Wall clock time and date at job start Wed Apr 1 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81396 * 109.47336 * 2 1 4 4 O 1.42097 * 110.54417 * 291.62389 * 3 2 1 5 5 O 1.42101 * 110.54326 * 68.37977 * 3 2 1 6 6 N 1.65603 * 104.44686 * 180.02562 * 3 2 1 7 7 C 1.46502 * 119.99869 * 65.00569 * 6 3 2 8 8 C 1.50701 * 109.46945 * 164.99720 * 7 6 3 9 9 O 1.21279 * 120.00472 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.63001 * 354.30956 * 10 8 7 12 12 C 1.53192 * 108.77292 * 126.36565 * 11 10 8 13 13 C 1.53038 * 109.31296 * 54.63574 * 12 11 10 14 14 C 1.53041 * 109.53866 * 298.63352 * 13 12 11 15 15 C 1.46928 * 120.62831 * 174.02502 * 10 8 7 16 16 H 1.09008 * 109.58137 * 113.84709 * 15 10 8 17 17 C 1.53000 * 109.58902 * 353.42539 * 15 10 8 18 18 H 1.09001 * 109.47092 * 58.84252 * 17 15 10 19 19 C 1.52997 * 109.47160 * 178.84650 * 17 15 10 20 20 N 1.46497 * 109.46971 * 298.84711 * 17 15 10 21 21 C 1.36937 * 120.00127 * 155.00013 * 20 17 15 22 22 H 1.07999 * 120.00079 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00228 * 180.02562 * 21 20 17 24 24 N 1.31623 * 119.99960 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00381 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47080 * 59.99251 * 25 23 21 27 27 H 1.48499 * 109.47476 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46638 * 299.99579 * 25 23 21 29 29 H 1.09001 * 109.47511 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46796 * 300.00216 * 1 2 3 31 31 H 1.09007 * 109.47194 * 59.99389 * 1 2 3 32 32 H 1.09002 * 109.46796 * 239.99784 * 2 1 3 33 33 H 1.08998 * 109.47157 * 120.00439 * 2 1 3 34 34 H 0.96997 * 119.99890 * 244.99682 * 6 3 2 35 35 H 1.09003 * 109.46768 * 284.99568 * 7 6 3 36 36 H 1.08994 * 109.47686 * 44.99748 * 7 6 3 37 37 H 1.08994 * 109.58802 * 246.15064 * 11 10 8 38 38 H 1.08993 * 109.58811 * 6.58123 * 11 10 8 39 39 H 1.08999 * 109.49696 * 174.58532 * 12 11 10 40 40 H 1.08997 * 109.50008 * 294.68359 * 12 11 10 41 41 H 1.09004 * 109.46417 * 58.65422 * 13 12 11 42 42 H 1.08998 * 109.46165 * 178.61021 * 13 12 11 43 43 H 1.09001 * 109.49875 * 181.31740 * 14 13 12 44 44 H 1.09006 * 109.49603 * 301.41294 * 14 13 12 45 45 H 1.09005 * 109.47058 * 65.98012 * 19 17 15 46 46 H 1.09003 * 109.47047 * 185.97387 * 19 17 15 47 47 H 1.08997 * 109.46999 * 305.97441 * 19 17 15 48 48 H 0.97002 * 119.99868 * 335.00411 * 20 17 15 49 49 H 0.97002 * 120.00034 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 -1.2370 5 8 1.8387 2.3438 1.2370 6 7 3.7844 1.5651 -0.0007 7 6 4.4666 0.9671 -1.1510 8 6 5.9393 1.2787 -1.0794 9 8 6.3760 1.9360 -0.1585 10 7 6.7711 0.8269 -2.0388 11 6 6.2809 -0.0728 -3.0918 12 6 6.6376 0.5249 -4.4564 13 6 8.1426 0.7965 -4.5122 14 6 8.5207 1.8084 -3.4281 15 6 8.1840 1.2298 -2.0550 16 1 8.8138 0.3610 -1.8632 17 6 8.4273 2.2907 -0.9798 18 1 8.1595 1.8866 -0.0035 19 6 9.9050 2.6872 -0.9797 20 7 7.6052 3.4698 -1.2624 21 6 7.2437 4.3122 -0.2451 22 1 7.5643 4.1071 0.7656 23 6 6.4643 5.4293 -0.5128 24 7 6.0731 5.6790 -1.7445 25 14 5.9717 6.5789 0.8747 26 1 7.1915 7.1368 1.5119 27 1 5.1471 7.6873 0.3301 28 1 5.1853 5.8266 1.8851 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.2989 1.8762 0.7604 35 1 4.3227 -0.1133 -1.1373 36 1 4.0529 1.3770 -2.0723 37 1 6.7523 -1.0498 -2.9864 38 1 5.1989 -0.1760 -3.0097 39 1 6.3653 -0.1779 -5.2438 40 1 6.0939 1.4590 -4.5979 41 1 8.6860 -0.1337 -4.3461 42 1 8.4030 1.1989 -5.4912 43 1 9.5887 2.0190 -3.4835 44 1 7.9592 2.7304 -3.5792 45 1 10.1468 3.1879 -1.9173 46 1 10.1000 3.3625 -0.1465 47 1 10.5209 1.7940 -0.8753 48 1 7.3169 3.6538 -2.1701 49 1 5.5288 6.4598 -1.9317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479822022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:30 Heat of formation + Delta-G solvation = -89.766644 kcal Electronic energy + Delta-G solvation = -31601.637375 eV Core-core repulsion = 27498.508878 eV Total energy + Delta-G solvation = -4103.128497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.47724 -38.43871 -38.17389 -37.04435 -36.93908 -35.41043 -34.07337 -34.03370 -33.59681 -31.25671 -29.64022 -28.36290 -25.90163 -25.44712 -24.95045 -24.44702 -21.88585 -21.43161 -20.35634 -19.82879 -19.08392 -18.74803 -17.81338 -17.42693 -17.07132 -16.72023 -16.36504 -16.27498 -15.78796 -15.67956 -15.48069 -15.12050 -14.95088 -14.78673 -14.29569 -14.13010 -14.04346 -13.91917 -13.71136 -13.47653 -13.36767 -13.24690 -13.13765 -13.05239 -13.01383 -12.94145 -12.79655 -12.63019 -12.38964 -12.27183 -12.19705 -11.91676 -11.66564 -11.57605 -11.52832 -11.32953 -11.18949 -10.81648 -10.45400 -9.64615 -9.30418 -8.62016 -7.78888 -4.95959 -0.75708 1.37764 1.43265 1.45858 1.68103 1.99117 2.34094 2.63727 2.88405 3.22398 3.56114 3.58997 3.71966 3.92250 3.97217 4.01376 4.11578 4.15158 4.24178 4.33279 4.40015 4.43185 4.47396 4.51164 4.63414 4.72330 4.76383 4.81673 4.84076 4.89193 4.93774 5.00945 5.08611 5.12517 5.14119 5.21058 5.32206 5.37698 5.49937 5.60890 5.63923 5.70146 5.95920 6.00461 6.45080 6.76672 7.50886 7.65832 8.32836 8.54772 9.45703 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.005494 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.324800 B = 5095.070959 C = 7331.501196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.589 4.589 3 S 2.594 3.406 4 O -1.002 7.002 5 O -1.007 7.007 6 N -1.112 6.112 7 C 0.097 3.903 8 C 0.489 3.511 9 O -0.505 6.505 10 N -0.611 5.611 11 C 0.102 3.898 12 C -0.137 4.137 13 C -0.110 4.110 14 C -0.129 4.129 15 C 0.152 3.848 16 H 0.096 0.904 17 C 0.160 3.840 18 H 0.065 0.935 19 C -0.160 4.160 20 N -0.707 5.707 21 C -0.152 4.152 22 H 0.055 0.945 23 C -0.090 4.090 24 N -0.977 5.977 25 Si 0.937 3.063 26 H -0.280 1.280 27 H -0.303 1.303 28 H -0.294 1.294 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.418 0.582 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.041 0.959 46 H 0.026 0.974 47 H 0.071 0.929 48 H 0.367 0.633 49 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 -25.109 -4.836 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.724 4.724 3 S 2.692 3.308 4 O -0.992 6.992 5 O -0.997 6.997 6 N -0.873 5.873 7 C -0.033 4.033 8 C 0.274 3.726 9 O -0.379 6.379 10 N -0.347 5.347 11 C -0.020 4.020 12 C -0.175 4.175 13 C -0.148 4.148 14 C -0.167 4.167 15 C 0.049 3.951 16 H 0.113 0.887 17 C 0.052 3.948 18 H 0.083 0.917 19 C -0.220 4.220 20 N -0.347 5.347 21 C -0.286 4.286 22 H 0.073 0.927 23 C -0.280 4.280 24 N -0.632 5.632 25 Si 0.770 3.230 26 H -0.207 1.207 27 H -0.230 1.230 28 H -0.222 1.222 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.181 0.819 34 H 0.254 0.746 35 H 0.161 0.839 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.090 0.910 48 H 0.201 0.799 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.861 -23.898 -4.290 24.586 hybrid contribution -0.092 1.531 0.752 1.708 sum -3.953 -22.368 -3.538 22.988 Atomic orbital electron populations 1.21739 0.89865 1.06977 1.03518 1.30204 1.07449 1.19753 1.15015 1.05333 0.72754 0.80054 0.72657 1.93548 1.83824 1.75088 1.46781 1.93534 1.83567 1.76022 1.46610 1.55237 1.25517 1.78656 1.27857 1.21344 0.91345 1.00924 0.89638 1.20716 0.88740 0.79598 0.83541 1.90859 1.75796 1.35983 1.35217 1.47954 1.09396 1.49328 1.28017 1.22048 1.01147 0.93076 0.85708 1.21946 0.96427 1.01241 0.97902 1.21478 0.96293 0.99202 0.97782 1.21850 1.01309 0.98647 0.94942 1.21382 0.81721 0.96792 0.95252 0.88670 1.20851 0.88980 0.87078 0.97874 0.91684 1.22433 0.98735 1.00600 1.00231 1.42472 1.60133 1.25761 1.06301 1.19131 1.20500 0.99564 0.89396 0.92690 1.25064 1.04056 1.01499 0.97377 1.69742 1.44686 1.29992 1.18793 0.85693 0.77751 0.79413 0.80108 1.20669 1.22994 1.22204 0.86561 0.91458 0.91041 0.81238 0.81870 0.74607 0.83910 0.88862 0.88172 0.88265 0.87851 0.94379 0.89516 0.91731 0.90605 0.94962 0.93965 0.95493 0.91022 0.79929 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.92 71.98 0.71 -1.29 16 2 C -0.59 -7.58 6.79 71.98 0.49 -7.10 16 3 S 2.59 76.14 5.46 -56.49 -0.31 75.83 16 4 O -1.00 -38.00 17.49 -127.65 -2.23 -40.23 16 5 O -1.01 -38.59 18.08 -127.65 -2.31 -40.90 16 6 N -1.11 -34.80 5.82 -190.79 -1.11 -35.91 16 7 C 0.10 2.54 4.97 85.63 0.43 2.96 16 8 C 0.49 16.70 7.16 87.66 0.63 17.32 16 9 O -0.51 -22.42 8.84 -3.03 -0.03 -22.45 16 10 N -0.61 -16.68 2.97 -795.84 -2.36 -19.04 16 11 C 0.10 1.67 6.35 86.36 0.55 2.22 16 12 C -0.14 -2.46 6.08 30.67 0.19 -2.28 16 13 C -0.11 -2.11 5.89 30.62 0.18 -1.93 16 14 C -0.13 -3.62 4.78 30.53 0.15 -3.48 16 15 C 0.15 4.45 2.74 44.83 0.12 4.58 16 16 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 17 C 0.16 6.37 1.89 44.99 0.08 6.45 16 18 H 0.07 2.88 5.94 -3.90 -0.02 2.86 16 19 C -0.16 -5.71 9.01 71.98 0.65 -5.06 16 20 N -0.71 -36.15 3.42 -322.95 -1.10 -37.26 16 21 C -0.15 -9.05 8.06 84.03 0.68 -8.37 16 22 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 23 C -0.09 -5.69 5.50 84.86 0.47 -5.23 16 24 N -0.98 -64.95 13.06 21.65 0.28 -64.66 16 25 Si 0.94 52.62 29.55 68.60 2.03 54.65 16 26 H -0.28 -14.95 7.11 99.48 0.71 -14.24 16 27 H -0.30 -17.26 7.11 99.48 0.71 -16.55 16 28 H -0.29 -16.61 7.11 99.48 0.71 -15.90 16 29 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.16 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.42 15.24 7.67 -96.75 -0.74 14.50 16 35 H 0.14 1.77 7.71 -2.39 -0.02 1.75 16 36 H 0.09 2.58 7.47 -2.39 -0.02 2.56 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.20 5.93 -2.39 -0.01 1.19 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 2.02 6.92 -2.39 -0.02 2.00 16 44 H 0.03 1.22 6.24 -2.38 -0.01 1.20 16 45 H 0.04 1.52 6.93 -2.38 -0.02 1.50 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.37 20.39 5.89 -92.71 -0.55 19.85 16 49 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -94.49 387.83 -2.16 -96.65 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.33 Total: 34.52 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 5.32 Total: -1.20 kcal Atomic # 7 Polarization: -152.58 SS G_CDS: -4.30 Total: -156.87 kcal Atomic # 8 Polarization: -99.01 SS G_CDS: -4.57 Total: -103.58 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 2.03 Total: 54.65 kcal Atomic # 16 Polarization: 76.14 SS G_CDS: -0.31 Total: 75.83 kcal Total: -94.49 -2.16 -96.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479822022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.882 kcal (2) G-P(sol) polarization free energy of solvation -94.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds