Wall clock time and date at job start Wed Apr 1 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81406 * 109.46766 * 2 1 4 4 O 1.42094 * 110.54486 * 68.37711 * 3 2 1 5 5 O 1.42101 * 110.54205 * 291.62302 * 3 2 1 6 6 N 1.65602 * 104.44613 * 180.02562 * 3 2 1 7 7 C 1.46501 * 119.99922 * 270.00128 * 6 3 2 8 8 C 1.46504 * 120.00160 * 89.99804 * 6 3 2 9 9 C 1.50701 * 109.47176 * 94.99899 * 8 6 3 10 10 O 1.21283 * 119.99650 * 359.97438 * 9 8 6 11 11 N 1.34773 * 120.00135 * 180.02562 * 9 8 6 12 12 C 1.46495 * 119.99922 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99953 * 180.02562 * 11 9 8 14 14 C 1.53045 * 109.46217 * 119.99530 * 13 11 9 15 15 C 1.53188 * 109.31391 * 181.38498 * 14 13 11 16 16 N 1.46936 * 108.89281 * 305.29783 * 15 14 13 17 17 C 1.36935 * 120.62903 * 233.68017 * 16 15 14 18 18 H 1.08007 * 119.99920 * 27.39746 * 17 16 15 19 19 C 1.38804 * 120.00238 * 207.39383 * 17 16 15 20 20 N 1.31624 * 120.00025 * 17.25587 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 197.25673 * 19 17 16 22 22 H 1.48497 * 109.47244 * 60.00150 * 21 19 17 23 23 H 1.48504 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47113 * 300.00082 * 21 19 17 25 25 C 1.47199 * 118.55327 * 53.53951 * 16 15 14 26 26 C 1.53035 * 109.45950 * 240.07015 * 13 11 9 27 27 H 1.08998 * 109.47067 * 300.00392 * 1 2 3 28 28 H 1.09004 * 109.47382 * 59.99682 * 1 2 3 29 29 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46988 * 240.00148 * 2 1 3 31 31 H 1.08994 * 109.46956 * 119.99638 * 2 1 3 32 32 H 1.09003 * 109.46866 * 269.99793 * 7 6 3 33 33 H 1.08998 * 109.47489 * 30.00046 * 7 6 3 34 34 H 1.09004 * 109.46800 * 150.00214 * 7 6 3 35 35 H 1.09004 * 109.46820 * 335.00286 * 8 6 3 36 36 H 1.08999 * 109.47292 * 215.00035 * 8 6 3 37 37 H 1.09005 * 109.47097 * 269.99794 * 12 11 9 38 38 H 1.08998 * 109.47617 * 30.00069 * 12 11 9 39 39 H 1.09006 * 109.47226 * 150.00467 * 12 11 9 40 40 H 1.09002 * 109.44878 * 0.03212 * 13 11 9 41 41 H 1.09001 * 109.49105 * 61.43765 * 14 13 11 42 42 H 1.08999 * 109.52410 * 301.35407 * 14 13 11 43 43 H 1.08994 * 109.58954 * 65.15196 * 15 14 13 44 44 H 1.08992 * 109.58924 * 185.43968 * 15 14 13 45 45 H 0.96996 * 120.00327 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.53153 * 186.67308 * 25 16 15 47 47 H 1.09002 * 109.68302 * 66.36980 * 25 16 15 48 48 H 1.09007 * 109.49366 * 298.56131 * 26 13 11 49 49 H 1.08993 * 109.50367 * 58.62610 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8384 2.3439 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5011 1.2677 8 6 4.5134 1.5014 -1.2698 9 6 4.9942 2.8801 -1.6430 10 8 4.7512 3.8233 -0.9202 11 7 5.6933 3.0651 -2.7803 12 6 5.9853 1.9261 -3.6540 13 6 6.1611 4.4052 -3.1427 14 6 7.6880 4.4014 -3.2473 15 6 8.1757 5.8119 -3.5924 16 7 7.4913 6.2673 -4.8103 17 6 8.2083 6.7186 -5.8861 18 1 9.2128 6.3594 -6.0547 19 6 7.6441 7.6376 -6.7600 20 7 6.5850 8.3287 -6.3948 21 14 8.3877 7.8938 -8.4544 22 1 8.3542 6.6148 -9.2082 23 1 7.6061 8.9217 -9.1877 24 1 9.7942 8.3489 -8.3140 25 6 6.0205 6.2245 -4.8486 26 6 5.5568 4.8093 -4.4894 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.7855 2.5089 1.5824 33 1 3.8830 1.0407 2.0276 34 1 5.4182 0.9059 1.1368 35 1 3.8525 1.1236 -2.0499 36 1 5.3691 0.8345 -1.1640 37 1 6.9335 1.4761 -3.3597 38 1 5.1893 1.1867 -3.5656 39 1 6.0506 2.2679 -4.6870 40 1 5.8514 5.1171 -2.3775 41 1 7.9972 3.7080 -4.0294 42 1 8.1175 4.0907 -2.2949 43 1 7.9468 6.4892 -2.7697 44 1 9.2521 5.7948 -3.7629 45 1 6.1909 8.9712 -7.0053 46 1 5.6745 6.4792 -5.8503 47 1 5.6136 6.9358 -4.1297 48 1 5.8862 4.1120 -5.2598 49 1 4.4692 4.7886 -4.4210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490423133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:23 Heat of formation + Delta-G solvation = -69.725156 kcal Electronic energy + Delta-G solvation = -30138.570264 eV Core-core repulsion = 26036.310831 eV Total energy + Delta-G solvation = -4102.259433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.00548 -37.61425 -37.33004 -36.16799 -35.88324 -35.03311 -33.58485 -32.50116 -30.38732 -29.73026 -28.65001 -26.84737 -25.83807 -24.77294 -24.19158 -22.15579 -22.00019 -19.74127 -18.99540 -18.75849 -18.00878 -17.33058 -16.85253 -16.65169 -16.37878 -15.81575 -15.38919 -15.10105 -14.72664 -14.34312 -14.21892 -13.77285 -13.60539 -13.56157 -13.40765 -13.13149 -12.97507 -12.95108 -12.88938 -12.61875 -12.38058 -12.37537 -12.25867 -12.18127 -12.02572 -11.86459 -11.75476 -11.44259 -11.08530 -10.94992 -10.79155 -10.70064 -10.31513 -10.23491 -10.09906 -10.03892 -9.68717 -9.59050 -9.04256 -8.51193 -8.25992 -6.66699 -5.76198 -3.18401 -0.10243 2.28662 2.74668 3.17342 3.39782 3.45591 3.46459 3.63894 3.77935 4.09106 4.30288 4.34982 4.51296 4.54315 4.71025 4.82402 4.96108 5.09851 5.13172 5.18602 5.22831 5.34305 5.39993 5.42312 5.45569 5.52577 5.55031 5.68970 5.69870 5.71779 5.91382 6.06812 6.12215 6.25747 6.38696 6.52129 6.61010 6.68059 6.81230 6.94182 7.00195 7.38149 7.58589 7.70697 7.81030 8.35008 8.46763 9.22717 9.86433 10.43974 11.32639 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002404 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.344488 B =11645.242327 C =11967.364898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.636 4.636 3 S 2.606 3.394 4 O -0.946 6.946 5 O -0.941 6.941 6 N -0.987 5.987 7 C 0.096 3.904 8 C 0.107 3.893 9 C 0.494 3.506 10 O -0.528 6.528 11 N -0.608 5.608 12 C 0.073 3.927 13 C 0.145 3.855 14 C -0.136 4.136 15 C 0.147 3.853 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.173 3.827 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.019 0.981 44 H 0.056 0.944 45 H 0.255 0.745 46 H 0.091 0.909 47 H 0.021 0.979 48 H 0.057 0.943 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 -23.914 12.679 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.764 4.764 3 S 2.697 3.303 4 O -0.936 6.936 5 O -0.931 6.931 6 N -0.823 5.823 7 C -0.049 4.049 8 C -0.022 4.022 9 C 0.279 3.721 10 O -0.404 6.404 11 N -0.342 5.342 12 C -0.070 4.070 13 C 0.043 3.957 14 C -0.176 4.176 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.047 3.953 26 C -0.186 4.186 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.039 0.961 48 H 0.076 0.924 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.985 -22.468 12.990 27.153 hybrid contribution 0.596 -0.704 -1.010 1.368 sum -7.390 -23.172 11.980 27.112 Atomic orbital electron populations 1.21510 0.90406 1.05046 1.03704 1.30604 1.07358 1.27018 1.11447 1.05429 0.72840 0.77258 0.74733 1.93598 1.82890 1.71866 1.45281 1.93639 1.82772 1.71714 1.44987 1.57162 1.24585 1.89576 1.10978 1.21502 0.97095 1.03251 0.83088 1.21213 0.99083 0.96045 0.85867 1.20996 0.78474 0.91393 0.81254 1.90700 1.56079 1.42767 1.50862 1.48160 1.54471 1.09779 1.21773 1.21789 1.00359 0.88551 0.96295 1.21197 0.94173 0.82059 0.98302 1.22347 0.94438 1.00749 1.00046 1.20859 0.96135 0.91167 0.89835 1.44144 1.01453 1.74310 1.11622 1.19122 0.99121 1.18566 1.01439 0.91691 1.25046 0.98697 0.96027 0.99913 1.70024 1.24346 1.25252 1.34989 0.86368 0.78492 0.77369 0.84509 1.21092 1.21653 1.20919 1.20808 0.83318 0.89228 1.01994 1.22555 0.99029 1.01778 0.95225 0.90906 0.90773 0.89968 0.85089 0.85129 0.91468 0.91066 0.91023 0.87407 0.87341 0.92607 0.91713 0.90117 0.88715 0.92131 0.93083 0.96273 0.92543 0.93519 0.89104 0.96111 0.92407 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.92 37.16 0.37 -0.47 16 2 C -0.64 -3.51 6.90 37.16 0.26 -3.26 16 3 S 2.61 28.45 5.32 -107.50 -0.57 27.88 16 4 O -0.95 -13.41 17.09 -57.54 -0.98 -14.39 16 5 O -0.94 -13.98 16.98 -57.54 -0.98 -14.96 16 6 N -0.99 -9.79 2.61 -123.05 -0.32 -10.11 16 7 C 0.10 0.78 10.23 59.85 0.61 1.39 16 8 C 0.11 1.02 4.31 -5.19 -0.02 1.00 16 9 C 0.49 7.49 7.74 -10.99 -0.09 7.40 16 10 O -0.53 -10.45 15.75 5.55 0.09 -10.36 16 11 N -0.61 -8.93 2.76 -173.89 -0.48 -9.41 16 12 C 0.07 0.75 9.33 59.84 0.56 1.30 16 13 C 0.14 2.64 2.48 -67.89 -0.17 2.47 16 14 C -0.14 -2.38 5.34 -26.61 -0.14 -2.52 16 15 C 0.15 3.14 6.51 -3.71 -0.02 3.11 16 16 N -0.59 -14.97 3.01 -172.10 -0.52 -15.48 16 17 C -0.25 -6.93 9.59 -15.06 -0.14 -7.08 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -26.52 11.18 55.49 0.62 -25.90 16 21 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.17 4.23 5.33 -3.56 -0.02 4.22 16 26 C -0.15 -2.89 5.31 -26.61 -0.14 -3.03 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 34 H 0.07 0.39 7.94 -51.93 -0.41 -0.02 16 35 H 0.11 0.79 6.86 -51.93 -0.36 0.43 16 36 H 0.11 0.62 7.93 -51.93 -0.41 0.20 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.45 6.44 -51.93 -0.33 0.12 16 39 H 0.08 0.90 6.46 -51.93 -0.34 0.57 16 40 H 0.09 2.01 6.90 -51.93 -0.36 1.65 16 41 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.10 6.73 -51.93 -0.35 0.75 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -38.47 398.01 -9.50 -47.97 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.29 Total: -2.40 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.96 Total: 4.50 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.70 Total: -60.91 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.87 Total: -39.71 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 16 Polarization: 28.45 SS G_CDS: -0.57 Total: 27.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.47 -9.50 -47.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490423133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.756 kcal (2) G-P(sol) polarization free energy of solvation -38.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds