Wall clock time and date at job start Wed Apr 1 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00312 * 2 1 4 4 C 1.50697 * 109.46978 * 274.99855 * 3 2 1 5 5 O 1.21274 * 120.00450 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99489 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99474 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47738 * 34.99759 * 7 6 4 9 9 C 1.52996 * 109.47249 * 274.99290 * 7 6 4 10 10 C 1.52997 * 109.47165 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47592 * 60.00300 * 10 9 7 12 12 C 1.53006 * 109.46626 * 300.00035 * 11 10 9 13 13 C 1.52997 * 109.47164 * 59.99702 * 12 11 10 14 14 H 1.09000 * 109.47140 * 60.00051 * 13 12 11 15 15 C 1.52996 * 109.46975 * 179.97438 * 13 12 11 16 16 N 1.46502 * 109.47446 * 294.99841 * 15 13 12 17 17 C 1.36939 * 120.00215 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99784 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00015 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99875 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99960 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47332 * 120.00121 * 21 19 17 24 24 H 1.48502 * 109.47068 * 240.00264 * 21 19 17 25 25 S 1.65602 * 119.99684 * 179.97438 * 2 1 3 26 26 C 1.81410 * 104.45029 * 270.00219 * 25 2 1 27 27 O 1.42097 * 104.27957 * 26.07077 * 25 2 1 28 28 O 1.42097 * 104.27907 * 153.93150 * 25 2 1 29 29 H 1.09006 * 109.46398 * 89.99772 * 1 2 3 30 30 H 1.09000 * 109.47467 * 209.99750 * 1 2 3 31 31 H 1.08997 * 109.46540 * 330.00379 * 1 2 3 32 32 H 1.09006 * 109.46977 * 154.99494 * 3 2 1 33 33 H 1.08997 * 109.46950 * 35.00144 * 3 2 1 34 34 H 0.96992 * 120.00293 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.47054 * 300.00354 * 9 7 6 36 36 H 1.09001 * 109.46997 * 60.00087 * 9 7 6 37 37 H 1.09000 * 109.47140 * 299.99954 * 10 9 7 38 38 H 1.09002 * 109.47045 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.47839 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47160 * 59.99666 * 11 10 9 41 41 H 1.09001 * 109.46998 * 179.97438 * 12 11 10 42 42 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 43 43 H 1.08998 * 109.47140 * 55.00356 * 15 13 12 44 44 H 1.09000 * 109.47097 * 175.00271 * 15 13 12 45 45 H 0.96997 * 119.99923 * 0.02562 * 16 15 13 46 46 H 0.97002 * 120.00037 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.46724 * 59.99951 * 26 25 2 48 48 H 1.08990 * 109.47281 * 180.02562 * 26 25 2 49 49 H 1.08998 * 109.46531 * 299.99993 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 8 1.8783 1.1230 -2.3337 6 7 2.9860 2.9236 -1.6607 7 6 3.1265 3.4063 -3.0367 8 1 2.2348 3.1449 -3.6064 9 6 4.3525 2.7575 -3.6822 10 6 4.4995 3.2622 -5.1191 11 6 4.6722 4.7823 -5.1106 12 6 3.4461 5.4312 -4.4651 13 6 3.2991 4.9266 -3.0282 14 1 4.1908 5.1878 -2.4584 15 6 2.0735 5.5760 -2.3826 16 7 2.2905 7.0201 -2.2658 17 6 1.3219 7.8157 -1.7142 18 1 0.3982 7.3784 -1.3650 19 6 1.5273 9.1841 -1.6041 20 7 2.6528 9.7169 -2.0302 21 14 0.2064 10.2692 -0.8511 22 1 -0.9543 9.4325 -0.4534 23 1 0.7535 10.9567 0.3460 24 1 -0.2301 11.2808 -1.8467 25 16 2.2929 -1.4342 0.0006 26 6 2.5192 -1.8255 1.7575 27 8 1.3969 -2.3564 -0.6041 28 8 3.5394 -1.1196 -0.6046 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 3.1858 1.1176 0.4344 33 1 1.6502 2.0042 0.5895 34 1 3.3568 3.4373 -0.9263 35 1 5.2442 3.0190 -3.1126 36 1 4.2296 1.6744 -3.6879 37 1 3.6078 3.0009 -5.6889 38 1 5.3727 2.7995 -5.5791 39 1 4.7765 5.1420 -6.1342 40 1 5.5639 5.0435 -4.5408 41 1 3.5693 6.5143 -4.4586 42 1 2.5544 5.1700 -5.0350 43 1 1.1954 5.3893 -3.0007 44 1 1.9169 5.1508 -1.3912 45 1 3.1199 7.4129 -2.5798 46 1 2.7966 10.6731 -1.9529 47 1 1.5449 -1.9178 2.2375 48 1 3.0624 -2.7655 1.8534 49 1 3.0865 -1.0279 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483433066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:39 Heat of formation + Delta-G solvation = -102.196985 kcal Electronic energy + Delta-G solvation = -29821.116394 eV Core-core repulsion = 25717.448877 eV Total energy + Delta-G solvation = -4103.667517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.10340 -38.33756 -37.38937 -36.22928 -35.91798 -34.61016 -34.03607 -31.88498 -30.10445 -29.88284 -29.55787 -28.26143 -25.55838 -25.01522 -23.03010 -22.20654 -20.61636 -20.41967 -19.77639 -19.09900 -17.98467 -17.56526 -17.09373 -16.71120 -16.33031 -15.89897 -15.17086 -14.79132 -14.76001 -14.47187 -14.24621 -13.97105 -13.80900 -13.68134 -13.60541 -13.36285 -13.21420 -13.12046 -12.98435 -12.68031 -12.48687 -12.34172 -12.31389 -11.94176 -11.81298 -11.76090 -11.48292 -11.33148 -11.04419 -10.89915 -10.87729 -10.68745 -10.43225 -10.21438 -10.14250 -10.02699 -9.92611 -9.64407 -9.14359 -8.91125 -8.78728 -6.92671 -5.78602 -3.06706 -0.11604 2.24610 2.70597 3.24432 3.41069 3.46983 3.49072 3.64093 3.78294 4.18359 4.42116 4.51477 4.55823 4.72601 4.85745 4.89355 5.00457 5.04741 5.12920 5.19760 5.27846 5.31100 5.41628 5.54794 5.57634 5.64223 5.69530 5.72213 5.73643 5.80795 5.95582 6.05748 6.14623 6.21390 6.25908 6.32003 6.34731 6.43799 6.59548 6.62934 6.70775 6.80226 6.93329 7.62013 7.68671 8.32794 8.40629 9.51919 10.10300 10.45031 11.44335 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.002792 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.758806 B =10024.905050 C =11827.417962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.985 5.985 3 C 0.104 3.896 4 C 0.497 3.503 5 O -0.530 6.530 6 N -0.720 5.720 7 C 0.155 3.845 8 H 0.087 0.913 9 C -0.127 4.127 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.107 4.107 13 C -0.100 4.100 14 H 0.075 0.925 15 C 0.160 3.840 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 S 2.611 3.389 26 C -0.677 4.677 27 O -0.949 6.949 28 O -0.946 6.946 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.402 0.598 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -21.668 6.753 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.821 5.821 3 C -0.025 4.025 4 C 0.281 3.719 5 O -0.406 6.406 6 N -0.371 5.371 7 C 0.051 3.949 8 H 0.105 0.895 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.145 4.145 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.032 3.968 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 S 2.702 3.298 26 C -0.826 4.826 27 O -0.939 6.939 28 O -0.937 6.937 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.236 0.764 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.146 0.854 48 H 0.146 0.854 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.297 -22.572 5.433 23.330 hybrid contribution -0.334 1.308 1.453 1.983 sum 1.963 -21.264 6.886 22.437 Atomic orbital electron populations 1.21515 0.77531 1.02581 1.03339 1.57094 1.15572 1.20012 1.89442 1.21162 0.98698 0.87252 0.95419 1.21005 0.78037 0.81105 0.91748 1.90693 1.47857 1.56150 1.45888 1.46068 1.57725 1.23453 1.09863 1.20987 0.98834 0.93282 0.81838 0.89536 1.21895 0.97973 1.00479 0.96206 1.21485 1.01567 0.96040 0.96200 1.21596 0.98809 0.94830 1.00623 1.21490 0.97503 1.01292 0.94189 1.21594 1.00283 0.92289 0.97741 0.90700 1.20654 0.93865 0.85864 0.96424 1.42385 1.20231 1.00810 1.74136 1.19257 0.96750 0.89033 1.31806 0.91287 1.24725 0.97442 0.96776 1.02084 1.69664 1.24611 1.11187 1.52730 0.86136 0.80943 0.80736 0.78482 1.20620 1.21924 1.21896 1.05053 0.74093 0.73278 0.77332 1.30626 1.11729 1.12109 1.28120 1.93610 1.64612 1.62467 1.73241 1.93629 1.44174 1.82719 1.73144 0.91521 0.91078 0.90823 0.87244 0.86912 0.76401 0.91906 0.91628 0.91979 0.92207 0.92164 0.92039 0.90296 0.92105 0.96485 0.96384 0.78217 0.93591 0.85389 0.85442 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 10.23 59.85 0.61 1.36 16 2 N -0.98 -8.75 2.61 -123.05 -0.32 -9.07 16 3 C 0.10 0.89 5.76 -5.20 -0.03 0.86 16 4 C 0.50 6.54 7.86 -10.98 -0.09 6.45 16 5 O -0.53 -9.12 16.08 5.56 0.09 -9.03 16 6 N -0.72 -8.92 4.31 -53.81 -0.23 -9.15 16 7 C 0.16 2.18 1.90 -67.93 -0.13 2.06 16 8 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 9 C -0.13 -1.66 5.49 -26.73 -0.15 -1.81 16 10 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 11 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 12 C -0.11 -1.64 5.08 -26.73 -0.14 -1.77 16 13 C -0.10 -1.54 1.80 -90.62 -0.16 -1.70 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 15 C 0.16 3.07 5.57 -4.04 -0.02 3.05 16 16 N -0.73 -17.77 5.33 -59.91 -0.32 -18.09 16 17 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 S 2.61 24.20 5.96 -107.50 -0.64 23.56 16 26 C -0.68 -2.85 10.99 101.05 1.11 -1.73 16 27 O -0.95 -12.18 17.09 -57.54 -0.98 -13.16 16 28 O -0.95 -12.17 16.99 -57.54 -0.98 -13.15 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 31 H 0.07 0.43 7.94 -51.93 -0.41 0.02 16 32 H 0.11 0.65 7.61 -51.93 -0.40 0.25 16 33 H 0.11 0.64 7.96 -51.93 -0.41 0.23 16 34 H 0.40 4.11 8.39 -40.82 -0.34 3.77 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.40 7.18 -51.93 -0.37 1.03 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.34 7.30 -51.93 -0.38 -0.04 16 45 H 0.38 9.79 6.85 -40.82 -0.28 9.51 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 48 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -38.11 404.89 -9.57 -47.68 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.43 Total: 7.83 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.45 Total: -3.64 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.15 Total: -63.23 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.87 Total: -35.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 24.20 SS G_CDS: -0.64 Total: 23.56 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.11 -9.57 -47.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483433066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.512 kcal (2) G-P(sol) polarization free energy of solvation -38.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds