Wall clock time and date at job start Wed Apr 1 2020 04:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47063 * 2 1 4 4 C 1.34776 * 119.99977 * 84.65191 * 3 2 1 5 5 O 1.21275 * 120.00286 * 175.21639 * 4 3 2 6 6 C 1.50698 * 119.99827 * 355.21998 * 4 3 2 7 7 N 1.46506 * 109.47150 * 180.02562 * 6 4 3 8 8 C 1.46497 * 120.00298 * 84.99491 * 7 6 4 9 9 S 1.65606 * 119.99709 * 264.99758 * 7 6 4 10 10 O 1.42096 * 104.27280 * 206.07095 * 9 7 6 11 11 O 1.42102 * 104.27689 * 333.92776 * 9 7 6 12 12 C 1.81404 * 104.44802 * 89.99964 * 9 7 6 13 13 C 1.52997 * 109.46783 * 180.02562 * 12 9 7 14 14 C 1.46504 * 120.00348 * 264.65164 * 3 2 1 15 15 H 1.08999 * 110.88881 * 180.14975 * 14 3 2 16 16 C 1.55160 * 111.00116 * 56.26569 * 14 3 2 17 17 C 1.54324 * 102.94350 * 277.43228 * 16 14 3 18 18 N 1.47020 * 107.26948 * 337.80533 * 17 16 14 19 19 C 1.36942 * 125.64931 * 178.98616 * 18 17 16 20 20 H 1.07993 * 120.00442 * 174.96704 * 19 18 17 21 21 C 1.38811 * 119.99516 * 354.97295 * 19 18 17 22 22 N 1.31617 * 120.00660 * 5.27043 * 21 19 18 23 23 Si 1.86807 * 119.99676 * 185.27694 * 21 19 18 24 24 H 1.48498 * 109.47254 * 94.99777 * 23 21 19 25 25 H 1.48509 * 109.46528 * 214.99451 * 23 21 19 26 26 H 1.48494 * 109.47058 * 334.98939 * 23 21 19 27 27 C 1.47421 * 108.70539 * 358.94383 * 18 17 16 28 28 H 1.09011 * 109.47318 * 182.31638 * 1 2 3 29 29 H 1.09003 * 109.47281 * 302.31251 * 1 2 3 30 30 H 1.08994 * 109.47777 * 62.31579 * 1 2 3 31 31 H 1.08999 * 109.46703 * 239.99939 * 2 1 3 32 32 H 1.09001 * 109.47130 * 120.00501 * 2 1 3 33 33 H 1.09005 * 109.47022 * 299.99766 * 6 4 3 34 34 H 1.08993 * 109.47586 * 59.99476 * 6 4 3 35 35 H 1.09002 * 109.47215 * 89.99986 * 8 7 6 36 36 H 1.08992 * 109.47413 * 210.00154 * 8 7 6 37 37 H 1.08999 * 109.47178 * 330.00313 * 8 7 6 38 38 H 1.08997 * 109.46767 * 299.99789 * 12 9 7 39 39 H 1.08990 * 109.47019 * 59.99565 * 12 9 7 40 40 H 1.09003 * 109.47028 * 180.02562 * 13 12 9 41 41 H 1.08997 * 109.47205 * 299.99407 * 13 12 9 42 42 H 1.09000 * 109.47346 * 59.99566 * 13 12 9 43 43 H 1.09003 * 110.71770 * 35.79699 * 16 14 3 44 44 H 1.09001 * 110.71473 * 159.06671 * 16 14 3 45 45 H 1.08998 * 109.88294 * 97.22585 * 17 16 14 46 46 H 1.08998 * 109.87685 * 218.23963 * 17 16 14 47 47 H 0.96993 * 120.00680 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.37195 * 265.28931 * 27 18 17 49 49 H 1.09005 * 110.36774 * 142.96196 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1404 2.0528 1.1621 5 8 2.6256 3.1642 1.1722 6 6 1.6739 1.4226 2.4491 7 7 1.9134 2.3468 3.5603 8 6 0.9286 3.3846 3.8753 9 16 3.2976 2.2184 4.4603 10 8 2.9464 2.7668 5.7233 11 8 3.6732 0.8539 4.3329 12 6 4.4907 3.2890 3.6111 13 6 5.8269 3.2546 4.3555 14 6 2.3740 2.0324 -1.2632 15 1 2.7200 3.0516 -1.0910 16 6 1.1813 2.0101 -2.2554 17 6 1.2816 0.6047 -2.8849 18 7 2.6683 0.1475 -2.7132 19 6 3.1658 -1.0624 -3.1184 20 1 4.2203 -1.2732 -3.0193 21 6 2.3145 -2.0177 -3.6564 22 7 1.0498 -1.7248 -3.8736 23 14 2.9639 -3.7192 -4.0723 24 1 2.7032 -4.6397 -2.9365 25 1 2.2788 -4.2268 -5.2882 26 1 4.4255 -3.6435 -4.3229 27 6 3.4349 1.2076 -2.0337 28 1 -0.3634 -1.0269 0.0415 29 1 -0.3634 0.5493 0.8685 30 1 -0.3634 0.4774 -0.9099 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6080 1.2047 2.3816 34 1 2.2236 0.4972 2.6207 35 1 0.2076 2.9952 4.5941 36 1 1.4361 4.2497 4.3020 37 1 0.4091 3.6811 2.9640 38 1 4.6346 2.9345 2.5904 39 1 4.1118 4.3107 3.5907 40 1 6.5436 3.8982 3.8455 41 1 5.6833 3.6089 5.3763 42 1 6.2055 2.2327 4.3755 43 1 0.2364 2.1288 -1.7253 44 1 1.2979 2.7825 -3.0157 45 1 0.6005 -0.0783 -2.3772 46 1 1.0340 0.6549 -3.9452 47 1 0.4551 -2.3922 -4.2499 48 1 3.9454 1.8346 -2.7646 49 1 4.1532 0.7708 -1.3397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481778607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:17 Heat of formation + Delta-G solvation = -59.260878 kcal Electronic energy + Delta-G solvation = -31230.167244 eV Core-core repulsion = 27128.361576 eV Total energy + Delta-G solvation = -4101.805668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.16742 -37.86847 -37.27526 -36.16926 -35.72125 -34.70250 -33.26842 -32.45034 -30.36860 -29.52158 -28.75834 -26.99274 -25.47181 -24.52468 -24.00463 -22.83844 -21.00564 -20.15588 -19.05772 -18.55309 -17.99137 -17.22132 -17.06899 -16.58572 -16.46496 -15.76584 -15.05774 -14.95901 -14.73778 -14.29631 -14.21529 -13.93703 -13.79407 -13.43564 -13.25690 -13.07999 -12.85264 -12.75216 -12.64352 -12.37989 -12.22982 -12.16050 -11.98727 -11.95167 -11.76559 -11.71003 -11.59414 -11.24004 -11.02666 -10.95732 -10.82535 -10.80138 -10.51562 -10.32412 -10.18374 -9.98622 -9.86203 -9.72607 -8.97668 -8.71278 -8.30454 -6.89701 -5.82402 -3.16423 0.12147 2.36427 2.69912 3.26848 3.34323 3.41233 3.42006 3.68032 4.00070 4.36595 4.41702 4.58795 4.62468 4.64262 5.01338 5.07371 5.19203 5.29483 5.36500 5.37570 5.40054 5.41859 5.49865 5.57481 5.63560 5.63960 5.67753 5.73450 5.75840 5.82490 5.87859 6.11838 6.13301 6.22071 6.27061 6.42166 6.46093 6.55551 6.65402 6.76254 7.05118 7.46306 7.53021 7.73137 7.76009 8.14245 8.32149 9.11449 9.70627 10.35786 11.28374 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.003184 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.273570 B = 8791.522102 C = 9081.683674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.074 3.926 3 N -0.578 5.578 4 C 0.488 3.512 5 O -0.552 6.552 6 C 0.094 3.906 7 N -0.983 5.983 8 C 0.101 3.899 9 S 2.607 3.393 10 O -0.957 6.957 11 O -0.955 6.955 12 C -0.620 4.620 13 C -0.147 4.147 14 C 0.122 3.878 15 H 0.099 0.901 16 C -0.157 4.157 17 C 0.166 3.834 18 N -0.602 5.602 19 C -0.234 4.234 20 H 0.078 0.922 21 C -0.002 4.002 22 N -0.917 5.917 23 Si 0.909 3.091 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.124 3.876 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.253 0.747 48 H 0.030 0.970 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 9.825 13.881 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.049 4.049 3 N -0.309 5.309 4 C 0.274 3.726 5 O -0.431 6.431 6 C -0.036 4.036 7 N -0.819 5.819 8 C -0.045 4.045 9 S 2.701 3.299 10 O -0.947 6.947 11 O -0.946 6.946 12 C -0.750 4.750 13 C -0.205 4.205 14 C 0.018 3.982 15 H 0.117 0.883 16 C -0.196 4.196 17 C 0.042 3.958 18 N -0.329 5.329 19 C -0.362 4.362 20 H 0.096 0.904 21 C -0.199 4.199 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.003 4.003 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.047 0.953 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.361 9.678 14.540 17.470 hybrid contribution 0.295 -0.436 -1.125 1.242 sum 0.655 9.242 13.415 16.303 Atomic orbital electron populations 1.22323 0.96206 1.02296 1.01757 1.22246 0.94409 0.81699 1.06506 1.47892 1.63014 1.14444 1.05563 1.21234 0.79223 0.86255 0.85938 1.90619 1.45710 1.19928 1.86871 1.21458 1.05072 0.93051 0.83972 1.57087 1.36167 1.43228 1.45407 1.21432 0.92176 0.89503 1.01367 1.05204 0.74481 0.75657 0.74562 1.93580 1.81693 1.81086 1.38373 1.93587 1.82990 1.31278 1.86729 1.30435 1.12824 1.17432 1.14355 1.21523 0.94850 1.03953 1.00220 1.22257 0.96533 0.96778 0.82618 0.88306 1.23291 0.97314 1.01087 0.97910 1.21411 0.86877 0.88875 0.98679 1.44610 1.06238 1.14152 1.67897 1.19048 0.93085 0.88651 1.35384 0.90419 1.24779 0.95764 0.98296 1.01064 1.69957 1.03814 1.33351 1.49315 0.86150 0.77913 0.84406 0.77605 1.21494 1.21795 1.20689 1.21912 0.93426 0.90975 0.93957 0.91545 0.94057 0.91065 0.84047 0.91818 0.86684 0.85896 0.92192 0.91126 0.90854 0.84352 0.84984 0.90004 0.91292 0.91096 0.91689 0.91550 0.91760 0.94410 0.93673 0.95279 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.29 37.16 0.35 -2.02 16 2 C 0.07 1.17 4.88 -4.04 -0.02 1.15 16 3 N -0.58 -9.02 2.53 -163.68 -0.41 -9.44 16 4 C 0.49 7.06 7.69 -10.99 -0.08 6.97 16 5 O -0.55 -8.75 14.40 5.56 0.08 -8.67 16 6 C 0.09 1.12 4.78 -5.19 -0.02 1.09 16 7 N -0.98 -11.24 2.61 -123.06 -0.32 -11.56 16 8 C 0.10 0.94 10.20 59.85 0.61 1.55 16 9 S 2.61 31.84 5.38 -107.50 -0.58 31.27 16 10 O -0.96 -13.32 17.09 -57.54 -0.98 -14.30 16 11 O -0.96 -14.20 16.53 -57.54 -0.95 -15.15 16 12 C -0.62 -6.45 6.43 37.16 0.24 -6.21 16 13 C -0.15 -1.31 9.92 37.16 0.37 -0.94 16 14 C 0.12 2.07 3.67 -65.78 -0.24 1.83 16 15 H 0.10 1.64 7.02 -51.93 -0.36 1.28 16 16 C -0.16 -2.70 5.99 -24.89 -0.15 -2.85 16 17 C 0.17 3.58 4.16 -3.06 -0.01 3.57 16 18 N -0.60 -13.76 1.91 -170.08 -0.33 -14.08 16 19 C -0.23 -5.96 9.90 -15.06 -0.15 -6.11 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C 0.00 -0.06 5.48 -17.43 -0.10 -0.15 16 22 N -0.92 -24.59 10.34 55.49 0.57 -24.02 16 23 Si 0.91 20.84 29.56 -169.99 -5.02 15.82 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.12 2.41 6.54 -2.53 -0.02 2.39 16 28 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.04 0.48 6.33 -51.93 -0.33 0.15 16 30 H 0.07 1.11 4.73 -51.93 -0.25 0.87 16 31 H 0.14 2.84 4.31 -51.93 -0.22 2.62 16 32 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 33 H 0.12 1.14 6.33 -51.93 -0.33 0.81 16 34 H 0.12 1.47 5.97 -51.93 -0.31 1.16 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 37 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.14 1.59 7.22 -51.93 -0.37 1.22 16 39 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.04 6.77 -51.93 -0.35 0.69 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.46 4.31 -51.93 -0.22 1.23 16 46 H 0.04 0.94 7.64 -51.93 -0.40 0.54 16 47 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 383.22 15.07 5.77 5.77 Total: -1.00 -31.10 383.22 -9.07 -40.17 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.67 Total: 3.92 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 0.77 Total: 0.27 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.49 Total: -59.10 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.85 Total: -38.12 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 31.84 SS G_CDS: -0.58 Total: 31.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.10 -9.07 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481778607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.092 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds