Wall clock time and date at job start Wed Apr 1 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81406 * 109.46766 * 2 1 4 4 O 1.42094 * 110.54486 * 68.37711 * 3 2 1 5 5 O 1.42101 * 110.54205 * 291.62302 * 3 2 1 6 6 N 1.65602 * 104.44613 * 180.02562 * 3 2 1 7 7 C 1.46501 * 119.99922 * 270.00128 * 6 3 2 8 8 C 1.46504 * 120.00160 * 89.99804 * 6 3 2 9 9 C 1.50701 * 109.47176 * 94.99899 * 8 6 3 10 10 O 1.21283 * 119.99650 * 359.97438 * 9 8 6 11 11 N 1.34773 * 120.00135 * 180.02562 * 9 8 6 12 12 C 1.46495 * 119.99922 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99953 * 180.02562 * 11 9 8 14 14 C 1.53045 * 109.46217 * 119.99530 * 13 11 9 15 15 C 1.53188 * 109.31391 * 181.38498 * 14 13 11 16 16 N 1.46936 * 108.89281 * 305.29783 * 15 14 13 17 17 C 1.36935 * 120.62903 * 233.68017 * 16 15 14 18 18 H 1.08007 * 119.99920 * 27.39746 * 17 16 15 19 19 C 1.38804 * 120.00238 * 207.39383 * 17 16 15 20 20 N 1.31624 * 120.00025 * 17.25587 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 197.25673 * 19 17 16 22 22 H 1.48497 * 109.47244 * 60.00150 * 21 19 17 23 23 H 1.48504 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47113 * 300.00082 * 21 19 17 25 25 C 1.47199 * 118.55327 * 53.53951 * 16 15 14 26 26 C 1.53035 * 109.45950 * 240.07015 * 13 11 9 27 27 H 1.08998 * 109.47067 * 300.00392 * 1 2 3 28 28 H 1.09004 * 109.47382 * 59.99682 * 1 2 3 29 29 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46988 * 240.00148 * 2 1 3 31 31 H 1.08994 * 109.46956 * 119.99638 * 2 1 3 32 32 H 1.09003 * 109.46866 * 269.99793 * 7 6 3 33 33 H 1.08998 * 109.47489 * 30.00046 * 7 6 3 34 34 H 1.09004 * 109.46800 * 150.00214 * 7 6 3 35 35 H 1.09004 * 109.46820 * 335.00286 * 8 6 3 36 36 H 1.08999 * 109.47292 * 215.00035 * 8 6 3 37 37 H 1.09005 * 109.47097 * 269.99794 * 12 11 9 38 38 H 1.08998 * 109.47617 * 30.00069 * 12 11 9 39 39 H 1.09006 * 109.47226 * 150.00467 * 12 11 9 40 40 H 1.09002 * 109.44878 * 0.03212 * 13 11 9 41 41 H 1.09001 * 109.49105 * 61.43765 * 14 13 11 42 42 H 1.08999 * 109.52410 * 301.35407 * 14 13 11 43 43 H 1.08994 * 109.58954 * 65.15196 * 15 14 13 44 44 H 1.08992 * 109.58924 * 185.43968 * 15 14 13 45 45 H 0.96996 * 120.00327 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.53153 * 186.67308 * 25 16 15 47 47 H 1.09002 * 109.68302 * 66.36980 * 25 16 15 48 48 H 1.09007 * 109.49366 * 298.56131 * 26 13 11 49 49 H 1.08993 * 109.50367 * 58.62610 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8384 2.3439 -1.2370 6 7 3.7842 1.5654 -0.0007 7 6 4.5145 1.5011 1.2677 8 6 4.5134 1.5014 -1.2698 9 6 4.9942 2.8801 -1.6430 10 8 4.7512 3.8233 -0.9202 11 7 5.6933 3.0651 -2.7803 12 6 5.9853 1.9261 -3.6540 13 6 6.1611 4.4052 -3.1427 14 6 7.6880 4.4014 -3.2473 15 6 8.1757 5.8119 -3.5924 16 7 7.4913 6.2673 -4.8103 17 6 8.2083 6.7186 -5.8861 18 1 9.2128 6.3594 -6.0547 19 6 7.6441 7.6376 -6.7600 20 7 6.5850 8.3287 -6.3948 21 14 8.3877 7.8938 -8.4544 22 1 8.3542 6.6148 -9.2082 23 1 7.6061 8.9217 -9.1877 24 1 9.7942 8.3489 -8.3140 25 6 6.0205 6.2245 -4.8486 26 6 5.5568 4.8093 -4.4894 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.7855 2.5089 1.5824 33 1 3.8830 1.0407 2.0276 34 1 5.4182 0.9059 1.1368 35 1 3.8525 1.1236 -2.0499 36 1 5.3691 0.8345 -1.1640 37 1 6.9335 1.4761 -3.3597 38 1 5.1893 1.1867 -3.5656 39 1 6.0506 2.2679 -4.6870 40 1 5.8514 5.1171 -2.3775 41 1 7.9972 3.7080 -4.0294 42 1 8.1175 4.0907 -2.2949 43 1 7.9468 6.4892 -2.7697 44 1 9.2521 5.7948 -3.7629 45 1 6.1909 8.9712 -7.0053 46 1 5.6745 6.4792 -5.8503 47 1 5.6136 6.9358 -4.1297 48 1 5.8862 4.1120 -5.2598 49 1 4.4692 4.7886 -4.4210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490423133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:22 Heat of formation + Delta-G solvation = -99.589219 kcal Electronic energy + Delta-G solvation = -30139.865267 eV Core-core repulsion = 26036.310831 eV Total energy + Delta-G solvation = -4103.554436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.19862 -39.12682 -38.25465 -37.09791 -36.83172 -36.40536 -34.30139 -34.03692 -32.09629 -31.47278 -29.59615 -27.86572 -27.01806 -26.09364 -24.78527 -23.90028 -23.61922 -21.09903 -20.33232 -19.71555 -18.80225 -18.75800 -18.23457 -17.59986 -17.28594 -17.02826 -16.66598 -16.39380 -15.75841 -15.61918 -15.40215 -15.06641 -14.94826 -14.79442 -14.49949 -14.16066 -14.12254 -13.96986 -13.90708 -13.75071 -13.42289 -13.33978 -13.21836 -13.20440 -13.08124 -12.99019 -12.61070 -12.57123 -12.54198 -12.51478 -12.40088 -12.08827 -12.02250 -11.90858 -11.57237 -11.47035 -11.34504 -11.13217 -10.57099 -9.95418 -9.53986 -8.74389 -7.88076 -5.34479 -0.82816 1.47950 1.50502 1.55722 1.57837 1.66137 2.08813 2.51579 2.95134 3.08583 3.27566 3.53118 3.59163 3.64512 3.77869 3.90182 3.94071 4.05812 4.20537 4.30815 4.37209 4.38453 4.43834 4.45606 4.63405 4.64415 4.70529 4.70814 4.77832 4.82104 4.83700 4.91404 5.01827 5.04239 5.05562 5.06370 5.11792 5.14002 5.28247 5.40555 5.44385 5.61791 5.64433 5.66915 6.36548 6.51248 7.11188 7.24137 7.81610 8.36220 9.19436 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002404 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.344488 B =11645.242327 C =11967.364898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.590 4.590 3 S 2.583 3.417 4 O -0.999 6.999 5 O -0.997 6.997 6 N -0.989 5.989 7 C 0.090 3.910 8 C 0.109 3.891 9 C 0.478 3.522 10 O -0.591 6.591 11 N -0.608 5.608 12 C 0.063 3.937 13 C 0.152 3.848 14 C -0.115 4.115 15 C 0.141 3.859 16 N -0.608 5.608 17 C -0.261 4.261 18 H 0.075 0.925 19 C -0.056 4.056 20 N -0.941 5.941 21 Si 0.973 3.027 22 H -0.273 1.273 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.181 3.819 26 C -0.128 4.128 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.025 0.975 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.001 0.999 44 H 0.066 0.934 45 H 0.250 0.750 46 H 0.061 0.939 47 H -0.018 1.018 48 H 0.075 0.925 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -29.453 12.298 32.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.725 4.725 3 S 2.682 3.318 4 O -0.989 6.989 5 O -0.987 6.987 6 N -0.825 5.825 7 C -0.055 4.055 8 C -0.019 4.019 9 C 0.266 3.734 10 O -0.470 6.470 11 N -0.341 5.341 12 C -0.078 4.078 13 C 0.048 3.952 14 C -0.155 4.155 15 C 0.015 3.985 16 N -0.331 5.331 17 C -0.391 4.391 18 H 0.092 0.908 19 C -0.251 4.251 20 N -0.587 5.587 21 Si 0.801 3.199 22 H -0.199 1.199 23 H -0.224 1.224 24 H -0.200 1.200 25 C 0.055 3.945 26 C -0.168 4.168 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.185 0.815 31 H 0.183 0.817 32 H 0.044 0.956 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.000 1.000 48 H 0.093 0.907 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.852 -28.013 12.615 31.477 hybrid contribution 0.216 0.988 -0.814 1.298 sum -6.636 -27.025 11.801 30.226 Atomic orbital electron populations 1.21737 0.90483 1.06797 1.03373 1.30246 1.06909 1.20286 1.15017 1.05788 0.73266 0.79899 0.72818 1.93525 1.83634 1.75135 1.46636 1.93564 1.83588 1.75072 1.46492 1.57041 1.24209 1.89581 1.11647 1.21662 0.98997 1.01726 0.83109 1.21550 1.01398 0.92602 0.86376 1.22284 0.77308 0.93378 0.80400 1.90684 1.58211 1.45326 1.52828 1.48169 1.54124 1.09205 1.22579 1.22185 1.03458 0.87515 0.94689 1.20731 0.94665 0.84090 0.95725 1.22103 0.93583 0.98169 1.01637 1.21029 0.96564 0.93117 0.87792 1.44393 1.01586 1.74533 1.12636 1.19537 0.99553 1.18068 1.01956 0.90758 1.25908 0.99403 0.96062 1.03682 1.70217 1.26170 1.26230 1.36087 0.85257 0.77700 0.77293 0.79682 1.19856 1.22439 1.19966 1.20539 0.83485 0.91386 0.99139 1.22271 0.98708 0.98856 0.96926 0.91430 0.91404 0.86884 0.81464 0.81703 0.95588 0.88986 0.87365 0.84629 0.82050 0.89732 0.87745 0.91169 0.92818 0.90321 0.90873 0.98129 0.91533 0.94143 0.92095 0.99957 0.90678 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.92 71.98 0.71 -0.63 16 2 C -0.59 -3.86 6.90 71.98 0.50 -3.36 16 3 S 2.58 54.38 5.32 -56.49 -0.30 54.08 16 4 O -1.00 -29.51 17.09 -127.65 -2.18 -31.69 16 5 O -1.00 -30.23 16.98 -127.65 -2.17 -32.39 16 6 N -0.99 -17.53 2.61 -543.20 -1.42 -18.95 16 7 C 0.09 1.31 10.23 127.77 1.31 2.61 16 8 C 0.11 1.67 4.31 85.63 0.37 2.04 16 9 C 0.48 14.05 7.74 87.66 0.68 14.73 16 10 O -0.59 -24.53 15.75 -3.04 -0.05 -24.58 16 11 N -0.61 -16.79 2.76 -822.44 -2.27 -19.06 16 12 C 0.06 1.00 9.33 127.77 1.19 2.19 16 13 C 0.15 5.61 2.48 45.02 0.11 5.72 16 14 C -0.12 -3.90 5.34 30.67 0.16 -3.74 16 15 C 0.14 6.09 6.51 86.36 0.56 6.65 16 16 N -0.61 -31.59 3.01 -698.39 -2.10 -33.69 16 17 C -0.26 -14.48 9.59 84.03 0.81 -13.68 16 18 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 19 C -0.06 -3.16 4.92 84.86 0.42 -2.75 16 20 N -0.94 -57.82 11.18 21.65 0.24 -57.58 16 21 Si 0.97 45.15 29.59 68.60 2.03 47.18 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.18 9.40 5.33 86.31 0.46 9.86 16 26 C -0.13 -5.20 5.31 30.67 0.16 -5.04 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.17 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.17 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.90 7.79 -2.39 -0.02 0.89 16 34 H 0.11 0.75 7.94 -2.38 -0.02 0.73 16 35 H 0.14 1.33 6.86 -2.39 -0.02 1.31 16 36 H 0.16 0.78 7.93 -2.39 -0.02 0.76 16 37 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.10 0.85 6.44 -2.39 -0.02 0.83 16 39 H 0.07 1.31 6.46 -2.38 -0.02 1.29 16 40 H 0.05 2.43 6.90 -2.39 -0.02 2.42 16 41 H 0.08 2.43 7.72 -2.39 -0.02 2.41 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 45 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.06 3.51 6.04 -2.39 -0.01 3.49 16 47 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 48 H 0.07 2.80 6.73 -2.38 -0.02 2.78 16 49 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -94.59 398.01 0.15 -94.44 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.93 Total: 7.64 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 7.44 Total: 14.62 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -5.54 Total: -129.29 kcal Atomic # 8 Polarization: -84.27 SS G_CDS: -4.40 Total: -88.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 54.38 SS G_CDS: -0.30 Total: 54.08 kcal Total: -94.59 0.15 -94.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490423133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.151 kcal (2) G-P(sol) polarization free energy of solvation -94.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds