877 * 178.01281 * 15 13 3 17 17 C 1.46847 * 111.00105 * 74.52267 * 16 15 13 18 18 C 1.53037 * 109.52352 * 185.83636 * 17 16 15 19 19 C 1.53116 * 109.28218 * 300.82208 * 18 17 16 20 20 C 1.53120 * 109.16199 * 57.64997 * 19 18 17 21 21 C 1.46847 * 111.00134 * 198.73073 * 16 15 13 22 22 H 1.09004 * 109.46347 * 294.17763 * 21 16 15 23 23 C 1.53007 * 109.46240 * 54.14381 * 21 16 15 24 24 S 1.81401 * 109.46862 * 60.25481 * 23 21 16 25 25 N 1.65596 * 104.44948 * 188.12643 * 24 23 21 26 26 O 1.42106 * 110.54350 * 299.75130 * 24 23 21 27 27 O 1.42104 * 110.54197 * 76.50539 * 24 23 21 28 28 H 1.08999 * 109.47645 * 299.99939 * 1 2 3 29 29 H 1.08996 * 109.47019 * 60.00015 * 1 2 3 30 30 H 1.08995 * 109.47090 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47202 * 240.00119 * 2 1 3 32 32 H 1.09000 * 109.47070 * 119.99482 * 2 1 3 33 33 H 1.08998 * 109.47123 * 29.99625 * 4 3 2 34 34 H 1.08993 * 109.47511 * 150.00023 * 4 3 2 35 35 H 0.97000 * 119.99834 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47141 * 298.01411 * 15 13 3 37 37 H 1.09001 * 109.47117 * 58.01232 * 15 13 3 38 38 H 1.08997 * 109.46161 * 305.85250 * 17 16 15 39 39 H 1.09001 * 109.46553 * 65.83412 * 17 16 15 40 40 H 1.09001 * 109.50477 * 60.76169 * 18 17 16 41 41 H 1.09003 * 109.50576 * 180.83858 * 18 17 16 42 42 H 1.08994 * 109.52933 * 177.55872 * 19 18 17 43 43 H 1.08999 * 109.51987 * 297.68743 * 19 18 17 44 44 H 1.09006 * 109.50123 * 62.29265 * 20 19 18 45 45 H 1.08999 * 109.50631 * 182.40267 * 20 19 18 46 46 H 1.08993 * 109.47435 * 180.25654 * 23 21 16 47 47 H 1.09001 * 109.46884 * 300.26232 * 23 21 16 48 48 H 0.96998 * 119.99981 * 149.99975 * 25 24 23 49 49 H 0.97001 * 119.99890 * 330.00375 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1751 2.1028 -1.2653 5 6 3.5650 1.8778 -1.8028 6 1 4.2616 1.2590 -1.2568 7 6 3.9468 2.4612 -2.9923 8 7 3.0980 3.2136 -3.6580 9 14 5.6697 2.1830 -3.6583 10 1 5.8840 0.7312 -3.8857 11 1 5.8282 2.9132 -4.9417 12 1 6.6663 2.6828 -2.6774 13 6 2.3233 1.9882 1.1641 14 8 2.6446 3.1577 1.1722 15 6 2.2709 1.2121 2.4549 16 7 2.6894 2.0788 3.5646 17 6 1.6362 3.0441 3.9044 18 6 2.1588 4.0206 4.9605 19 6 2.5817 3.2384 6.2071 20 6 3.6440 2.2071 5.8169 21 6 3.0783 1.2832 4.7360 22 1 2.2052 0.7600 5.1259 23 6 4.1436 0.2632 4.3285 24 16 5.5996 1.1337 3.6858 25 7 6.5655 -0.0677 3.0809 26 8 5.2536 1.9114 2.5479 27 8 6.3581 1.6904 4.7507 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.4434 1.7367 -1.9854 34 1 2.0184 3.1683 -1.0979 35 1 3.3668 3.6244 -4.4947 36 1 1.2525 0.8649 2.6290 37 1 2.9411 0.3548 2.3908 38 1 1.3476 3.5965 3.0102 39 1 0.7698 2.5128 4.2984 40 1 3.0168 4.5623 4.5625 41 1 1.3721 4.7277 5.2234 42 1 2.9949 3.9254 6.9455 43 1 1.7153 2.7287 6.6285 44 1 4.5255 2.7202 5.4323 45 1 3.9182 1.6181 6.6921 46 1 4.4292 -0.3304 5.1968 47 1 3.7420 -0.3926 3.5560 48 1 7.1546 0.1145 2.3321 49 1 6.5423 -0.9535 3.4754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365322880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:08 Heat of formation + Delta-G solvation = -126.722346 kcal Electronic energy + Delta-G solvation = -31560.485342 eV Core-core repulsion = 27455.754325 eV Total energy + Delta-G solvation = -4104.731016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.11057 -39.65759 -37.88791 -36.77534 -36.72970 -34.98042 -34.57008 -33.98551 -33.64426 -31.52614 -29.87152 -28.59258 -27.75780 -25.04018 -24.31155 -23.66230 -22.77461 -20.97167 -20.21180 -19.77249 -18.56016 -18.34186 -18.18448 -17.98702 -17.24434 -17.16106 -16.56698 -16.28519 -16.06114 -15.90517 -15.66786 -15.25183 -14.88850 -14.83661 -14.58309 -14.25768 -14.05582 -13.92782 -13.51420 -13.38269 -13.23989 -13.16496 -13.10145 -13.04572 -12.85993 -12.78653 -12.75125 -12.61430 -12.48016 -12.32327 -12.11165 -11.84657 -11.68358 -11.66555 -11.49859 -11.39492 -11.25928 -11.15244 -10.60375 -10.36975 -9.32386 -9.14314 -8.17665 -6.31309 -0.59385 1.34171 1.41126 1.47434 2.04795 2.12242 2.31913 2.42911 2.89878 2.92711 3.11026 3.39033 3.43739 3.74323 3.81313 3.94254 4.04747 4.15263 4.23285 4.26346 4.29677 4.34131 4.40152 4.48935 4.58931 4.63348 4.66543 4.80109 4.90265 4.91834 4.96276 5.03887 5.05279 5.10674 5.17282 5.26506 5.29061 5.31707 5.42316 5.45339 5.64912 5.92709 6.02205 6.10658 6.15235 6.39768 6.77681 6.98728 7.35131 7.75240 8.88752 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.004444 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.943188 B = 6299.335503 C = 7441.377797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.613 5.613 4 C 0.267 3.733 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.254 1.254 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.502 3.498 14 O -0.570 6.570 15 C 0.045 3.955 16 N -0.550 5.550 17 C 0.063 3.937 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.146 4.146 21 C 0.095 3.905 22 H 0.108 0.892 23 C -0.610 4.610 24 S 2.596 3.404 25 N -1.248 6.248 26 O -0.975 6.975 27 O -1.007 7.007 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.019 0.981 34 H -0.010 1.010 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.111 0.889 46 H 0.188 0.812 47 H 0.164 0.836 48 H 0.420 0.580 49 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -15.464 22.632 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.347 5.347 4 C 0.145 3.855 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.178 1.178 11 H -0.203 1.203 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.448 6.448 15 C -0.085 4.085 16 N -0.276 5.276 17 C -0.065 4.065 18 C -0.160 4.160 19 C -0.147 4.147 20 C -0.184 4.184 21 C -0.014 4.014 22 H 0.126 0.874 23 C -0.743 4.743 24 S 2.690 3.310 25 N -0.923 5.923 26 O -0.965 6.965 27 O -0.996 6.996 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.037 0.963 34 H 0.008 0.992 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.130 0.870 46 H 0.206 0.794 47 H 0.181 0.819 48 H 0.249 0.751 49 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.606 -13.386 22.376 26.204 hybrid contribution 0.338 -0.516 -1.117 1.276 sum -2.268 -13.902 21.260 25.502 Atomic orbital electron populations 1.22138 0.94825 1.03390 1.01427 1.21744 0.95195 0.81681 1.03835 1.48242 1.64936 1.15121 1.06370 1.18564 0.95324 0.90926 0.80660 1.21716 0.99262 1.30475 1.05890 0.92995 1.25847 1.01688 0.94651 0.97145 1.70057 1.37154 1.33412 1.16524 0.85553 0.79296 0.79285 0.77201 1.17821 1.20275 1.20939 1.21076 0.76444 0.87618 0.85903 1.90624 1.47701 1.19306 1.87174 1.22071 1.02633 0.95322 0.88458 1.61434 1.42781 1.17352 1.06046 1.22061 0.91799 0.94042 0.98549 1.21632 1.00975 0.97992 0.95403 1.21526 0.98981 0.97616 0.96588 1.22143 0.98866 0.98439 0.98931 1.21516 0.97709 0.91945 0.90222 0.87402 1.30554 1.15844 1.11871 1.16000 1.05088 0.76792 0.74769 0.74364 1.53103 1.60438 1.28664 1.50112 1.93757 1.84225 1.68229 1.50260 1.93540 1.69893 1.76814 1.59316 0.92359 0.94734 0.88427 0.91259 0.87842 0.96285 0.99230 0.92612 0.88622 0.86594 0.93220 0.91911 0.94352 0.89822 0.90610 0.89025 0.93711 0.87025 0.79415 0.81857 0.75080 0.74534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.94 6.05 86.38 0.52 3.47 16 3 N -0.61 -27.04 2.46 -826.15 -2.03 -29.07 16 4 C 0.27 15.24 5.22 85.64 0.45 15.68 16 5 C -0.53 -32.59 9.39 25.60 0.24 -32.35 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.00 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -59.07 13.29 21.45 0.28 -58.78 16 9 Si 0.96 47.32 29.54 68.60 2.03 49.34 16 10 H -0.25 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 13 C 0.50 22.06 7.39 87.66 0.65 22.71 16 14 O -0.57 -32.13 14.54 -3.04 -0.04 -32.18 16 15 C 0.05 1.28 3.15 85.56 0.27 1.55 16 16 N -0.55 -15.47 2.80 -875.65 -2.46 -17.93 16 17 C 0.06 1.71 5.11 86.33 0.44 2.15 16 18 C -0.12 -3.00 6.09 30.65 0.19 -2.81 16 19 C -0.11 -1.90 6.00 30.67 0.18 -1.71 16 20 C -0.15 -2.77 4.96 30.65 0.15 -2.62 16 21 C 0.10 1.67 2.13 44.94 0.10 1.77 16 22 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 23 C -0.61 -8.11 5.43 71.98 0.39 -7.72 16 24 S 2.60 68.07 5.10 -56.49 -0.29 67.78 16 25 N -1.25 -22.52 9.36 37.02 0.35 -22.17 16 26 O -0.98 -39.78 16.41 -127.65 -2.10 -41.87 16 27 O -1.01 -31.96 16.36 -127.65 -2.09 -34.04 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 32 H 0.10 2.17 6.25 -2.39 -0.01 2.15 16 33 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 34 H -0.01 -0.70 7.36 -2.39 -0.02 -0.71 16 35 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.10 1.95 7.97 -2.39 -0.02 1.93 16 37 H 0.12 2.57 4.65 -2.39 -0.01 2.56 16 38 H 0.05 1.79 6.54 -2.39 -0.02 1.78 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.04 1.20 5.79 -2.38 -0.01 1.18 16 45 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.19 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.16 1.37 5.93 -2.39 -0.01 1.36 16 48 H 0.42 8.22 8.96 -96.75 -0.87 7.35 16 49 H 0.43 3.69 8.96 -96.75 -0.87 2.82 16 Total: -1.00 -100.38 392.09 -2.33 -102.71 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.77 Total: 18.51 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.78 Total: -2.30 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -3.85 Total: -127.96 kcal Atomic # 8 Polarization: -103.86 SS G_CDS: -4.23 Total: -108.09 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 16 Polarization: 68.07 SS G_CDS: -0.29 Total: 67.78 kcal Total: -100.38 -2.33 -102.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365322880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.008 kcal (2) G-P(sol) polarization free energy of solvation -100.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds