Wall clock time and date at job start Wed Apr 1 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99957 * 2 1 4 4 S 1.65598 * 119.99969 * 179.97438 * 2 1 3 5 5 O 1.42099 * 104.27743 * 333.92790 * 4 2 1 6 6 O 1.42104 * 104.27534 * 206.07806 * 4 2 1 7 7 C 1.81399 * 104.45081 * 90.00406 * 4 2 1 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.52999 * 109.47001 * 295.13027 * 14 13 12 16 16 N 1.46500 * 109.46759 * 179.97438 * 15 14 13 17 17 C 1.36943 * 120.00115 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47350 * 90.00093 * 21 19 17 23 23 H 1.48499 * 109.46916 * 210.00488 * 21 19 17 24 24 H 1.48504 * 109.47003 * 330.00298 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 26 26 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 27 27 H 1.09004 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47205 * 300.00884 * 1 2 3 29 29 H 1.09006 * 109.46695 * 60.00903 * 1 2 3 30 30 H 1.09002 * 109.46516 * 269.99540 * 3 2 1 31 31 H 1.08995 * 109.47115 * 29.99021 * 3 2 1 32 32 H 1.08997 * 109.47071 * 149.99648 * 3 2 1 33 33 H 1.09001 * 109.46570 * 59.99831 * 7 4 2 34 34 H 1.09001 * 109.47092 * 300.00079 * 7 4 2 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 40 40 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 41 41 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 42 42 H 1.08991 * 109.47450 * 299.99495 * 15 14 13 43 43 H 1.08999 * 109.47142 * 60.00302 * 15 14 13 44 44 H 0.97005 * 120.00425 * 359.97438 * 16 15 14 45 45 H 0.96996 * 119.99916 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.50232 * 301.42239 * 25 13 12 47 47 H 1.09007 * 109.52628 * 181.33900 * 25 13 12 48 48 H 1.08994 * 109.58580 * 353.38021 * 26 10 8 49 49 H 1.09006 * 109.57831 * 113.65514 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3970 -2.3558 0.6063 6 8 3.5395 -1.1188 0.6059 7 6 2.5195 -1.8269 -1.7558 8 6 3.2706 -3.1267 -1.8871 9 8 3.6185 -3.7290 -0.8936 10 7 3.5558 -3.6198 -3.1086 11 6 4.2879 -4.8854 -3.2527 12 6 3.4822 -5.8244 -4.1561 13 6 3.1832 -5.1133 -5.4815 14 6 2.4070 -6.0576 -6.4016 15 6 3.2903 -7.2516 -6.7692 16 7 2.5468 -8.1561 -7.6498 17 6 3.1380 -9.3020 -8.1112 18 1 4.1525 -9.5386 -7.8262 19 6 2.4334 -10.1593 -8.9451 20 7 1.1972 -9.8706 -9.2928 21 14 3.2401 -11.7219 -9.5750 22 1 2.9781 -12.8321 -8.6243 23 1 2.6788 -12.0669 -10.9058 24 1 4.7048 -11.5088 -9.6957 25 6 2.3468 -3.8599 -5.2145 26 6 3.1415 -2.9012 -4.3213 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 2.3792 1.5833 -1.0277 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.0868 -1.0296 -2.2361 34 1 1.5453 -1.9197 -2.2359 35 1 5.2630 -4.6946 -3.7009 36 1 4.4197 -5.3449 -2.2732 37 1 4.0590 -6.7293 -4.3470 38 1 2.5451 -6.0865 -3.6649 39 1 4.1205 -4.8292 -5.9599 40 1 1.5129 -6.4114 -5.8883 41 1 2.1189 -5.5259 -7.3084 42 1 4.1843 -6.8979 -7.2825 43 1 3.5782 -7.7834 -5.8624 44 1 1.6354 -7.9438 -7.9055 45 1 0.7047 -10.4698 -9.8752 46 1 1.4204 -4.1405 -4.7136 47 1 2.1149 -3.3685 -6.1595 48 1 2.5148 -2.0527 -4.0471 49 1 4.0233 -2.5467 -4.8551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482007520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:15 Heat of formation + Delta-G solvation = -124.455268 kcal Electronic energy + Delta-G solvation = -28855.116949 eV Core-core repulsion = 24750.484241 eV Total energy + Delta-G solvation = -4104.632709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47800 -39.18006 -38.35689 -37.28175 -37.01588 -36.81065 -35.17600 -33.17052 -32.62773 -31.13920 -29.68915 -28.91829 -26.60645 -25.57981 -24.72620 -24.29835 -22.72036 -21.59688 -20.40159 -19.80648 -19.20905 -19.03835 -17.99082 -17.89076 -17.54110 -16.71083 -16.69818 -16.58206 -15.85770 -15.51325 -15.46783 -15.39486 -15.31549 -15.05736 -14.90377 -14.47484 -14.32244 -14.08714 -13.90701 -13.66851 -13.60690 -13.29914 -13.27492 -13.19040 -13.05596 -12.85948 -12.56859 -12.54439 -12.52221 -12.32941 -12.25706 -12.12946 -12.04042 -11.99209 -11.65587 -11.55663 -11.30012 -11.11438 -10.89075 -10.02805 -9.84372 -9.00454 -7.97210 -5.25990 -0.98506 1.21297 1.45870 1.47856 1.55442 1.56219 1.84472 2.54608 2.76651 3.05496 3.08106 3.36347 3.68869 3.76240 3.79301 3.84400 3.87798 4.07184 4.13915 4.20942 4.30670 4.39311 4.50971 4.53372 4.53541 4.62990 4.64024 4.73941 4.81599 4.82043 4.87962 4.93944 4.99791 5.03887 5.04588 5.07227 5.07968 5.15975 5.29643 5.35754 5.47769 5.49087 5.55849 5.56352 6.11719 6.26072 6.74155 7.31585 8.09238 8.31266 9.26434 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.001775 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.967476 B =15773.382617 C =15998.303222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -1.003 6.003 3 C 0.070 3.930 4 S 2.638 3.362 5 O -0.986 6.986 6 O -0.982 6.982 7 C -0.656 4.656 8 C 0.529 3.471 9 O -0.594 6.594 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.128 4.128 13 C -0.076 4.076 14 C -0.108 4.108 15 C 0.148 3.852 16 N -0.750 5.750 17 C -0.247 4.247 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.975 3.025 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.269 1.269 25 C -0.128 4.128 26 C 0.097 3.903 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.205 0.795 34 H 0.199 0.801 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.123 0.877 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 30.817 14.506 34.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.844 5.844 3 C -0.074 4.074 4 S 2.730 3.270 5 O -0.976 6.976 6 O -0.972 6.972 7 C -0.786 4.786 8 C 0.316 3.684 9 O -0.476 6.476 10 N -0.324 5.324 11 C -0.014 4.014 12 C -0.166 4.166 13 C -0.095 4.095 14 C -0.146 4.146 15 C 0.022 3.978 16 N -0.392 5.392 17 C -0.379 4.379 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.194 1.194 25 C -0.166 4.166 26 C -0.024 4.024 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.222 0.778 34 H 0.216 0.784 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.119 0.881 48 H 0.141 0.859 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.884 29.951 15.737 33.845 hybrid contribution -0.214 -1.329 -1.112 1.746 sum 0.670 28.622 14.625 32.149 Atomic orbital electron populations 1.21859 0.76765 1.04008 1.04464 1.57186 1.16124 1.21180 1.89926 1.21894 0.97045 0.84262 1.04228 1.03965 0.72885 0.72891 0.77227 1.93532 1.65634 1.64225 1.74199 1.93517 1.46052 1.83503 1.74165 1.31030 1.12982 1.04432 1.30115 1.19851 0.79094 0.85801 0.83657 1.90840 1.56386 1.62440 1.37941 1.48151 1.54884 1.23386 1.05947 1.21721 0.95368 0.83520 1.00805 1.22041 1.00391 0.98510 0.95690 1.21105 0.99560 0.94814 0.94032 1.21630 0.98126 0.95411 0.99384 1.20912 0.94337 0.90476 0.92051 1.42649 1.15317 1.23667 1.57614 1.19653 0.97514 0.98474 1.22272 0.90776 1.25602 0.97095 1.02674 1.01647 1.69812 1.11396 1.39539 1.41294 0.85124 0.78014 0.79496 0.77041 1.21512 1.21945 1.19373 1.21998 0.98348 0.95193 1.01103 1.22276 1.01134 0.95148 0.83842 0.90566 0.90915 0.88635 0.89449 0.88695 0.91295 0.77765 0.78374 0.89087 0.90733 0.90661 0.92863 0.89684 0.93141 0.91632 0.96240 0.96361 0.79539 0.93957 0.91824 0.88140 0.85940 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.62 127.77 1.36 1.82 16 2 N -1.00 -9.88 3.52 -562.66 -1.98 -11.85 16 3 C 0.07 0.37 10.69 127.77 1.37 1.74 16 4 S 2.64 49.92 4.55 -56.49 -0.26 49.67 16 5 O -0.99 -27.32 16.57 -127.64 -2.11 -29.44 16 6 O -0.98 -26.10 16.57 -127.64 -2.12 -28.22 16 7 C -0.66 -6.64 5.01 71.24 0.36 -6.28 16 8 C 0.53 11.19 7.72 87.66 0.68 11.87 16 9 O -0.59 -18.95 15.28 -3.03 -0.05 -18.99 16 10 N -0.59 -10.30 2.97 -818.81 -2.43 -12.74 16 11 C 0.11 2.23 6.42 86.36 0.55 2.78 16 12 C -0.13 -2.90 5.16 30.78 0.16 -2.74 16 13 C -0.08 -1.53 2.15 -10.66 -0.02 -1.56 16 14 C -0.11 -3.11 4.80 30.60 0.15 -2.97 16 15 C 0.15 5.76 6.02 86.38 0.52 6.27 16 16 N -0.75 -38.54 5.60 -343.46 -1.92 -40.47 16 17 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 20 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 21 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 C -0.13 -1.70 5.37 30.69 0.16 -1.54 16 26 C 0.10 0.88 6.34 86.38 0.55 1.42 16 27 H 0.08 0.68 6.87 -2.38 -0.02 0.66 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 0.20 8.07 -2.39 -0.02 0.18 16 32 H 0.07 0.63 6.91 -2.39 -0.02 0.62 16 33 H 0.21 0.15 7.94 -2.39 -0.02 0.13 16 34 H 0.20 0.46 7.69 -2.39 -0.02 0.45 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 37 H 0.07 1.87 6.52 -2.39 -0.02 1.86 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.02 0.73 6.53 -2.39 -0.02 0.71 16 44 H 0.37 20.28 7.67 -92.70 -0.71 19.57 16 45 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.12 0.21 5.93 -2.39 -0.01 0.20 16 49 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -89.98 399.76 -1.20 -91.18 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.23 Total: 18.27 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 7.13 Total: -6.43 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -6.05 Total: -124.54 kcal Atomic # 8 Polarization: -72.37 SS G_CDS: -4.28 Total: -76.65 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: 49.92 SS G_CDS: -0.26 Total: 49.67 kcal Total: -89.98 -1.20 -91.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482007520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.278 kcal (2) G-P(sol) polarization free energy of solvation -89.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds