Wall clock time and date at job start Wed Apr 1 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81396 * 109.47336 * 2 1 4 4 O 1.42097 * 110.54417 * 291.62389 * 3 2 1 5 5 O 1.42101 * 110.54326 * 68.37977 * 3 2 1 6 6 N 1.65603 * 104.44686 * 180.02562 * 3 2 1 7 7 C 1.46502 * 119.99869 * 65.00569 * 6 3 2 8 8 C 1.50701 * 109.46945 * 164.99720 * 7 6 3 9 9 O 1.21279 * 120.00472 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.63001 * 354.30956 * 10 8 7 12 12 C 1.53192 * 108.77292 * 126.36565 * 11 10 8 13 13 C 1.53038 * 109.31296 * 54.63574 * 12 11 10 14 14 C 1.53041 * 109.53866 * 298.63352 * 13 12 11 15 15 C 1.46928 * 120.62831 * 174.02502 * 10 8 7 16 16 H 1.09008 * 109.58137 * 113.84709 * 15 10 8 17 17 C 1.53000 * 109.58902 * 353.42539 * 15 10 8 18 18 H 1.09001 * 109.47092 * 58.84252 * 17 15 10 19 19 C 1.52997 * 109.47160 * 178.84650 * 17 15 10 20 20 N 1.46497 * 109.46971 * 298.84711 * 17 15 10 21 21 C 1.36937 * 120.00127 * 155.00013 * 20 17 15 22 22 H 1.07999 * 120.00079 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00228 * 180.02562 * 21 20 17 24 24 N 1.31623 * 119.99960 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00381 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47080 * 59.99251 * 25 23 21 27 27 H 1.48499 * 109.47476 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46638 * 299.99579 * 25 23 21 29 29 H 1.09001 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46796 * 300.00216 * 1 2 3 31 31 H 1.09007 * 109.47194 * 59.99389 * 1 2 3 32 32 H 1.09002 * 109.46796 * 239.99784 * 2 1 3 33 33 H 1.08998 * 109.47157 * 120.00439 * 2 1 3 34 34 H 0.96997 * 119.99890 * 244.99682 * 6 3 2 35 35 H 1.09003 * 109.46768 * 284.99568 * 7 6 3 36 36 H 1.08994 * 109.47686 * 44.99748 * 7 6 3 37 37 H 1.08994 * 109.58802 * 246.15064 * 11 10 8 38 38 H 1.08993 * 109.58811 * 6.58123 * 11 10 8 39 39 H 1.08999 * 109.49696 * 174.58532 * 12 11 10 40 40 H 1.08997 * 109.50008 * 294.68359 * 12 11 10 41 41 H 1.09004 * 109.46417 * 58.65422 * 13 12 11 42 42 H 1.08998 * 109.46165 * 178.61021 * 13 12 11 43 43 H 1.09001 * 109.49875 * 181.31740 * 14 13 12 44 44 H 1.09006 * 109.49603 * 301.41294 * 14 13 12 45 45 H 1.09005 * 109.47058 * 65.98012 * 19 17 15 46 46 H 1.09003 * 109.47047 * 185.97387 * 19 17 15 47 47 H 1.08997 * 109.46999 * 305.97441 * 19 17 15 48 48 H 0.97002 * 119.99868 * 335.00411 * 20 17 15 49 49 H 0.97002 * 120.00034 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 -1.2370 5 8 1.8387 2.3438 1.2370 6 7 3.7844 1.5651 -0.0007 7 6 4.4666 0.9671 -1.1510 8 6 5.9393 1.2787 -1.0794 9 8 6.3760 1.9360 -0.1585 10 7 6.7711 0.8269 -2.0388 11 6 6.2809 -0.0728 -3.0918 12 6 6.6376 0.5249 -4.4564 13 6 8.1426 0.7965 -4.5122 14 6 8.5207 1.8084 -3.4281 15 6 8.1840 1.2298 -2.0550 16 1 8.8138 0.3610 -1.8632 17 6 8.4273 2.2907 -0.9798 18 1 8.1595 1.8866 -0.0035 19 6 9.9050 2.6872 -0.9797 20 7 7.6052 3.4698 -1.2624 21 6 7.2437 4.3122 -0.2451 22 1 7.5643 4.1071 0.7656 23 6 6.4643 5.4293 -0.5128 24 7 6.0731 5.6790 -1.7445 25 14 5.9717 6.5789 0.8747 26 1 7.1915 7.1368 1.5119 27 1 5.1471 7.6873 0.3301 28 1 5.1853 5.8266 1.8851 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.2989 1.8762 0.7604 35 1 4.3227 -0.1133 -1.1373 36 1 4.0529 1.3770 -2.0723 37 1 6.7523 -1.0498 -2.9864 38 1 5.1989 -0.1760 -3.0097 39 1 6.3653 -0.1779 -5.2438 40 1 6.0939 1.4590 -4.5979 41 1 8.6860 -0.1337 -4.3461 42 1 8.4030 1.1989 -5.4912 43 1 9.5887 2.0190 -3.4835 44 1 7.9592 2.7304 -3.5792 45 1 10.1468 3.1879 -1.9173 46 1 10.1000 3.3625 -0.1465 47 1 10.5209 1.7940 -0.8753 48 1 7.3169 3.6538 -2.1701 49 1 5.5288 6.4598 -1.9317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479822022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:31 Heat of formation + Delta-G solvation = -57.936101 kcal Electronic energy + Delta-G solvation = -31600.257099 eV Core-core repulsion = 27498.508878 eV Total energy + Delta-G solvation = -4101.748221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.22205 -37.21663 -36.92232 -35.79345 -35.43226 -34.10752 -33.33501 -32.51124 -32.12527 -29.65883 -28.00078 -27.22187 -24.48263 -24.23112 -23.92504 -22.96022 -20.79875 -20.01207 -19.25026 -18.60876 -17.62499 -16.96965 -16.68014 -16.26013 -15.83175 -15.57432 -15.10005 -14.87632 -14.50274 -14.20584 -14.10244 -13.94429 -13.84561 -13.47828 -13.40783 -12.90636 -12.73538 -12.68884 -12.48241 -12.25837 -12.08724 -11.94387 -11.85722 -11.79889 -11.77140 -11.61919 -11.39383 -11.10524 -10.87257 -10.66079 -10.63044 -10.59493 -10.48563 -10.38196 -10.07702 -9.75727 -9.37877 -9.32102 -8.69805 -8.24351 -7.99722 -6.56585 -5.46362 -2.68967 0.29625 2.78524 3.24819 3.46993 3.63197 3.68524 3.70194 3.90070 4.15893 4.42665 4.69471 4.74106 4.85720 4.87148 4.94567 5.01923 5.10758 5.16261 5.33653 5.34653 5.43124 5.45863 5.48296 5.55373 5.64358 5.68627 5.76732 5.82597 5.83658 5.91959 6.02466 6.09515 6.16652 6.26474 6.31497 6.44763 6.51871 6.60665 6.86455 7.01713 7.08814 7.25782 7.39934 7.94738 8.03386 8.72040 8.91525 9.83949 10.39885 10.75831 11.77614 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.005494 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.324800 B = 5095.070959 C = 7331.501196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.638 4.638 3 S 2.613 3.387 4 O -0.949 6.949 5 O -0.954 6.954 6 N -1.099 6.099 7 C 0.100 3.900 8 C 0.502 3.498 9 O -0.447 6.447 10 N -0.612 5.612 11 C 0.110 3.890 12 C -0.138 4.138 13 C -0.116 4.116 14 C -0.134 4.134 15 C 0.148 3.852 16 H 0.062 0.938 17 C 0.167 3.833 18 H 0.084 0.916 19 C -0.169 4.169 20 N -0.707 5.707 21 C -0.184 4.184 22 H 0.064 0.936 23 C -0.025 4.025 24 N -0.944 5.944 25 Si 0.893 3.107 26 H -0.292 1.292 27 H -0.295 1.295 28 H -0.288 1.288 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.429 0.571 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.031 0.969 48 H 0.378 0.622 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 -19.950 -3.812 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.767 4.767 3 S 2.703 3.297 4 O -0.939 6.939 5 O -0.944 6.944 6 N -0.862 5.862 7 C -0.030 4.030 8 C 0.286 3.714 9 O -0.315 6.315 10 N -0.350 5.350 11 C -0.013 4.013 12 C -0.176 4.176 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.045 3.955 16 H 0.079 0.921 17 C 0.057 3.943 18 H 0.101 0.899 19 C -0.230 4.230 20 N -0.349 5.349 21 C -0.316 4.316 22 H 0.082 0.918 23 C -0.219 4.219 24 N -0.595 5.595 25 Si 0.726 3.274 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.215 1.215 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.269 0.731 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.213 0.787 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.175 -18.739 -3.237 19.470 hybrid contribution -0.045 0.153 0.441 0.469 sum -4.220 -18.586 -2.796 19.263 Atomic orbital electron populations 1.21491 0.90638 1.04782 1.03584 1.30590 1.07199 1.27471 1.11424 1.05002 0.73136 0.76977 0.74605 1.93621 1.83411 1.71387 1.45462 1.93612 1.83095 1.72554 1.45143 1.55228 1.25297 1.77770 1.27935 1.21065 0.94098 0.97369 0.90489 1.20006 0.87107 0.80397 0.83917 1.90895 1.74575 1.33201 1.32843 1.47812 1.10010 1.49431 1.27741 1.21625 0.99296 0.92786 0.87621 1.21936 0.97335 1.01895 0.96456 1.21494 0.95498 0.99236 0.99153 1.21928 1.01776 0.99558 0.93962 1.21483 0.80241 0.97200 0.96608 0.92054 1.20704 0.89169 0.87601 0.96810 0.89881 1.22595 0.99375 0.99452 1.01550 1.42389 1.59853 1.24778 1.07840 1.18985 1.23280 1.00270 0.89034 0.91792 1.24559 1.02029 0.99376 0.95892 1.69608 1.42762 1.29633 1.17486 0.86452 0.77948 0.80965 0.82068 1.21896 1.22146 1.21472 0.90213 0.90959 0.90897 0.85233 0.84976 0.73144 0.90376 0.88095 0.91888 0.90473 0.91393 0.90923 0.92451 0.92141 0.91066 0.90245 0.93583 0.92961 0.95003 0.78719 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.92 37.16 0.37 -0.80 16 2 C -0.64 -5.44 6.79 37.16 0.25 -5.19 16 3 S 2.61 38.02 5.46 -107.50 -0.59 37.43 16 4 O -0.95 -17.28 17.49 -57.54 -1.01 -18.29 16 5 O -0.95 -17.35 18.08 -57.54 -1.04 -18.39 16 6 N -1.10 -17.03 5.82 -11.65 -0.07 -17.10 16 7 C 0.10 1.39 4.97 -5.19 -0.03 1.37 16 8 C 0.50 8.73 7.16 -10.98 -0.08 8.65 16 9 O -0.45 -9.63 8.84 5.56 0.05 -9.58 16 10 N -0.61 -9.03 2.97 -165.48 -0.49 -9.52 16 11 C 0.11 1.16 6.35 -3.71 -0.02 1.13 16 12 C -0.14 -1.47 6.08 -26.61 -0.16 -1.64 16 13 C -0.12 -1.31 5.89 -26.69 -0.16 -1.47 16 14 C -0.13 -1.97 4.78 -26.84 -0.13 -2.10 16 15 C 0.15 2.32 2.74 -67.82 -0.19 2.13 16 16 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 17 C 0.17 3.31 1.89 -67.93 -0.13 3.18 16 18 H 0.08 1.81 5.94 -52.02 -0.31 1.50 16 19 C -0.17 -3.07 9.01 37.16 0.33 -2.74 16 20 N -0.71 -17.41 3.42 -53.43 -0.18 -17.59 16 21 C -0.18 -5.23 8.06 -15.06 -0.12 -5.35 16 22 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 24 N -0.94 -29.78 13.06 55.49 0.72 -29.05 16 25 Si 0.89 24.42 29.55 -169.99 -5.02 19.39 16 26 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 27 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 28 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.13 0.80 8.14 -51.92 -0.42 0.37 16 33 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.43 7.42 7.67 -34.47 -0.26 7.16 16 35 H 0.08 0.68 7.71 -51.93 -0.40 0.28 16 36 H 0.10 1.43 7.47 -51.93 -0.39 1.04 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.00 6.92 -51.93 -0.36 0.65 16 44 H 0.08 1.46 6.24 -51.93 -0.32 1.14 16 45 H 0.05 0.84 6.93 -51.93 -0.36 0.48 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.38 9.99 5.89 -40.82 -0.24 9.75 16 49 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -38.58 387.83 -9.93 -48.51 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.00 Total: 12.00 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.15 Total: -3.66 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -0.02 Total: -73.26 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -2.00 Total: -46.26 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.02 Total: 19.39 kcal Atomic # 16 Polarization: 38.02 SS G_CDS: -0.59 Total: 37.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.58 -9.93 -48.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479822022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.427 kcal (2) G-P(sol) polarization free energy of solvation -38.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds