Wall clock time and date at job start Wed Apr 1 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99957 * 2 1 4 4 S 1.65598 * 119.99969 * 179.97438 * 2 1 3 5 5 O 1.42099 * 104.27743 * 333.92790 * 4 2 1 6 6 O 1.42104 * 104.27534 * 206.07806 * 4 2 1 7 7 C 1.81399 * 104.45081 * 90.00406 * 4 2 1 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.52999 * 109.47001 * 295.13027 * 14 13 12 16 16 N 1.46500 * 109.46759 * 179.97438 * 15 14 13 17 17 C 1.36943 * 120.00115 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47350 * 90.00093 * 21 19 17 23 23 H 1.48499 * 109.46916 * 210.00488 * 21 19 17 24 24 H 1.48504 * 109.47003 * 330.00298 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 26 26 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 27 27 H 1.09004 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47205 * 300.00884 * 1 2 3 29 29 H 1.09006 * 109.46695 * 60.00903 * 1 2 3 30 30 H 1.09002 * 109.46516 * 269.99540 * 3 2 1 31 31 H 1.08995 * 109.47115 * 29.99021 * 3 2 1 32 32 H 1.08997 * 109.47071 * 149.99648 * 3 2 1 33 33 H 1.09001 * 109.46570 * 59.99831 * 7 4 2 34 34 H 1.09001 * 109.47092 * 300.00079 * 7 4 2 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 40 40 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 41 41 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 42 42 H 1.08991 * 109.47450 * 299.99495 * 15 14 13 43 43 H 1.08999 * 109.47142 * 60.00302 * 15 14 13 44 44 H 0.97005 * 120.00425 * 359.97438 * 16 15 14 45 45 H 0.96996 * 119.99916 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.50232 * 301.42239 * 25 13 12 47 47 H 1.09007 * 109.52628 * 181.33900 * 25 13 12 48 48 H 1.08994 * 109.58580 * 353.38021 * 26 10 8 49 49 H 1.09006 * 109.57831 * 113.65514 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3970 -2.3558 0.6063 6 8 3.5395 -1.1188 0.6059 7 6 2.5195 -1.8269 -1.7558 8 6 3.2706 -3.1267 -1.8871 9 8 3.6185 -3.7290 -0.8936 10 7 3.5558 -3.6198 -3.1086 11 6 4.2879 -4.8854 -3.2527 12 6 3.4822 -5.8244 -4.1561 13 6 3.1832 -5.1133 -5.4815 14 6 2.4070 -6.0576 -6.4016 15 6 3.2903 -7.2516 -6.7692 16 7 2.5468 -8.1561 -7.6498 17 6 3.1380 -9.3020 -8.1112 18 1 4.1525 -9.5386 -7.8262 19 6 2.4334 -10.1593 -8.9451 20 7 1.1972 -9.8706 -9.2928 21 14 3.2401 -11.7219 -9.5750 22 1 2.9781 -12.8321 -8.6243 23 1 2.6788 -12.0669 -10.9058 24 1 4.7048 -11.5088 -9.6957 25 6 2.3468 -3.8599 -5.2145 26 6 3.1415 -2.9012 -4.3213 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 2.3792 1.5833 -1.0277 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.0868 -1.0296 -2.2361 34 1 1.5453 -1.9197 -2.2359 35 1 5.2630 -4.6946 -3.7009 36 1 4.4197 -5.3449 -2.2732 37 1 4.0590 -6.7293 -4.3470 38 1 2.5451 -6.0865 -3.6649 39 1 4.1205 -4.8292 -5.9599 40 1 1.5129 -6.4114 -5.8883 41 1 2.1189 -5.5259 -7.3084 42 1 4.1843 -6.8979 -7.2825 43 1 3.5782 -7.7834 -5.8624 44 1 1.6354 -7.9438 -7.9055 45 1 0.7047 -10.4698 -9.8752 46 1 1.4204 -4.1405 -4.7136 47 1 2.1149 -3.3685 -6.1595 48 1 2.5148 -2.0527 -4.0471 49 1 4.0233 -2.5467 -4.8551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482007520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:17 Heat of formation + Delta-G solvation = -93.954454 kcal Electronic energy + Delta-G solvation = -28853.794335 eV Core-core repulsion = 24750.484241 eV Total energy + Delta-G solvation = -4103.310094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.65406 -38.22962 -37.53337 -36.74915 -36.18147 -35.47855 -33.72153 -32.02765 -31.30444 -30.25647 -28.63177 -28.33713 -25.25597 -25.11275 -23.57229 -23.06545 -21.45496 -20.51855 -19.62452 -19.11996 -18.45726 -17.29921 -17.17187 -17.00046 -16.89197 -16.01064 -15.85941 -15.01052 -14.93606 -14.82229 -14.71339 -14.27184 -14.16934 -13.86991 -13.85488 -13.39020 -13.31737 -13.14060 -13.09753 -12.91825 -12.86818 -12.77394 -12.40961 -12.35040 -12.01189 -11.98794 -11.61259 -11.38366 -11.33339 -11.22047 -11.06061 -10.79785 -10.67681 -10.59386 -10.35271 -10.19778 -9.97472 -9.69071 -9.66639 -9.03911 -8.86393 -6.91971 -5.77116 -3.05671 -0.31393 2.00366 2.16266 2.51709 3.41514 3.43252 3.48200 3.49863 3.66623 3.70966 4.23709 4.30614 4.41425 4.53534 4.58570 4.67291 4.70421 4.81256 4.83296 4.88277 5.02141 5.04156 5.10562 5.26445 5.26784 5.27736 5.37176 5.49092 5.52584 5.57243 5.60162 5.71928 5.78566 5.86994 5.91648 6.02207 6.05769 6.21379 6.32021 6.37619 6.40445 6.83933 6.86171 6.90143 7.52865 7.69292 8.42213 9.52993 10.11823 10.45900 11.45919 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.001775 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.967476 B =15773.382617 C =15998.303222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.010 6.010 3 C 0.079 3.921 4 S 2.643 3.357 5 O -0.935 6.935 6 O -0.937 6.937 7 C -0.675 4.675 8 C 0.543 3.457 9 O -0.539 6.539 10 N -0.595 5.595 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.084 4.084 14 C -0.120 4.120 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.132 4.132 26 C 0.102 3.898 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.016 0.984 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 28.060 15.962 32.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.849 5.849 3 C -0.066 4.066 4 S 2.730 3.270 5 O -0.925 6.925 6 O -0.927 6.927 7 C -0.802 4.802 8 C 0.329 3.671 9 O -0.418 6.418 10 N -0.327 5.327 11 C -0.014 4.014 12 C -0.171 4.171 13 C -0.103 4.103 14 C -0.158 4.158 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.170 4.170 26 C -0.021 4.021 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.216 0.784 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.669 27.149 17.158 32.124 hybrid contribution -0.163 -0.513 -1.546 1.637 sum 0.506 26.636 15.612 30.878 Atomic orbital electron populations 1.21636 0.78006 1.04133 1.02562 1.57509 1.15591 1.22017 1.89822 1.21642 0.97727 0.85092 1.02125 1.04370 0.73994 0.72686 0.75947 1.93596 1.64768 1.62232 1.71889 1.93576 1.44244 1.82855 1.72014 1.31188 1.10833 1.05656 1.32563 1.19122 0.79295 0.84648 0.84056 1.90853 1.54210 1.60576 1.36117 1.48015 1.55698 1.23845 1.05181 1.21835 0.94554 0.82951 1.02110 1.22132 1.01234 0.98555 0.95131 1.21156 0.99083 0.94466 0.95561 1.21755 0.99017 0.96508 0.98557 1.20697 0.93825 0.89700 0.93314 1.42386 1.15354 1.23316 1.56828 1.19241 0.97291 0.97622 1.22868 0.91214 1.24754 0.96371 0.99279 1.00758 1.69660 1.09997 1.38363 1.40304 0.86178 0.78371 0.83520 0.78061 1.21704 1.21760 1.20772 1.22018 0.98992 0.96268 0.99692 1.21941 0.99735 0.94994 0.85422 0.89413 0.91371 0.91939 0.92614 0.90340 0.89546 0.82334 0.82236 0.90824 0.88589 0.89310 0.91276 0.90828 0.91977 0.91884 0.96625 0.96234 0.78373 0.93535 0.91225 0.90146 0.89793 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 10.62 59.85 0.64 0.98 16 2 N -1.01 -6.00 3.52 -129.19 -0.45 -6.45 16 3 C 0.08 0.31 10.69 59.85 0.64 0.95 16 4 S 2.64 25.66 4.55 -107.50 -0.49 25.17 16 5 O -0.93 -12.44 16.57 -57.55 -0.95 -13.39 16 6 O -0.94 -12.09 16.57 -57.55 -0.95 -13.05 16 7 C -0.68 -4.56 5.01 36.00 0.18 -4.38 16 8 C 0.54 6.17 7.72 -10.99 -0.08 6.09 16 9 O -0.54 -8.35 15.28 5.56 0.08 -8.27 16 10 N -0.60 -5.91 2.97 -172.74 -0.51 -6.43 16 11 C 0.11 1.14 6.42 -3.71 -0.02 1.12 16 12 C -0.13 -1.53 5.16 -26.45 -0.14 -1.66 16 13 C -0.08 -0.93 2.15 -90.42 -0.19 -1.13 16 14 C -0.12 -1.80 4.80 -26.73 -0.13 -1.93 16 15 C 0.15 2.97 6.02 -4.04 -0.02 2.95 16 16 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 17 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.13 -1.12 5.37 -26.59 -0.14 -1.26 16 26 C 0.10 0.71 6.34 -3.68 -0.02 0.68 16 27 H 0.09 0.44 6.87 -51.93 -0.36 0.08 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.19 8.07 -51.93 -0.42 -0.23 16 32 H 0.09 0.44 6.91 -51.93 -0.36 0.08 16 33 H 0.16 0.51 7.94 -51.92 -0.41 0.10 16 34 H 0.16 0.59 7.69 -51.92 -0.40 0.19 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.15 7.00 -51.93 -0.36 0.79 16 37 H 0.09 1.09 6.52 -51.93 -0.34 0.75 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.02 0.39 6.53 -51.93 -0.34 0.05 16 44 H 0.38 10.24 7.67 -40.82 -0.31 9.92 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 48 H 0.08 0.36 5.93 -51.93 -0.31 0.05 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 399.76 15.07 6.02 6.02 Total: -1.00 -39.00 399.76 -9.67 -48.67 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.23 Total: 2.05 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 0.45 Total: -5.05 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.58 Total: -59.68 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.82 Total: -34.70 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 25.66 SS G_CDS: -0.49 Total: 25.17 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.00 -9.67 -48.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482007520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.289 kcal (2) G-P(sol) polarization free energy of solvation -38.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds