Wall clock time and date at job start Wed Apr 1 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47127 * 2 1 4 4 C 1.46501 * 120.00057 * 90.00153 * 3 2 1 5 5 C 1.50699 * 109.47353 * 270.00127 * 4 3 2 6 6 H 1.07996 * 119.99802 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99887 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00485 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99792 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47118 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46919 * 300.00100 * 9 7 5 12 12 H 1.48503 * 109.47439 * 59.99913 * 9 7 5 13 13 C 1.34778 * 120.00349 * 270.00440 * 3 2 1 14 14 O 1.21278 * 120.00136 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99829 * 359.97438 * 13 3 2 16 16 N 1.46890 * 109.47064 * 186.04073 * 15 13 3 17 17 C 1.47902 * 111.00189 * 176.64146 * 16 15 13 18 18 C 1.53987 * 107.06164 * 214.15548 * 17 16 15 19 19 C 1.54602 * 105.13937 * 1.22294 * 18 17 16 20 20 H 1.09002 * 110.72252 * 263.60054 * 19 18 17 21 21 C 1.52998 * 110.72387 * 140.31404 * 19 18 17 22 22 N 1.46503 * 109.47143 * 66.45173 * 21 19 18 23 23 S 1.65601 * 120.00071 * 164.99662 * 22 21 19 24 24 C 1.81400 * 104.44693 * 65.00354 * 23 22 21 25 25 O 1.42095 * 104.27741 * 181.07514 * 23 22 21 26 26 O 1.42105 * 104.27658 * 308.93442 * 23 22 21 27 27 C 1.48531 * 111.00187 * 59.24684 * 16 15 13 28 28 H 1.09003 * 109.46767 * 299.99447 * 1 2 3 29 29 H 1.08996 * 109.47274 * 59.99547 * 1 2 3 30 30 H 1.09002 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46767 * 240.00553 * 2 1 3 32 32 H 1.08996 * 109.47274 * 120.00453 * 2 1 3 33 33 H 1.09001 * 109.47218 * 149.99866 * 4 3 2 34 34 H 1.09008 * 109.47083 * 30.00302 * 4 3 2 35 35 H 0.97001 * 120.00132 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46971 * 306.04679 * 15 13 3 37 37 H 1.09003 * 109.46598 * 66.04134 * 15 13 3 38 38 H 1.09000 * 109.91331 * 333.51187 * 17 16 15 39 39 H 1.09004 * 109.91639 * 94.60148 * 17 16 15 40 40 H 1.09005 * 110.31148 * 120.13852 * 18 17 16 41 41 H 1.09005 * 110.31086 * 242.30656 * 18 17 16 42 42 H 1.09003 * 109.47274 * 186.45456 * 21 19 18 43 43 H 1.09003 * 109.47264 * 306.45803 * 21 19 18 44 44 H 0.96998 * 119.99977 * 345.00063 * 22 21 19 45 45 H 1.08998 * 109.47151 * 60.00411 * 24 23 22 46 46 H 1.09000 * 109.47119 * 180.02562 * 24 23 22 47 47 H 1.08998 * 109.46814 * 299.99817 * 24 23 22 48 48 H 1.09010 * 110.66482 * 278.15082 * 27 16 15 49 49 H 1.08998 * 110.67035 * 41.28263 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 1.0068 2.7822 1.7039 6 1 0.1157 2.7246 1.0963 7 6 0.9951 3.5047 2.8781 8 7 2.0800 3.5744 3.6182 9 14 -0.5618 4.3847 3.4178 10 1 -0.3141 5.0848 4.7038 11 1 -0.9546 5.3750 2.3832 12 1 -1.6541 3.3944 3.5950 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1671 15 6 1.9922 1.3061 -2.4723 16 7 2.4454 2.1513 -3.5849 17 6 2.2888 1.4529 -4.8792 18 6 3.4555 1.9012 -5.7786 19 6 4.2914 2.8650 -4.9052 20 1 4.0177 3.9012 -5.1040 21 6 5.7877 2.6447 -5.1359 22 7 6.1334 3.0349 -6.5051 23 16 7.7190 3.2595 -6.9268 24 6 8.4687 1.6161 -6.7601 25 8 7.6668 3.6475 -8.2927 26 8 8.2243 4.1411 -5.9334 27 6 3.8934 2.4595 -3.4638 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.0645 2.7985 1.1384 34 1 2.5507 1.3451 2.0284 35 1 2.0717 4.0825 4.4445 36 1 2.5408 0.3643 -2.4845 37 1 0.9258 1.1067 -2.5784 38 1 2.3307 0.3744 -4.7265 39 1 1.3376 1.7263 -5.3360 40 1 4.0567 1.0416 -6.0751 41 1 3.0767 2.4206 -6.6589 42 1 6.3571 3.2503 -4.4308 43 1 6.0273 1.5919 -4.9868 44 1 5.4335 3.1618 -7.1646 45 1 7.9650 0.9175 -7.4282 46 1 9.5257 1.6707 -7.0209 47 1 8.3661 1.2727 -5.7308 48 1 4.0540 3.2875 -2.7731 49 1 4.4490 1.5777 -3.1448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460741250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:47 Heat of formation + Delta-G solvation = -95.822300 kcal Electronic energy + Delta-G solvation = -29194.905800 eV Core-core repulsion = 25091.514710 eV Total energy + Delta-G solvation = -4103.391090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.83921 -38.43838 -37.42693 -36.28979 -35.74673 -35.17070 -32.80580 -31.92227 -30.00314 -29.90603 -29.43484 -27.94036 -26.19810 -24.71194 -22.77493 -22.60723 -21.20166 -20.48014 -19.69498 -18.34434 -17.94213 -17.00616 -16.75576 -16.57190 -16.45594 -15.75509 -15.64499 -15.20845 -14.93647 -14.60403 -14.25201 -14.09258 -13.76604 -13.65772 -13.54971 -13.27909 -13.21178 -12.89803 -12.71159 -12.43561 -12.33341 -12.31121 -12.21906 -12.07541 -11.97709 -11.51831 -11.47798 -11.33213 -11.18437 -11.07525 -10.96953 -10.87690 -10.77211 -10.69302 -10.48639 -10.04087 -9.83725 -9.57027 -8.87443 -8.41173 -8.28863 -7.65348 -6.02482 -4.06374 -0.10333 2.34751 3.32724 3.37753 3.38136 3.44086 3.45079 3.67621 3.81718 4.11431 4.28870 4.43534 4.46009 4.50291 4.54635 4.61433 4.92300 4.98657 5.06846 5.16661 5.21654 5.23362 5.28032 5.32726 5.43768 5.48631 5.54602 5.57177 5.62034 5.69836 5.76395 5.81663 5.89675 6.09179 6.11386 6.27769 6.30211 6.60453 6.73963 6.90195 6.91340 7.12201 7.44802 7.57238 7.94202 8.25686 8.42884 8.92798 9.12613 9.58440 11.05696 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.002178 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.665873 B =12851.883599 C =13629.078375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.278 1.278 13 C 0.505 3.495 14 O -0.523 6.523 15 C 0.029 3.971 16 N -0.497 5.497 17 C 0.035 3.965 18 C -0.127 4.127 19 C -0.099 4.099 20 H 0.096 0.904 21 C 0.122 3.878 22 N -1.118 6.118 23 S 2.615 3.385 24 C -0.674 4.674 25 O -0.962 6.962 26 O -0.954 6.954 27 C 0.042 3.958 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.418 0.582 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.110 0.890 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 -11.600 -21.363 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.291 3.709 14 O -0.400 6.400 15 C -0.102 4.102 16 N -0.221 5.221 17 C -0.093 4.093 18 C -0.165 4.165 19 C -0.119 4.119 20 H 0.114 0.886 21 C -0.005 4.005 22 N -0.878 5.878 23 S 2.707 3.293 24 C -0.824 4.824 25 O -0.953 6.953 26 O -0.944 6.944 27 C -0.086 4.086 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.253 0.747 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.128 0.872 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.054 -9.664 -21.249 24.694 hybrid contribution -0.934 -1.191 0.347 1.553 sum 7.120 -10.855 -20.902 24.605 Atomic orbital electron populations 1.22233 0.96317 1.00841 1.03456 1.21384 0.94612 0.83851 1.01458 1.48287 1.64118 1.13141 1.07750 1.19268 0.97522 0.92395 0.77948 1.21396 0.97489 1.31073 1.06096 0.92391 1.24930 0.96425 0.96281 0.96500 1.69918 1.27500 1.41739 1.14378 0.86593 0.83255 0.79934 0.77830 1.21245 1.20169 1.20324 1.20069 0.79136 0.86997 0.84704 1.90647 1.45359 1.17167 1.86778 1.22316 1.02387 0.94487 0.91054 1.64547 1.17475 1.39697 1.00341 1.22903 0.99368 0.96523 0.90553 1.22493 0.96539 0.99029 0.98451 1.22299 0.92392 1.01355 0.95901 0.88608 1.21371 0.97323 0.99757 0.82012 1.55534 1.25802 1.87415 1.19012 1.04691 0.73812 0.76919 0.73920 1.30536 1.14148 1.25848 1.11863 1.93618 1.85506 1.81323 1.34810 1.93643 1.79424 1.60293 1.60992 1.23385 0.87400 1.01786 0.96069 0.90499 0.93261 0.92885 0.92312 0.90740 0.93931 0.95186 0.92718 0.92743 0.88275 0.93905 0.90254 0.91285 0.90854 0.89495 0.91816 0.74722 0.85324 0.85382 0.85327 0.87162 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.16 0.38 -2.12 16 2 C 0.11 1.69 6.00 -4.04 -0.02 1.67 16 3 N -0.60 -12.17 2.46 -175.05 -0.43 -12.60 16 4 C 0.25 6.32 5.20 -5.19 -0.03 6.29 16 5 C -0.52 -14.49 8.92 -34.44 -0.31 -14.80 16 6 H 0.06 1.61 7.42 -52.49 -0.39 1.22 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.51 10.06 7.31 -10.98 -0.08 9.98 16 14 O -0.52 -12.67 13.87 5.56 0.08 -12.59 16 15 C 0.03 0.42 4.03 -4.98 -0.02 0.40 16 16 N -0.50 -6.83 5.11 -231.90 -1.19 -8.02 16 17 C 0.03 0.34 6.70 -2.76 -0.02 0.32 16 18 C -0.13 -0.97 6.01 -25.37 -0.15 -1.12 16 19 C -0.10 -0.93 3.20 -88.76 -0.28 -1.22 16 20 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 21 C 0.12 0.91 5.46 -4.04 -0.02 0.89 16 22 N -1.12 -7.24 5.80 -10.61 -0.06 -7.30 16 23 S 2.62 19.13 6.10 -107.50 -0.66 18.47 16 24 C -0.67 -2.50 10.89 101.05 1.10 -1.40 16 25 O -0.96 -10.21 18.08 -57.54 -1.04 -11.25 16 26 O -0.95 -11.17 17.50 -57.54 -1.01 -12.17 16 27 C 0.04 0.54 5.03 -1.90 -0.01 0.53 16 28 H 0.08 1.37 7.26 -51.93 -0.38 1.00 16 29 H 0.05 0.71 7.41 -51.93 -0.38 0.32 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.70 6.28 -51.93 -0.33 0.37 16 32 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.03 0.78 7.89 -51.92 -0.41 0.37 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.05 0.65 6.92 -51.93 -0.36 0.29 16 37 H 0.10 1.33 7.41 -51.93 -0.38 0.94 16 38 H 0.04 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.41 7.80 -51.93 -0.41 0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.74 7.69 -51.93 -0.40 0.34 16 43 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 44 H 0.42 2.26 8.25 -34.47 -0.28 1.97 16 45 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 46 H 0.13 0.36 8.14 -51.92 -0.42 -0.07 16 47 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 48 H 0.11 1.83 6.43 -51.92 -0.33 1.50 16 49 H 0.04 0.48 7.92 -51.93 -0.41 0.07 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -38.29 402.54 -10.25 -48.55 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.17 Total: -1.26 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.44 Total: 1.04 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.94 Total: -53.68 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.97 Total: -36.02 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 19.13 SS G_CDS: -0.66 Total: 18.47 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.29 -10.25 -48.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460741250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.276 kcal (2) G-P(sol) polarization free energy of solvation -38.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds