Wall clock time and date at job start Wed Apr 1 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00312 * 2 1 4 4 C 1.50697 * 109.46978 * 274.99855 * 3 2 1 5 5 O 1.21274 * 120.00450 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99489 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99474 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47738 * 34.99759 * 7 6 4 9 9 C 1.52996 * 109.47249 * 274.99290 * 7 6 4 10 10 C 1.52997 * 109.47165 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47592 * 60.00300 * 10 9 7 12 12 C 1.53006 * 109.46626 * 300.00035 * 11 10 9 13 13 C 1.52997 * 109.47164 * 59.99702 * 12 11 10 14 14 H 1.09000 * 109.47140 * 60.00051 * 13 12 11 15 15 C 1.52996 * 109.46975 * 179.97438 * 13 12 11 16 16 N 1.46502 * 109.47446 * 294.99841 * 15 13 12 17 17 C 1.36939 * 120.00215 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99784 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00015 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99875 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99960 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47332 * 120.00121 * 21 19 17 24 24 H 1.48502 * 109.47068 * 240.00264 * 21 19 17 25 25 S 1.65602 * 119.99684 * 179.97438 * 2 1 3 26 26 C 1.81410 * 104.45029 * 270.00219 * 25 2 1 27 27 O 1.42097 * 104.27957 * 26.07077 * 25 2 1 28 28 O 1.42097 * 104.27907 * 153.93150 * 25 2 1 29 29 H 1.09006 * 109.46398 * 89.99772 * 1 2 3 30 30 H 1.09000 * 109.47467 * 209.99750 * 1 2 3 31 31 H 1.08997 * 109.46540 * 330.00379 * 1 2 3 32 32 H 1.09006 * 109.46977 * 154.99494 * 3 2 1 33 33 H 1.08997 * 109.46950 * 35.00144 * 3 2 1 34 34 H 0.96992 * 120.00293 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.47054 * 300.00354 * 9 7 6 36 36 H 1.09001 * 109.46997 * 60.00087 * 9 7 6 37 37 H 1.09000 * 109.47140 * 299.99954 * 10 9 7 38 38 H 1.09002 * 109.47045 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.47839 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47160 * 59.99666 * 11 10 9 41 41 H 1.09001 * 109.46998 * 179.97438 * 12 11 10 42 42 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 43 43 H 1.08998 * 109.47140 * 55.00356 * 15 13 12 44 44 H 1.09000 * 109.47097 * 175.00271 * 15 13 12 45 45 H 0.96997 * 119.99923 * 0.02562 * 16 15 13 46 46 H 0.97002 * 120.00037 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.46724 * 59.99951 * 26 25 2 48 48 H 1.08990 * 109.47281 * 180.02562 * 26 25 2 49 49 H 1.08998 * 109.46531 * 299.99993 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 8 1.8783 1.1230 -2.3337 6 7 2.9860 2.9236 -1.6607 7 6 3.1265 3.4063 -3.0367 8 1 2.2348 3.1449 -3.6064 9 6 4.3525 2.7575 -3.6822 10 6 4.4995 3.2622 -5.1191 11 6 4.6722 4.7823 -5.1106 12 6 3.4461 5.4312 -4.4651 13 6 3.2991 4.9266 -3.0282 14 1 4.1908 5.1878 -2.4584 15 6 2.0735 5.5760 -2.3826 16 7 2.2905 7.0201 -2.2658 17 6 1.3219 7.8157 -1.7142 18 1 0.3982 7.3784 -1.3650 19 6 1.5273 9.1841 -1.6041 20 7 2.6528 9.7169 -2.0302 21 14 0.2064 10.2692 -0.8511 22 1 -0.9543 9.4325 -0.4534 23 1 0.7535 10.9567 0.3460 24 1 -0.2301 11.2808 -1.8467 25 16 2.2929 -1.4342 0.0006 26 6 2.5192 -1.8255 1.7575 27 8 1.3969 -2.3564 -0.6041 28 8 3.5394 -1.1196 -0.6046 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 3.1858 1.1176 0.4344 33 1 1.6502 2.0042 0.5895 34 1 3.3568 3.4373 -0.9263 35 1 5.2442 3.0190 -3.1126 36 1 4.2296 1.6744 -3.6879 37 1 3.6078 3.0009 -5.6889 38 1 5.3727 2.7995 -5.5791 39 1 4.7765 5.1420 -6.1342 40 1 5.5639 5.0435 -4.5408 41 1 3.5693 6.5143 -4.4586 42 1 2.5544 5.1700 -5.0350 43 1 1.1954 5.3893 -3.0007 44 1 1.9169 5.1508 -1.3912 45 1 3.1199 7.4129 -2.5798 46 1 2.7966 10.6731 -1.9529 47 1 1.5449 -1.9178 2.2375 48 1 3.0624 -2.7655 1.8534 49 1 3.0865 -1.0279 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483433066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:38 Heat of formation + Delta-G solvation = -132.257946 kcal Electronic energy + Delta-G solvation = -29822.419935 eV Core-core repulsion = 25717.448877 eV Total energy + Delta-G solvation = -4104.971058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20144 -39.47826 -38.19882 -37.03062 -36.69616 -36.36898 -35.15371 -33.66624 -31.21076 -31.08013 -30.28299 -29.13156 -26.95914 -26.01813 -24.71131 -23.38581 -21.97691 -21.51261 -20.88432 -19.87800 -19.24650 -18.66433 -18.26576 -17.59752 -17.13314 -16.89282 -16.70716 -16.07366 -15.80559 -15.58092 -15.33328 -15.25982 -15.06179 -14.76797 -14.61704 -14.23220 -14.18981 -13.99199 -13.85062 -13.76817 -13.61765 -13.32296 -13.25260 -13.14764 -12.94838 -12.76115 -12.65834 -12.58413 -12.50599 -12.18561 -12.05428 -11.92666 -11.91413 -11.83944 -11.55027 -11.35449 -11.16663 -11.07091 -10.89592 -9.97264 -9.90809 -8.95935 -7.92947 -5.20850 -0.73972 1.48689 1.49740 1.59277 1.59736 1.72138 2.29291 2.57423 3.04047 3.15575 3.40852 3.57020 3.63879 3.77250 3.89981 3.97609 4.09851 4.10593 4.18979 4.26466 4.30818 4.39939 4.47687 4.50820 4.51842 4.53905 4.58217 4.68366 4.86102 4.89161 4.90953 5.00485 5.05404 5.07858 5.13819 5.17602 5.24890 5.30277 5.31915 5.42362 5.45340 5.50163 5.53772 5.65309 6.29498 6.64754 7.34745 7.36581 8.12220 8.36676 9.30558 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.002792 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.758806 B =10024.905050 C =11827.417962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.988 5.988 3 C 0.103 3.897 4 C 0.486 3.514 5 O -0.580 6.580 6 N -0.715 5.715 7 C 0.163 3.837 8 H 0.061 0.939 9 C -0.119 4.119 10 C -0.111 4.111 11 C -0.112 4.112 12 C -0.105 4.105 13 C -0.084 4.084 14 H 0.082 0.918 15 C 0.162 3.838 16 N -0.740 5.740 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.297 1.297 25 S 2.599 3.401 26 C -0.640 4.640 27 O -1.000 7.000 28 O -0.994 6.994 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.414 0.586 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.001 0.999 44 H 0.031 0.969 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.153 0.847 48 H 0.144 0.856 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -22.367 9.547 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.824 5.824 3 C -0.026 4.026 4 C 0.272 3.728 5 O -0.459 6.459 6 N -0.367 5.367 7 C 0.057 3.943 8 H 0.079 0.921 9 C -0.158 4.158 10 C -0.149 4.149 11 C -0.150 4.150 12 C -0.144 4.144 13 C -0.103 4.103 14 H 0.100 0.900 15 C 0.035 3.965 16 N -0.383 5.383 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.800 3.200 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.224 1.224 25 S 2.697 3.303 26 C -0.794 4.794 27 O -0.991 6.991 28 O -0.985 6.985 29 H 0.048 0.952 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.251 0.749 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.019 0.981 44 H 0.049 0.951 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.172 0.828 48 H 0.163 0.837 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.649 -23.286 8.198 24.828 hybrid contribution -0.472 1.454 0.615 1.648 sum 2.177 -21.832 8.813 23.644 Atomic orbital electron populations 1.21612 0.77261 1.04857 1.01690 1.57010 1.15805 1.19897 1.89653 1.21451 1.01000 0.87818 0.92347 1.22039 0.76750 0.80481 0.93523 1.90676 1.49839 1.57479 1.47908 1.46044 1.57597 1.23622 1.09471 1.20746 0.98399 0.92166 0.82964 0.92059 1.21821 0.97770 0.99268 0.96947 1.21471 1.02188 0.95620 0.95655 1.21527 0.97491 0.94864 1.01092 1.21437 0.98662 0.99832 0.94433 1.21417 0.98598 0.92815 0.97476 0.89995 1.20752 0.95057 0.83642 0.97033 1.42540 1.19379 1.02593 1.73766 1.19616 0.97229 0.89646 1.30869 0.90997 1.25499 0.99560 0.98154 1.03326 1.69809 1.26462 1.11116 1.54412 0.85122 0.78855 0.78757 0.77306 1.19194 1.21814 1.22422 1.05088 0.72683 0.72732 0.79786 1.30303 1.14082 1.13881 1.21182 1.93543 1.65507 1.63713 1.76305 1.93563 1.45584 1.83180 1.76136 0.95242 0.88939 0.88402 0.84231 0.83358 0.74908 0.90516 0.93196 0.92657 0.90233 0.91065 0.91203 0.92895 0.93016 0.98071 0.95080 0.79151 0.94039 0.82834 0.83721 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.23 127.77 1.31 2.66 16 2 N -0.99 -16.21 2.61 -543.23 -1.42 -17.63 16 3 C 0.10 1.52 5.76 85.63 0.49 2.01 16 4 C 0.49 12.63 7.86 87.66 0.69 13.32 16 5 O -0.58 -20.80 16.08 -3.01 -0.05 -20.84 16 6 N -0.72 -17.19 4.31 -442.54 -1.91 -19.10 16 7 C 0.16 4.59 1.90 44.99 0.09 4.68 16 8 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 9 C -0.12 -3.06 5.49 30.59 0.17 -2.89 16 10 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 11 C -0.11 -2.76 5.92 30.60 0.18 -2.58 16 12 C -0.11 -3.28 5.08 30.60 0.16 -3.13 16 13 C -0.08 -2.57 1.80 -10.80 -0.02 -2.59 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 15 C 0.16 6.24 5.57 86.38 0.48 6.72 16 16 N -0.74 -36.20 5.33 -343.45 -1.83 -38.03 16 17 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 18 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 20 N -0.97 -57.85 13.06 21.65 0.28 -57.56 16 21 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 S 2.60 45.78 5.96 -56.49 -0.34 45.44 16 26 C -0.64 -2.58 10.99 113.37 1.25 -1.33 16 27 O -1.00 -26.35 17.09 -127.65 -2.18 -28.53 16 28 O -0.99 -25.53 16.99 -127.65 -2.17 -27.69 16 29 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.09 0.93 7.79 -2.39 -0.02 0.91 16 31 H 0.10 0.94 7.94 -2.39 -0.02 0.92 16 32 H 0.14 1.21 7.61 -2.38 -0.02 1.19 16 33 H 0.15 1.14 7.96 -2.39 -0.02 1.12 16 34 H 0.41 7.73 8.39 -92.71 -0.78 6.95 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.93 7.18 -2.39 -0.02 1.91 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.03 1.14 7.30 -2.39 -0.02 1.12 16 45 H 0.38 19.48 6.85 -92.71 -0.63 18.84 16 46 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 47 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.14 0.28 8.14 -2.40 -0.02 0.27 16 49 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -86.74 404.89 -1.77 -88.51 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.47 Total: 29.74 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.27 Total: -1.55 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -4.87 Total: -132.32 kcal Atomic # 8 Polarization: -72.67 SS G_CDS: -4.40 Total: -77.07 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.34 Total: 45.44 kcal Total: -86.74 -1.77 -88.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483433066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.749 kcal (2) G-P(sol) polarization free energy of solvation -86.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds