Wall clock time and date at job start Wed Apr 1 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47063 * 2 1 4 4 C 1.34776 * 119.99977 * 84.65191 * 3 2 1 5 5 O 1.21275 * 120.00286 * 175.21639 * 4 3 2 6 6 C 1.50698 * 119.99827 * 355.21998 * 4 3 2 7 7 N 1.46506 * 109.47150 * 180.02562 * 6 4 3 8 8 C 1.46497 * 120.00298 * 84.99491 * 7 6 4 9 9 S 1.65606 * 119.99709 * 264.99758 * 7 6 4 10 10 O 1.42096 * 104.27280 * 206.07095 * 9 7 6 11 11 O 1.42102 * 104.27689 * 333.92776 * 9 7 6 12 12 C 1.81404 * 104.44802 * 89.99964 * 9 7 6 13 13 C 1.52997 * 109.46783 * 180.02562 * 12 9 7 14 14 C 1.46504 * 120.00348 * 264.65164 * 3 2 1 15 15 H 1.08999 * 110.88881 * 180.14975 * 14 3 2 16 16 C 1.55160 * 111.00116 * 56.26569 * 14 3 2 17 17 C 1.54324 * 102.94350 * 277.43228 * 16 14 3 18 18 N 1.47020 * 107.26948 * 337.80533 * 17 16 14 19 19 C 1.36942 * 125.64931 * 178.98616 * 18 17 16 20 20 H 1.07993 * 120.00442 * 174.96704 * 19 18 17 21 21 C 1.38811 * 119.99516 * 354.97295 * 19 18 17 22 22 N 1.31617 * 120.00660 * 5.27043 * 21 19 18 23 23 Si 1.86807 * 119.99676 * 185.27694 * 21 19 18 24 24 H 1.48498 * 109.47254 * 94.99777 * 23 21 19 25 25 H 1.48509 * 109.46528 * 214.99451 * 23 21 19 26 26 H 1.48494 * 109.47058 * 334.98939 * 23 21 19 27 27 C 1.47421 * 108.70539 * 358.94383 * 18 17 16 28 28 H 1.09011 * 109.47318 * 182.31638 * 1 2 3 29 29 H 1.09003 * 109.47281 * 302.31251 * 1 2 3 30 30 H 1.08994 * 109.47777 * 62.31579 * 1 2 3 31 31 H 1.08999 * 109.46703 * 239.99939 * 2 1 3 32 32 H 1.09001 * 109.47130 * 120.00501 * 2 1 3 33 33 H 1.09005 * 109.47022 * 299.99766 * 6 4 3 34 34 H 1.08993 * 109.47586 * 59.99476 * 6 4 3 35 35 H 1.09002 * 109.47215 * 89.99986 * 8 7 6 36 36 H 1.08992 * 109.47413 * 210.00154 * 8 7 6 37 37 H 1.08999 * 109.47178 * 330.00313 * 8 7 6 38 38 H 1.08997 * 109.46767 * 299.99789 * 12 9 7 39 39 H 1.08990 * 109.47019 * 59.99565 * 12 9 7 40 40 H 1.09003 * 109.47028 * 180.02562 * 13 12 9 41 41 H 1.08997 * 109.47205 * 299.99407 * 13 12 9 42 42 H 1.09000 * 109.47346 * 59.99566 * 13 12 9 43 43 H 1.09003 * 110.71770 * 35.79699 * 16 14 3 44 44 H 1.09001 * 110.71473 * 159.06671 * 16 14 3 45 45 H 1.08998 * 109.88294 * 97.22585 * 17 16 14 46 46 H 1.08998 * 109.87685 * 218.23963 * 17 16 14 47 47 H 0.96993 * 120.00680 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.37195 * 265.28931 * 27 18 17 49 49 H 1.09005 * 110.36774 * 142.96196 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1404 2.0528 1.1621 5 8 2.6256 3.1642 1.1722 6 6 1.6739 1.4226 2.4491 7 7 1.9134 2.3468 3.5603 8 6 0.9286 3.3846 3.8753 9 16 3.2976 2.2184 4.4603 10 8 2.9464 2.7668 5.7233 11 8 3.6732 0.8539 4.3329 12 6 4.4907 3.2890 3.6111 13 6 5.8269 3.2546 4.3555 14 6 2.3740 2.0324 -1.2632 15 1 2.7200 3.0516 -1.0910 16 6 1.1813 2.0101 -2.2554 17 6 1.2816 0.6047 -2.8849 18 7 2.6683 0.1475 -2.7132 19 6 3.1658 -1.0624 -3.1184 20 1 4.2203 -1.2732 -3.0193 21 6 2.3145 -2.0177 -3.6564 22 7 1.0498 -1.7248 -3.8736 23 14 2.9639 -3.7192 -4.0723 24 1 2.7032 -4.6397 -2.9365 25 1 2.2788 -4.2268 -5.2882 26 1 4.4255 -3.6435 -4.3229 27 6 3.4349 1.2076 -2.0337 28 1 -0.3634 -1.0269 0.0415 29 1 -0.3634 0.5493 0.8685 30 1 -0.3634 0.4774 -0.9099 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6080 1.2047 2.3816 34 1 2.2236 0.4972 2.6207 35 1 0.2076 2.9952 4.5941 36 1 1.4361 4.2497 4.3020 37 1 0.4091 3.6811 2.9640 38 1 4.6346 2.9345 2.5904 39 1 4.1118 4.3107 3.5907 40 1 6.5436 3.8982 3.8455 41 1 5.6833 3.6089 5.3763 42 1 6.2055 2.2327 4.3755 43 1 0.2364 2.1288 -1.7253 44 1 1.2979 2.7825 -3.0157 45 1 0.6005 -0.0783 -2.3772 46 1 1.0340 0.6549 -3.9452 47 1 0.4551 -2.3922 -4.2499 48 1 3.9454 1.8346 -2.7646 49 1 4.1532 0.7708 -1.3397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481778607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:16 Heat of formation + Delta-G solvation = -79.324533 kcal Electronic energy + Delta-G solvation = -31231.037269 eV Core-core repulsion = 27128.361576 eV Total energy + Delta-G solvation = -4102.675693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.41577 -39.25083 -38.29887 -37.18579 -36.69320 -36.12118 -34.18908 -34.03388 -31.74585 -31.08484 -29.83260 -28.43895 -26.55902 -26.12572 -24.80668 -24.04977 -22.31458 -21.88692 -20.14776 -19.68653 -18.95274 -18.85844 -18.37203 -17.63515 -17.43358 -16.97107 -16.65007 -16.17793 -15.93200 -15.66548 -15.41801 -15.10432 -15.01683 -14.44162 -14.23547 -14.13240 -14.02233 -13.81376 -13.72464 -13.64526 -13.47189 -13.40655 -13.28393 -13.26286 -12.87807 -12.81716 -12.70687 -12.58896 -12.47181 -12.39569 -12.15225 -12.00861 -11.98508 -11.78617 -11.71943 -11.57326 -11.46794 -10.98213 -10.61910 -9.95709 -9.63030 -8.74392 -7.80026 -5.13759 -0.79907 1.44646 1.50182 1.52016 1.56486 1.59073 2.08745 2.53054 2.75855 3.06470 3.39330 3.49778 3.55806 3.71837 3.79183 3.85837 3.94787 4.07143 4.17391 4.24805 4.33987 4.36328 4.41320 4.54540 4.65596 4.66711 4.70412 4.72810 4.81407 4.86594 4.90346 4.93467 4.98783 5.00169 5.04206 5.07149 5.08897 5.31343 5.40754 5.47829 5.53784 5.73297 5.74362 5.90741 6.26213 6.54327 7.14445 7.16870 7.81615 8.45957 9.28964 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.003184 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.273570 B = 8791.522102 C = 9081.683674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.077 3.923 3 N -0.582 5.582 4 C 0.490 3.510 5 O -0.563 6.563 6 C 0.095 3.905 7 N -0.985 5.985 8 C 0.091 3.909 9 S 2.612 3.388 10 O -0.977 6.977 11 O -0.987 6.987 12 C -0.609 4.609 13 C -0.157 4.157 14 C 0.135 3.865 15 H 0.110 0.890 16 C -0.142 4.142 17 C 0.176 3.824 18 N -0.614 5.614 19 C -0.240 4.240 20 H 0.075 0.925 21 C -0.048 4.048 22 N -0.938 5.938 23 Si 0.965 3.035 24 H -0.286 1.286 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.122 3.878 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.052 0.948 46 H -0.004 1.004 47 H 0.247 0.753 48 H 0.032 0.968 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 10.998 15.376 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.045 4.045 3 N -0.313 5.313 4 C 0.277 3.723 5 O -0.443 6.443 6 C -0.034 4.034 7 N -0.821 5.821 8 C -0.053 4.053 9 S 2.708 3.292 10 O -0.967 6.967 11 O -0.977 6.977 12 C -0.741 4.741 13 C -0.216 4.216 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.181 4.181 17 C 0.052 3.948 18 N -0.341 5.341 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.242 4.242 22 N -0.587 5.587 23 Si 0.795 3.205 24 H -0.213 1.213 25 H -0.226 1.226 26 H -0.201 1.201 27 C -0.004 4.004 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.014 0.986 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.362 10.864 16.072 19.403 hybrid contribution 0.366 -0.732 -1.580 1.780 sum 0.728 10.132 14.492 17.697 Atomic orbital electron populations 1.22229 0.94812 1.02550 1.02227 1.22086 0.95543 0.81600 1.05307 1.47885 1.63481 1.14406 1.05525 1.21648 0.78507 0.86010 0.86128 1.90613 1.46087 1.20557 1.87035 1.21516 1.06471 0.92772 0.82632 1.57019 1.36451 1.43751 1.44835 1.21657 0.92138 0.89365 1.02144 1.04927 0.74726 0.75137 0.74401 1.93550 1.82187 1.81181 1.39785 1.93543 1.83552 1.33478 1.87165 1.30323 1.12896 1.17462 1.13407 1.21685 0.94359 1.04530 1.01002 1.22054 0.95165 0.96729 0.82994 0.87183 1.23147 0.98413 0.98374 0.98140 1.21188 0.86140 0.91248 0.96247 1.44743 1.07147 1.14192 1.68013 1.19277 0.93060 0.89908 1.34623 0.90727 1.25386 0.96093 1.01028 1.01735 1.70130 1.04562 1.33724 1.50259 0.85270 0.77433 0.80987 0.76855 1.21260 1.22576 1.20147 1.22012 0.93942 0.90437 0.93979 0.91697 0.90954 0.92820 0.88198 0.90016 0.84166 0.85912 0.90997 0.90270 0.90142 0.85252 0.83469 0.88449 0.90105 0.91108 0.90001 0.90471 0.93020 0.98602 0.94397 0.95020 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.29 71.98 0.67 -3.58 16 2 C 0.08 2.36 4.88 86.38 0.42 2.78 16 3 N -0.58 -17.10 2.53 -790.14 -2.00 -19.10 16 4 C 0.49 12.96 7.69 87.66 0.67 13.64 16 5 O -0.56 -16.36 14.40 -3.02 -0.04 -16.41 16 6 C 0.10 2.02 4.78 85.63 0.41 2.43 16 7 N -0.98 -20.15 2.61 -543.23 -1.42 -21.57 16 8 C 0.09 1.45 10.20 127.77 1.30 2.75 16 9 S 2.61 59.66 5.38 -56.49 -0.30 59.35 16 10 O -0.98 -25.67 17.09 -127.65 -2.18 -27.85 16 11 O -0.99 -28.40 16.53 -127.65 -2.11 -30.51 16 12 C -0.61 -11.42 6.43 71.98 0.46 -10.96 16 13 C -0.16 -2.48 9.92 71.98 0.71 -1.77 16 14 C 0.14 4.37 3.67 46.38 0.17 4.54 16 15 H 0.11 3.39 7.02 -2.39 -0.02 3.37 16 16 C -0.14 -4.73 5.99 31.78 0.19 -4.54 16 17 C 0.18 7.74 4.16 86.73 0.36 8.10 16 18 N -0.61 -28.48 1.91 -692.01 -1.32 -29.80 16 19 C -0.24 -12.44 9.90 84.03 0.83 -11.61 16 20 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 21 C -0.05 -2.54 5.48 84.86 0.47 -2.07 16 22 N -0.94 -51.64 10.34 21.65 0.22 -51.42 16 23 Si 0.96 43.43 29.56 68.60 2.03 45.46 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.12 4.70 6.54 86.86 0.57 5.27 16 28 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.07 1.44 6.33 -2.39 -0.02 1.42 16 30 H 0.05 1.62 4.73 -2.39 -0.01 1.61 16 31 H 0.10 4.03 4.31 -2.39 -0.01 4.02 16 32 H 0.08 2.16 6.71 -2.39 -0.02 2.15 16 33 H 0.14 2.25 6.33 -2.38 -0.02 2.24 16 34 H 0.12 2.69 5.97 -2.39 -0.01 2.67 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 37 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 38 H 0.13 2.75 7.22 -2.39 -0.02 2.73 16 39 H 0.15 2.30 8.14 -2.40 -0.02 2.29 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 2.47 6.77 -2.39 -0.02 2.46 16 44 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.05 2.40 4.31 -2.39 -0.01 2.39 16 46 H 0.00 -0.22 7.64 -2.39 -0.02 -0.24 16 47 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 48 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -67.30 383.22 1.07 -66.23 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.95 Total: 20.62 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 7.24 Total: 4.99 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -4.51 Total: -121.89 kcal Atomic # 8 Polarization: -70.44 SS G_CDS: -4.33 Total: -74.77 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 59.66 SS G_CDS: -0.30 Total: 59.35 kcal Total: -67.30 1.07 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481778607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.094 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds